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Search of human proteins with 94680985
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|94680985 cyclin J-like [Homo sapiens]
(435 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|94680985 cyclin J-like [Homo sapiens] 900 0.0
gi|197276674 cyclin J isoform 1 [Homo sapiens] 285 4e-77
gi|40254889 cyclin J isoform 2 [Homo sapiens] 267 2e-71
gi|197276676 cyclin J isoform 3 [Homo sapiens] 265 6e-71
gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo ... 55 1e-07
gi|6005810 mitogen-activated protein kinase kinase kinase kinase... 52 8e-07
gi|4502613 cyclin A [Homo sapiens] 52 1e-06
gi|170932471 hypothetical protein LOC79703 [Homo sapiens] 52 1e-06
gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens] 51 2e-06
gi|34147532 myosin, light chain 10, regulatory [Homo sapiens] 50 3e-06
gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo sapi... 50 4e-06
gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo sapi... 50 4e-06
gi|237858664 hypothetical protein LOC123207 isoform b [Homo sapi... 50 4e-06
gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens] 49 9e-06
gi|16950655 cyclin D1 [Homo sapiens] 47 4e-05
gi|161377472 cyclin A1 isoform c [Homo sapiens] 46 8e-05
gi|161377470 cyclin A1 isoform c [Homo sapiens] 46 8e-05
gi|161377468 cyclin A1 isoform b [Homo sapiens] 46 8e-05
gi|4502611 cyclin A1 isoform a [Homo sapiens] 46 8e-05
gi|148839316 NIMA-related kinase 4 [Homo sapiens] 45 1e-04
gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo sapiens] 45 1e-04
gi|118442834 RPGRIP1-like isoform a [Homo sapiens] 45 1e-04
gi|66348062 fumarylacetoacetate hydrolase domain containing 1 is... 45 1e-04
gi|14327896 cyclin B1 [Homo sapiens] 45 2e-04
gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens] 44 2e-04
gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens] 44 2e-04
gi|4502617 cyclin D2 [Homo sapiens] 44 3e-04
gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1 [... 43 5e-04
gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo s... 43 5e-04
gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo ... 42 0.001
>gi|94680985 cyclin J-like [Homo sapiens]
Length = 435
Score = 900 bits (2325), Expect = 0.0
Identities = 435/435 (100%), Positives = 435/435 (100%)
Query: 1 MMDEPWWEGRVASDVHCTLREKELKLPTFRAHSPLLKSRRFFVDILTLLSSHCQLCPAAR 60
MMDEPWWEGRVASDVHCTLREKELKLPTFRAHSPLLKSRRFFVDILTLLSSHCQLCPAAR
Sbjct: 1 MMDEPWWEGRVASDVHCTLREKELKLPTFRAHSPLLKSRRFFVDILTLLSSHCQLCPAAR 60
Query: 61 HLAVYLLDHFMDRYNVTTSKQLYTVAVSCLLLANGVSLLSPRLKCSGMISAHCNLHLPGS 120
HLAVYLLDHFMDRYNVTTSKQLYTVAVSCLLLANGVSLLSPRLKCSGMISAHCNLHLPGS
