Guide to the Human Genome
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Name: UBE2D1 Sequence: fasta or formatted (147aa) NCBI GI: 4507773
Description:

ubiquitin-conjugating enzyme E2D 1

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         10           1
 C cysteine            2.7          4           1
 D aspartate           8.2         12           2
 E glutamate           2.0          3           1
 F phenylalanine       4.1          6           2
 G glycine             4.1          6           2
 H histidine           3.4          5           1
 I isoleucine          6.8         10           1
 K lysine              6.8         10           1
 L leucine             8.8         13           2
 M methionine          2.0          3           1
 N asparagine          3.4          5           1
 P proline            10.2         15           2
 Q glutamine           4.8          7           1
 R arginine            3.4          5           1
 S serine              7.5         11           1
 T threonine           4.8          7           2
 V valine              4.1          6           1
 W tryptophan          2.0          3           1
 Y tyrosine            4.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin-conjugating enzyme E2D 1 
UBE2D4                0.924   ubiquitin-conjugating enzyme E2D 4 (putative) 
UBE2D2                0.910   ubiquitin-conjugating enzyme E2D 2 isoform 1 
UBE2D3                0.903   ubiquitin-conjugating enzyme E2D 3 isoform 2 
UBE2D3                0.903   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.903   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.903   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.903   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.903   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.903   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.903   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.875   ubiquitin-conjugating enzyme E2D 3 isoform 3 
UBE2D2                0.734   ubiquitin-conjugating enzyme E2D 2 isoform 2 
UBE2E2                0.609   ubiquitin-conjugating enzyme E2E 2 
UBE2E1                0.609   ubiquitin-conjugating enzyme E2E 1 isoform 1 
UBE2E3                0.609   ubiquitin-conjugating enzyme E2E 3 
UBE2E3                0.609   ubiquitin-conjugating enzyme E2E 3 
UBE2E1                0.519   ubiquitin-conjugating enzyme E2E 1 isoform 2 
UBE2N                 0.381   ubiquitin-conjugating enzyme E2N 
UBE2A                 0.374   ubiquitin-conjugating enzyme E2A isoform 1 
UBE2B                 0.363   ubiquitin-conjugating enzyme E2B 
UBE2T                 0.353   ubiquitin-conjugating enzyme E2T 
UBE2G2                0.336   ubiquitin-conjugating enzyme E2G 2 isoform 1 
UBE2G1                0.329   ubiquitin-conjugating enzyme E2G 1 
UBE2L3                0.325   ubiquitin-conjugating enzyme E2L 3 isoform 1 
UBE2K                 0.325   ubiquitin-conjugating enzyme E2K isoform 1 
UBE2NL                0.298   ubiquitin-conjugating enzyme E2N-like 
UBE2L6                0.287   ubiquitin-conjugating enzyme E2L 6 isoform 1 
UBE2C                 0.287   ubiquitin-conjugating enzyme E2C isoform 1 
UBE2G2                0.280   ubiquitin-conjugating enzyme E2G 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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