Guide to the Human Genome
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Name: LOC100132858 Sequence: fasta or formatted (384aa) NCBI GI: 239743047
Description:

PREDICTED: similar to family with sequence similarity 157, member B

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         28           2
 C cysteine            1.8          7           1
 D aspartate           2.9         11           1
 E glutamate           3.4         13           1
 F phenylalanine       3.4         13           2
 G glycine             8.3         32           3
 H histidine           3.4         13           1
 I isoleucine          3.1         12           1
 K lysine              4.7         18           2
 L leucine             7.8         30           3
 M methionine          2.6         10           1
 N asparagine          2.1          8           1
 P proline            10.7         41           4
 Q glutamine           8.3         32          11
 R arginine           11.5         44           5
 S serine              6.8         26           2
 T threonine           4.9         19           2
 V valine              4.2         16           1
 W tryptophan          1.8          7           1
 Y tyrosine            1.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to family with sequence similari... 
FAM157B               0.979   family with sequence similarity 157, member B [Homo...
FAM157A               0.952   family with sequence similarity 157, member A [Homo...
FAM157C               0.950   PREDICTED: family with sequence similarity 157, mem...
LOC100130360          0.023   PREDICTED: hypothetical protein 
SH3BP1                0.018   SH3-domain binding protein 1 
MED12                 0.018   mediator complex subunit 12 
MAML3                 0.017   mastermind-like 3 
MN1                   0.017   meningioma  1 
POLG                  0.015   DNA-directed DNA polymerase gamma 
POLG                  0.015   DNA-directed DNA polymerase gamma 
MESP2                 0.015   mesoderm posterior 2 homolog 
FOXP2                 0.015   forkhead box P2 isoform I 
FOXP2                 0.015   forkhead box P2 isoform III 
FOXP2                 0.015   forkhead box P2 isoform II 
LOC100289661          0.015   PREDICTED: hypothetical protein XP_002343723 
MAMLD1                0.015   mastermind-like domain containing 1 
THAP11                0.014   THAP domain containing 11 
VEZF1                 0.014   zinc finger protein 161 
LOC100291136          0.013   PREDICTED: hypothetical protein XP_002347630 
LOC100287129          0.013   PREDICTED: hypothetical protein XP_002343480 
MLL2                  0.013   myeloid/lymphoid or mixed-lineage leukemia 2 
AAK1                  0.013   AP2 associated kinase 1 
MAML2                 0.013   mastermind-like 2 
TTBK1                 0.013   tau tubulin kinase 1 
COL2A1                0.012   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.012   collagen, type II, alpha 1 isoform 2 precursor [Hom...
HDAC5                 0.012   histone deacetylase 5 isoform 3 
HDAC5                 0.012   histone deacetylase 5 isoform 1 
LOC730130             0.012   hypothetical protein LOC730130 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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