Sbjct: 61 HLAVYLLDHFMDRYNVTTSKQLYTVAVSCLLLANGVSLLSPRLKCSGMISAHCNLHLPGS 120
Query: 121 SNSPASAPHPPPTPPQVAETTGKFEDREDHVPKLEQINSTRILSSQNFTLTKKELLSTEL 180
SNSPASAPHPPPTPPQVAETTGKFEDREDHVPKLEQINSTRILSSQNFTLTKKELLSTEL
Sbjct: 121 SNSPASAPHPPPTPPQVAETTGKFEDREDHVPKLEQINSTRILSSQNFTLTKKELLSTEL 180
Query: 181 LLLEAFSWNLCLPTPAHFLDYYLLASVSQKDHHCHTWPTTCPRKTKECLKEYAHYFLEVT 240
LLLEAFSWNLCLPTPAHFLDYYLLASVSQKDHHCHTWPTTCPRKTKECLKEYAHYFLEVT
Sbjct: 181 LLLEAFSWNLCLPTPAHFLDYYLLASVSQKDHHCHTWPTTCPRKTKECLKEYAHYFLEVT 240
Query: 241 LQDHIFYKFQPSVVAAACVGASRICLQLSPYWTRDLQRISSYSLEHLSTCIEILLVVYDN 300
LQDHIFYKFQPSVVAAACVGASRICLQLSPYWTRDLQRISSYSLEHLSTCIEILLVVYDN
Sbjct: 241 LQDHIFYKFQPSVVAAACVGASRICLQLSPYWTRDLQRISSYSLEHLSTCIEILLVVYDN 300
Query: 301 VLKDAVAVKSQALAMVPGTPPTPTQVLFQPPAYPALGQPATTLAQFQTPVQDLCLAYRDS 360
VLKDAVAVKSQALAMVPGTPPTPTQVLFQPPAYPALGQPATTLAQFQTPVQDLCLAYRDS
Sbjct: 301 VLKDAVAVKSQALAMVPGTPPTPTQVLFQPPAYPALGQPATTLAQFQTPVQDLCLAYRDS 360
Query: 361 LQAHRSGSLLSGSTGSSLHTPYQPLQPLDMCPVPVPASLSMHMAIAAEPRHCLATTYGSS 420
LQAHRSGSLLSGSTGSSLHTPYQPLQPLDMCPVPVPASLSMHMAIAAEPRHCLATTYGSS
Sbjct: 361 LQAHRSGSLLSGSTGSSLHTPYQPLQPLDMCPVPVPASLSMHMAIAAEPRHCLATTYGSS 420
Query: 421 YFSGSHMFPTGCFDR 435
YFSGSHMFPTGCFDR
Sbjct: 421 YFSGSHMFPTGCFDR 435
>gi|197276674 cyclin J isoform 1 [Homo sapiens]
Length = 383
Score = 285 bits (730), Expect = 4e-77
Identities = 173/442 (39%), Positives = 240/442 (54%), Gaps = 69/442 (15%)
Query: 2 MDEPWWEGRVASDVHCTLREKELKLPTFRAHSPLLKSRRFFVDILTLLSSHCQLCPAARH 61
++ WW G++A+D+H LR KELKLP+++ SP L RR+F D++ ++S+ LCP+ARH
Sbjct: 3 LEGQWWRGQLAADIHQALRYKELKLPSYKGQSPQLSLRRYFADLIAIVSNRFTLCPSARH 62
Query: 62 LAVYLLDHFMDRYNVTTSKQLYTVAVSCLLLANGVSLLSPRLKCSGMISAHCNLHLPGSS 121
LAVYLLD FMDRY+++ +QL+ VA+SCLLLA+
Sbjct: 63 LAVYLLDLFMDRYDISI-QQLHLVALSCLLLAS--------------------------- 94
Query: 122 NSPASAPHPPPTPPQVAETTGKFEDREDHVPKLEQINSTRILSSQNFTLTKKELLSTELL 181
KFE++ED VPKLEQ+NS +++ N LTK+ LL ELL
Sbjct: 95 ---------------------KFEEKEDSVPKLEQLNSLGCMTNMNLVLTKQNLLHMELL 133
Query: 182 LLEAFSWNLCLPTPAHFLDYYLLASVSQKDHHCHTWPTTCPRKTKECLKEYAHYFLEVTL 241
LLE F WNLCLPT AHF++YYL +V + D H WP C KTK + +YA YFLEV+L
Sbjct: 134 LLETFQWNLCLPTAAHFIEYYLSEAVHETDLH-DGWPMICLEKTKLYMAKYADYFLEVSL 192
Query: 242 QDHIFYKFQPSVVAAACVGASRICLQLSPYWTRDLQRISSYSLEHLSTCIEILLVVYDNV 301
QD+ F + PS+VAAACV +SRI L+LSP W L R+++YS + L CIE LL+ +DN
Sbjct: 193 QDYAFLNYAPSLVAAACVASSRIILRLSPTWPTRLHRLTAYSWDFLVQCIERLLIAHDND 252
Query: 302 LKDAVAVKSQA------LAMVPGTPPTPTQVLFQPPAYPALGQPATTLAQFQTPVQDLCL 355
+K+A + QA L++ V FQ P Y L Q T Q++ P +
Sbjct: 253 VKEANKQRGQAGPQSAQLSVFQTASQPSRPVHFQQPQY--LHQTHQTSLQYRHPTSEQPS 310
