Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100289552 Sequence: fasta or formatted (284aa) NCBI GI: 239741434
Description:

PREDICTED: hypothetical protein XP_002342199

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         25           2
 C cysteine            1.1          3           1
 D aspartate           6.0         17           2
 E glutamate           6.3         18           1
 F phenylalanine       1.1          3           1
 G glycine             8.8         25           2
 H histidine           5.6         16           1
 I isoleucine          3.2          9           1
 K lysine              1.4          4           1
 L leucine             8.5         24           1
 M methionine          2.8          8           1
 N asparagine          2.1          6           1
 P proline             7.7         22           2
 Q glutamine           6.7         19           2
 R arginine            7.0         20           2
 S serine              8.1         23           2
 T threonine           6.7         19           2
 V valine              4.9         14           1
 W tryptophan          1.8          5           1
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342199 
LOC100290314          1.000   PREDICTED: hypothetical protein XP_002347649 
LOC100291755          0.461   PREDICTED: hypothetical protein XP_002345320 
LOC100131909          0.119   PREDICTED: hypothetical protein 
LOC100131909          0.119   PREDICTED: hypothetical protein 
LOC100131909          0.119   PREDICTED: hypothetical protein 
HRC                   0.034   histidine rich calcium binding protein precursor [Hom...
LOC728650             0.020   PREDICTED: hypothetical protein 
LOC100292515          0.018   PREDICTED: hypothetical protein 
LOC100289910          0.018   PREDICTED: hypothetical protein XP_002347211 
LOC100287264          0.018   PREDICTED: hypothetical protein XP_002343075 
LOC284297             0.016   hypothetical protein LOC284297 
RPGR                  0.014   retinitis pigmentosa GTPase regulator isoform C [Hom...
C1orf183              0.012   hypothetical protein LOC55924 isoform 2 
C1orf183              0.012   hypothetical protein LOC55924 isoform 1 
HRG                   0.012   histidine-rich glycoprotein precursor 
LOC100287311          0.009   PREDICTED: hypothetical protein XP_002343729 
LSP1                  0.009   lymphocyte-specific protein 1 isoform 1 
KIAA1614              0.009   hypothetical protein LOC57710 
ANP32A                0.009   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
SP2                   0.009   Sp2 transcription factor 
KIAA1429              0.009   hypothetical protein LOC25962 isoform 1 
KIAA1429              0.009   hypothetical protein LOC25962 isoform 2 
FAM168A               0.009   hypothetical protein LOC23201 
LOC645602             0.009   PREDICTED: hypothetical protein 
LOC645602             0.009   PREDICTED: hypothetical protein 
LOC645602             0.009   PREDICTED: hypothetical protein 
LOC100289065          0.007   PREDICTED: hypothetical protein 
LOC100289065          0.007   PREDICTED: hypothetical protein XP_002343789 
SDCCAG1               0.007   serologically defined colon cancer antigen 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press