Query: 356 AYRDSLQAHRSGSLLSGSTGSSLHTPYQPLQPLDMCPVPVPASLSMHMAIAAEPRHCLAT 415
+ H S L + + T Q L + + M +AI E + CL+
Sbjct: 311 CQQIVSTTHTSSYTLQ-TCPAGFQTSVQGLGHMQ-------TGVGMSLAIPVEVKPCLSV 362
Query: 416 TYGSSYFSGSHMFP--TGCFDR 435
+Y SY H +P T CF+R
Sbjct: 363 SYNRSYQINEH-YPCITPCFER 383
>gi|40254889 cyclin J isoform 2 [Homo sapiens]
Length = 372
Score = 267 bits (682), Expect = 2e-71
Identities = 169/442 (38%), Positives = 233/442 (52%), Gaps = 80/442 (18%)
Query: 2 MDEPWWEGRVASDVHCTLREKELKLPTFRAHSPLLKSRRFFVDILTLLSSHCQLCPAARH 61
++ WW G++A+D+H LR KELKLP+++ SP L RR+F D++ ++S+ LCP+ARH
Sbjct: 3 LEGQWWRGQLAADIHQALRYKELKLPSYKGQSPQLSLRRYFADLIAIVSNRFTLCPSARH 62
Query: 62 LAVYLLDHFMDRYNVTTSKQLYTVAVSCLLLANGVSLLSPRLKCSGMISAHCNLHLPGSS 121
LAVYLLD FMDRY+++ +QL+ VA+SCLLLA+
Sbjct: 63 LAVYLLDLFMDRYDISI-QQLHLVALSCLLLAS--------------------------- 94
Query: 122 NSPASAPHPPPTPPQVAETTGKFEDREDHVPKLEQINSTRILSSQNFTLTKKELLSTELL 181
KFE++ED VPKLEQ+NS +++ N LTK+ LL ELL
Sbjct: 95 ---------------------KFEEKEDSVPKLEQLNSLGCMTNMNLVLTKQNLLHMELL 133
Query: 182 LLEAFSWNLCLPTPAHFLDYYLLASVSQKDHHCHTWPTTCPRKTKECLKEYAHYFLEVTL 241
LLE F WNLCLPT AHF++YYL +V + D H WP C KTK + +YA YFLEV+L
Sbjct: 134 LLETFQWNLCLPTAAHFIEYYLSEAVHETDLH-DGWPMICLEKTKLYMAKYADYFLEVSL 192
Query: 242 QDHIFYKFQPSVVAAACVGASRICLQLSPYWTRDLQRISSYSLEHLSTCIEILLVVYDNV 301
Q VAAACV +SRI L+LSP W L R+++YS + L CIE LL+ +DN
Sbjct: 193 Q-----------VAAACVASSRIILRLSPTWPTRLHRLTAYSWDFLVQCIERLLIAHDND 241
Query: 302 LKDAVAVKSQA------LAMVPGTPPTPTQVLFQPPAYPALGQPATTLAQFQTPVQDLCL 355
+K+A + QA L++ V FQ P Y L Q T Q++ P +
Sbjct: 242 VKEANKQRGQAGPQSAQLSVFQTASQPSRPVHFQQPQY--LHQTHQTSLQYRHPTSEQPS 299
Query: 356 AYRDSLQAHRSGSLLSGSTGSSLHTPYQPLQPLDMCPVPVPASLSMHMAIAAEPRHCLAT 415
+ H S L + + T Q L + + M +AI E + CL+
Sbjct: 300 CQQIVSTTHTSSYTLQ-TCPAGFQTSVQGLGHMQ-------TGVGMSLAIPVEVKPCLSV 351
Query: 416 TYGSSYFSGSHMFP--TGCFDR 435
+Y SY H +P T CF+R
Sbjct: 352 SYNRSYQINEH-YPCITPCFER 372
>gi|197276676 cyclin J isoform 3 [Homo sapiens]
Length = 371
Score = 265 bits (677), Expect = 6e-71
Identities = 168/442 (38%), Positives = 232/442 (52%), Gaps = 81/442 (18%)
Query: 2 MDEPWWEGRVASDVHCTLREKELKLPTFRAHSPLLKSRRFFVDILTLLSSHCQLCPAARH 61
++ WW G++A+D+H LR KELKLP+++ SP L RR+F D++ ++S+ LCP+ARH
Sbjct: 3 LEGQWWRGQLAADIHQALRYKELKLPSYKGQSPQLSLRRYFADLIAIVSNRFTLCPSARH 62
Query: 62 LAVYLLDHFMDRYNVTTSKQLYTVAVSCLLLANGVSLLSPRLKCSGMISAHCNLHLPGSS 121
LAVYLLD FMDRY+++ +QL+ VA+SCLLLA+
Sbjct: 63 LAVYLLDLFMDRYDISI-QQLHLVALSCLLLAS--------------------------- 94
Query: 122 NSPASAPHPPPTPPQVAETTGKFEDREDHVPKLEQINSTRILSSQNFTLTKKELLSTELL 181
KFE++ED VPKLEQ+NS +++ N LTK+ LL ELL
Sbjct: 95 ---------------------KFEEKEDSVPKLEQLNSLGCMTNMNLVLTKQNLLHMELL 133
Query: 182 LLEAFSWNLCLPTPAHFLDYYLLASVSQKDHHCHTWPTTCPRKTKECLKEYAHYFLEVTL 241
LLE F WNLCLPT AHF++YYL +V + D H WP C KTK + +YA YFLEV+L
Sbjct: 134 LLETFQWNLCLPTAAHFIEYYLSEAVHETDLH-DGWPMICLEKTKLYMAKYADYFLEVSL 192
Query: 242 QDHIFYKFQPSVVAAACVGASRICLQLSPYWTRDLQRISSYSLEHLSTCIEILLVVYDNV 301
Q AAACV +SRI L+LSP W L R+++YS + L CIE LL+ +DN
Sbjct: 193 Q------------AAACVASSRIILRLSPTWPTRLHRLTAYSWDFLVQCIERLLIAHDND 240
Query: 302 LKDAVAVKSQA------LAMVPGTPPTPTQVLFQPPAYPALGQPATTLAQFQTPVQDLCL 355
+K+A + QA L++ V FQ P Y L Q T Q++ P +
Sbjct: 241 VKEANKQRGQAGPQSAQLSVFQTASQPSRPVHFQQPQY--LHQTHQTSLQYRHPTSEQPS 298
Query: 356 AYRDSLQAHRSGSLLSGSTGSSLHTPYQPLQPLDMCPVPVPASLSMHMAIAAEPRHCLAT 415
+ H S L + + T Q L + + M +AI E + CL+
Sbjct: 299 CQQIVSTTHTSSYTLQ-TCPAGFQTSVQGLGHMQ-------TGVGMSLAIPVEVKPCLSV 350
Query: 416 TYGSSYFSGSHMFP--TGCFDR 435
+Y SY H +P T CF+R
Sbjct: 351 SYNRSYQINEH-YPCITPCFER 371
>gi|222446642 solute carrier family 36, member 3 isoform 1 [Homo
sapiens]
Length = 511
Score = 55.1 bits (131), Expect = 1e-07
Identities = 40/87 (45%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 48 LLSSHCQ--LCPAARHLAVYLLDHFMDRYNVTTSKQLYTVAVSCLLLANGV-----SLLS 100
+L+ HC L A+HL+ L F++ Y T L T + L A+ V LS
Sbjct: 84 VLTVHCMVILLNCAQHLSQRLQKTFVN-YGEATMYGLETCP-NTWLRAHAVWGRWNLALS 141
Query: 101 PRLKCSGMISAHCNLHLPGSSNSPASA 127
PRL+CSG ISAHCN HL GSSNSPA A
Sbjct: 142 PRLECSGKISAHCNPHLQGSSNSPAQA 168
>gi|6005810 mitogen-activated protein kinase kinase kinase kinase 1
isoform 2 [Homo sapiens]
Length = 833
Score = 52.4 bits (124), Expect = 8e-07
Identities = 24/28 (85%), Positives = 25/28 (89%)
Query: 100 SPRLKCSGMISAHCNLHLPGSSNSPASA 127
SPRL+CSG IS HCNL LPGSSNSPASA
Sbjct: 797 SPRLECSGTISPHCNLLLPGSSNSPASA 824
>gi|4502613 cyclin A [Homo sapiens]
Length = 432
Score = 51.6 bits (122), Expect = 1e-06
Identities = 70/291 (24%), Positives = 106/291 (36%), Gaps = 79/291 (27%)
Query: 14 DVHCTLREKELKLPT---FRAHSPLLKS--RRFFVDILTLLSSHCQLCPAARHLAVYLLD 68
D+H LRE E+K + P + + R VD L + +L HLAV +D
Sbjct: 181 DIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYID 240
Query: 69 HFMDRYNVTTSKQLYTVAVSCLLLANGVSLLSPRLKCSGMISAHCNLHLPGSSNSPASAP 128
F+ +V K L V + +LLA+ + P
Sbjct: 241 RFLSSMSVLRGK-LQLVGTAAMLLASKFEEIYP--------------------------- 272
Query: 129 HPPPTPPQVAETTGKFEDREDHVPKLEQINSTRILSSQNFTLTKKELLSTELLLLEAFSW 188
P+VAE +D T TKK++L E L+L+ ++
Sbjct: 273 ------PEVAEFVYITDD----------------------TYTKKQVLRMEHLVLKVLTF 304
Query: 189 NLCLPTPAHFLDYYLLASVSQKDHHCHTWPTTCPRKTKECLKEYAHYFLEVTLQD-HIFY 247
+L PT FL Y L H P C ++ A + E++L D +
Sbjct: 305 DLAAPTVNQFLTQYFL----------HQQPANCK------VESLAMFLGELSLIDADPYL 348
Query: 248 KFQPSVVAAACVGASRICLQLSPYWTRDLQRISSYSLEHLSTCIEILLVVY 298
K+ PSV+A A + + W L R + Y+LE L C+ L Y
Sbjct: 349 KYLPSVIAGAAFHLA-LYTVTGQSWPESLIRKTGYTLESLKPCLMDLHQTY 398
>gi|170932471 hypothetical protein LOC79703 [Homo sapiens]
Length = 677
Score = 51.6 bits (122), Expect = 1e-06
Identities = 25/43 (58%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 86 AVSCLLLANGVSLLSPRLKCSGMISAHCNLHLPGSSNSPASAP 128
A+ C+ ++LL PR +CSG +SAHCNLHLPGSS+S AS P
Sbjct: 99 ALHCVTTRWSLTLL-PRPECSGAVSAHCNLHLPGSSDSHASVP 140
>gi|58533176 zinc finger, matrin type 1 isoform 1 [Homo sapiens]
Length = 638
Score = 50.8 bits (120), Expect = 2e-06
Identities = 26/40 (65%), Positives = 30/40 (75%), Gaps = 7/40 (17%)
Query: 102 RLKCSGMISAHCNLHLPGSSNSPASAPHPPPTPPQVAETT 141
RL+CSG ISAHC+LHLPGSS+SPASA Q+A TT
Sbjct: 8 RLECSGAISAHCSLHLPGSSDSPASA-------SQIAGTT 40
>gi|34147532 myosin, light chain 10, regulatory [Homo sapiens]
Length = 226
Score = 50.4 bits (119), Expect = 3e-06
Identities = 31/60 (51%), Positives = 35/60 (58%)
Query: 99 LSPRLKCSGMISAHCNLHLPGSSNSPASAPHPPPTPPQVAETTGKFEDREDHVPKLEQIN 158
LSPRL+ +GMISAHCNL L GSSNSPASA Q + ED D L +IN
Sbjct: 61 LSPRLERNGMISAHCNLCLTGSSNSPASASQAFTIMDQNRDGFIDKEDLRDTFAALGRIN 120
>gi|219881538 hypothetical protein LOC199870 isoform 2 [Homo
sapiens]
Length = 312
Score = 50.1 bits (118), Expect = 4e-06
Identities = 21/26 (80%), Positives = 25/26 (96%)
Query: 102 RLKCSGMISAHCNLHLPGSSNSPASA 127
RL+C+G ISAHCNLHLPGSS+SPAS+
Sbjct: 49 RLECNGTISAHCNLHLPGSSDSPASS 74
>gi|219881536 hypothetical protein LOC199870 isoform 1 [Homo
sapiens]
Length = 341
Score = 50.1 bits (118), Expect = 4e-06
Identities = 21/26 (80%), Positives = 25/26 (96%)
Query: 102 RLKCSGMISAHCNLHLPGSSNSPASA 127
RL+C+G ISAHCNLHLPGSS+SPAS+
Sbjct: 49 RLECNGTISAHCNLHLPGSSDSPASS 74
>gi|237858664 hypothetical protein LOC123207 isoform b [Homo
sapiens]
Length = 167
Score = 50.1 bits (118), Expect = 4e-06
Identities = 22/29 (75%), Positives = 26/29 (89%)
Query: 99 LSPRLKCSGMISAHCNLHLPGSSNSPASA 127
LSP+L+CSG++ AHCNLHL GSS SPASA
Sbjct: 138 LSPKLECSGVVLAHCNLHLLGSSYSPASA 166
>gi|111118986 alpha-1A-adrenergic receptor isoform 2 [Homo sapiens]
Length = 475
Score = 48.9 bits (115), Expect = 9e-06
Identities = 26/41 (63%), Positives = 28/41 (68%), Gaps = 7/41 (17%)
Query: 102 RLKCSGMISAHCNLHLPGSSNSPASAPHPPPTPPQVAETTG 142
RL+CSGMI AHCNL LPGS +SPASA Q A TTG
Sbjct: 431 RLECSGMILAHCNLRLPGSRDSPASA-------SQAAGTTG 464
>gi|16950655 cyclin D1 [Homo sapiens]
Length = 295
Score = 46.6 bits (109), Expect = 4e-05
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 21/145 (14%)
Query: 169 TLTKKELLSTELLLLEAFSWNLCLPTPAHFLDYYLLASVSQKDHHCHTWPTTCPRKTKEC 228
++ +ELL ELLL+ WNL TP F++++L +++ K+
Sbjct: 131 SIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEAEEN-------------KQI 177
Query: 229 LKEYAHYFLEVTLQDHIFYKFQPSVVAAACVGASRICLQL-SP-----YW--TRDLQRIS 280
++++A F+ + D F PS+VAA V A+ L L SP Y+ TR L R+
Sbjct: 178 IRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVI 237
Query: 281 SYSLEHLSTCIEILLVVYDNVLKDA 305
+ L C E + + ++ L+ A
Sbjct: 238 KCDPDCLRACQEQIEALLESSLRQA 262
>gi|161377472 cyclin A1 isoform c [Homo sapiens]
Length = 421
Score = 45.8 bits (107), Expect = 8e-05
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 23/133 (17%)
Query: 169 TLTKKELLSTELLLLEAFSWNLCLPTPAHFLDYYLLASVSQKDHHCHTWPTTCPRKTKEC 228
T TK++LL E LLL+ +++L +PT FL YL R+ C
Sbjct: 274 TYTKRQLLKMEHLLLKVLAFDLTVPTTNQFLLQYL-------------------RRQGVC 314
Query: 229 LK--EYAHYFLEVT-LQDHIFYKFQPSVVAAACVGASRICLQLSPYWTRDLQRISSYSLE 285
++ A Y E++ L+ F K+ PS++AAA + + +W L + YSL
Sbjct: 315 VRTENLAKYVAELSLLEADPFLKYLPSLIAAAAFCLANYTVN-KHFWPETLAAFTGYSLS 373
Query: 286 HLSTCIEILLVVY 298
+ C+ L Y
Sbjct: 374 EIVPCLSELHKAY 386
>gi|161377470 cyclin A1 isoform c [Homo sapiens]
Length = 421
Score = 45.8 bits (107), Expect = 8e-05
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 23/133 (17%)
Query: 169 TLTKKELLSTELLLLEAFSWNLCLPTPAHFLDYYLLASVSQKDHHCHTWPTTCPRKTKEC 228
T TK++LL E LLL+ +++L +PT FL YL R+ C
Sbjct: 274 TYTKRQLLKMEHLLLKVLAFDLTVPTTNQFLLQYL-------------------RRQGVC 314
Query: 229 LK--EYAHYFLEVT-LQDHIFYKFQPSVVAAACVGASRICLQLSPYWTRDLQRISSYSLE 285
++ A Y E++ L+ F K+ PS++AAA + + +W L + YSL
Sbjct: 315 VRTENLAKYVAELSLLEADPFLKYLPSLIAAAAFCLANYTVN-KHFWPETLAAFTGYSLS 373
Query: 286 HLSTCIEILLVVY 298
+ C+ L Y
Sbjct: 374 EIVPCLSELHKAY 386
>gi|161377468 cyclin A1 isoform b [Homo sapiens]
Length = 464
Score = 45.8 bits (107), Expect = 8e-05
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 23/133 (17%)
Query: 169 TLTKKELLSTELLLLEAFSWNLCLPTPAHFLDYYLLASVSQKDHHCHTWPTTCPRKTKEC 228
T TK++LL E LLL+ +++L +PT FL YL R+ C
Sbjct: 317 TYTKRQLLKMEHLLLKVLAFDLTVPTTNQFLLQYL-------------------RRQGVC 357
Query: 229 LK--EYAHYFLEVT-LQDHIFYKFQPSVVAAACVGASRICLQLSPYWTRDLQRISSYSLE 285
++ A Y E++ L+ F K+ PS++AAA + + +W L + YSL
Sbjct: 358 VRTENLAKYVAELSLLEADPFLKYLPSLIAAAAFCLANYTVN-KHFWPETLAAFTGYSLS 416
Query: 286 HLSTCIEILLVVY 298
+ C+ L Y
Sbjct: 417 EIVPCLSELHKAY 429
>gi|4502611 cyclin A1 isoform a [Homo sapiens]
Length = 465
Score = 45.8 bits (107), Expect = 8e-05
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 23/133 (17%)
Query: 169 TLTKKELLSTELLLLEAFSWNLCLPTPAHFLDYYLLASVSQKDHHCHTWPTTCPRKTKEC 228
T TK++LL E LLL+ +++L +PT FL YL R+ C
Sbjct: 318 TYTKRQLLKMEHLLLKVLAFDLTVPTTNQFLLQYL-------------------RRQGVC 358
Query: 229 LK--EYAHYFLEVT-LQDHIFYKFQPSVVAAACVGASRICLQLSPYWTRDLQRISSYSLE 285
++ A Y E++ L+ F K+ PS++AAA + + +W L + YSL
Sbjct: 359 VRTENLAKYVAELSLLEADPFLKYLPSLIAAAAFCLANYTVN-KHFWPETLAAFTGYSLS 417
Query: 286 HLSTCIEILLVVY 298
+ C+ L Y
Sbjct: 418 EIVPCLSELHKAY 430
>gi|148839316 NIMA-related kinase 4 [Homo sapiens]
Length = 841
Score = 45.4 bits (106), Expect = 1e-04
Identities = 27/53 (50%), Positives = 32/53 (60%), Gaps = 7/53 (13%)
Query: 99 LSPRLKCSGMISAHCNLHLPGSSNSPASAPHPPPTPPQVAETTGKFEDREDHV 151
LSP+L+CSG I AH NL L GSS+SPASA +VA TG +D V
Sbjct: 460 LSPKLECSGTILAHSNLRLLGSSDSPASA-------SRVAGITGVCHHAQDQV 505
>gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo sapiens]
Length = 183
Score = 45.4 bits (106), Expect = 1e-04
Identities = 22/30 (73%), Positives = 26/30 (86%)
Query: 98 LLSPRLKCSGMISAHCNLHLPGSSNSPASA 127
+LSPRL+ SG+ISAHCNLHL SS+S ASA
Sbjct: 27 VLSPRLEPSGVISAHCNLHLLASSDSSASA 56
>gi|118442834 RPGRIP1-like isoform a [Homo sapiens]
Length = 1315
Score = 45.1 bits (105), Expect = 1e-04
Identities = 21/29 (72%), Positives = 22/29 (75%)
Query: 99 LSPRLKCSGMISAHCNLHLPGSSNSPASA 127
LSP L CS ISAHCN LPGSS+ PASA
Sbjct: 1102 LSPGLGCSSAISAHCNFRLPGSSDFPASA 1130
>gi|66348062 fumarylacetoacetate hydrolase domain containing 1
isoform 1 [Homo sapiens]
Length = 248
Score = 45.1 bits (105), Expect = 1e-04
Identities = 18/29 (62%), Positives = 25/29 (86%)
Query: 99 LSPRLKCSGMISAHCNLHLPGSSNSPASA 127
LSP+L+CS I+AHC+L LPGSSN P+++
Sbjct: 218 LSPKLECSSAITAHCSLELPGSSNPPSAS 246
>gi|14327896 cyclin B1 [Homo sapiens]
Length = 433
Score = 44.7 bits (104), Expect = 2e-04
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 29/142 (20%)
Query: 169 TLTKKELLSTELLLLEAFSWNLCLPTPAHFLDYYLLASVSQKDHHCHTWPTTCPRKTKEC 228
T TK ++ E+ +L A ++ L P P HFL + + + D HT
Sbjct: 276 TYTKHQIRQMEMKILRALNFGLGRPLPLHFL--RRASKIGEVDVEQHT------------ 321
Query: 229 LKEYAHYFLEVTLQDHIFYKFQPSVVAAACVGASRICLQL--SPYWTRDLQRISSYSLEH 286
A Y +E+T+ D+ F PS +AA GA + L++ + WT LQ SY+ E
Sbjct: 322 ---LAKYLMELTMLDYDMVHFPPSQIAA---GAFCLALKILDNGEWTPTLQHYLSYTEES 375
Query: 287 LSTCIEILLVVYDNVLKDAVAV 308
LL V ++ K+ V V
Sbjct: 376 -------LLPVMQHLAKNVVMV 390
>gi|231571356 nitric oxide synthase 3 isoform 4 [Homo sapiens]
Length = 629
Score = 44.3 bits (103), Expect = 2e-04
Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 14/83 (16%)
Query: 71 MDRYNVTTSKQLYTVAVSCLLLANGVS-------LLSPRLKCSGMISAHCNLHLPGSSNS 123
MD Y+V + + V V NG L PRL+CS I+AHC+L+L SSN
Sbjct: 553 MDEYDVVSLEHETLVLVVTSTFGNGDPPENGEGLTLWPRLECSSTITAHCSLNLLDSSN- 611
Query: 124 PASAPHPPPTPPQVAETTGKFED 146
PP + QV TTG D
Sbjct: 612 ------PPTSTSQVVGTTGACHD 628
>gi|28372523 intraflagellar transport protein IFT20 [Homo sapiens]
Length = 148
Score = 44.3 bits (103), Expect = 2e-04
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 99 LSPRLKCSGMISAHCNLHLPGSSNSPASAPHPPPTPPQVAETTGKFEDREDHVPKLEQIN 158
+SPRL+C+G ISAHC L L SS+SP S P +V TTG + + +
Sbjct: 75 VSPRLECTGAISAHCKLCLSDSSDSPTS-------PSRVGGTTGHRCSELAQIYSKAERS 127
Query: 159 STRILSSQN 167
ST SS N
Sbjct: 128 STAATSSPN 136
>gi|4502617 cyclin D2 [Homo sapiens]
Length = 289
Score = 43.9 bits (102), Expect = 3e-04
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 21/143 (14%)
Query: 169 TLTKKELLSTELLLLEAFSWNLCLPTPAHFLDYYLLASVSQKDHHCHTWPTTCPRKTKEC 228
++ +ELL EL++L WNL TP F+++ L Q R+
Sbjct: 130 SIKPQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQ-------------REKLSL 176
Query: 229 LKEYAHYFLEVTLQDHIFYKFQPSVVAAACVGASRICLQ--------LSPYWTRDLQRIS 280
++++A F+ + D F + PS++A VGA+ LQ T L +I+
Sbjct: 177 IRKHAQTFIALCATDFKFAMYPPSMIATGSVGAAICGLQQDEEVSSLTCDALTELLAKIT 236
Query: 281 SYSLEHLSTCIEILLVVYDNVLK 303
+ ++ L C E + V N L+
Sbjct: 237 NTDVDCLKACQEQIEAVLLNSLQ 259
>gi|217035093 cyclic nucleotide gated channel alpha 1 isoform 1
[Homo sapiens]
Length = 759
Score = 43.1 bits (100), Expect = 5e-04
Identities = 18/23 (78%), Positives = 21/23 (91%)
Query: 100 SPRLKCSGMISAHCNLHLPGSSN 122
SPRL+CSG ISAHC+LHLP SS+
Sbjct: 6 SPRLECSGAISAHCSLHLPDSSD 28
>gi|78000165 sorbin and SH3 domain containing 1 isoform 4 [Homo
sapiens]
Length = 1151
Score = 43.1 bits (100), Expect = 5e-04
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 97 SLLSPRLKCSGMISAHCNLHLPGSSNSPASA 127
S++SPRL+CSG + AHC+L L SSN P SA
Sbjct: 438 SVMSPRLECSGTVIAHCSLKLLDSSNPPTSA 468
>gi|239744440 PREDICTED: hypothetical protein XP_002343124 [Homo
sapiens]
Length = 261
Score = 41.6 bits (96), Expect = 0.001
Identities = 21/29 (72%), Positives = 23/29 (79%)
Query: 99 LSPRLKCSGMISAHCNLHLPGSSNSPASA 127
L PRL+ SG ISA CNL L GSS+SPASA
Sbjct: 10 LYPRLEFSGTISARCNLRLLGSSDSPASA 38
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.133 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,289,533
Number of Sequences: 37866
Number of extensions: 974822
Number of successful extensions: 7299
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 7042
Number of HSP's gapped (non-prelim): 269
length of query: 435
length of database: 18,247,518
effective HSP length: 105
effective length of query: 330
effective length of database: 14,271,588
effective search space: 4709624040
effective search space used: 4709624040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.