Guide to the Human Genome
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Name: SPATA7 Sequence: fasta or formatted (567aa) NCBI GI: 94536850
Description:

spermatogenesis-associated protein 7 isoform b

Referenced in:

Testes and Sperm

Other entries for this name:
alt prot [599aa] spermatogenesis-associated protein 7 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         24           2
 C cysteine            1.4          8           1
 D aspartate           6.2         35           2
 E glutamate           9.3         53           3
 F phenylalanine       3.9         22           2
 G glycine             3.5         20           1
 H histidine           2.5         14           1
 I isoleucine          3.9         22           2
 K lysine              8.5         48           2
 L leucine             9.5         54           2
 M methionine          2.5         14           1
 N asparagine          5.3         30           2
 P proline             5.3         30           2
 Q glutamine           4.2         24           2
 R arginine            4.6         26           2
 S serine             12.3         70           4
 T threonine           5.6         32           1
 V valine              4.6         26           1
 W tryptophan          0.2          1           1
 Y tyrosine            2.5         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   spermatogenesis-associated protein 7 isoform b [Homo... 
SPATA7                0.985   spermatogenesis-associated protein 7 isoform a [Homo...
DST                   0.015   dystonin isoform 4 
DST                   0.015   dystonin isoform 3 
DST                   0.015   dystonin isoform 2 
DST                   0.015   dystonin isoform 1 
DST                   0.015   dystonin isoform 1eA precursor 
DST                   0.014   dystonin isoform 1eB precursor 
DST                   0.014   dystonin isoform 1e precursor 
SMC4                  0.011   SMC4 structural maintenance of chromosomes 4-like 1 ...
SMC4                  0.011   SMC4 structural maintenance of chromosomes 4-like 1 ...
ERC1                  0.010   RAB6-interacting protein 2 isoform epsilon 
ERC1                  0.010   RAB6-interacting protein 2 isoform delta 
CCDC136               0.008   coiled-coil domain containing 136 
CMYA5                 0.008   cardiomyopathy associated 5 
SGOL2                 0.007   shugoshin-like 2 isoform 2 
SGOL2                 0.007   shugoshin-like 2 isoform 1 
SGOL2                 0.007   shugoshin-like 2 isoform 3 
C14orf106             0.007   chromosome 14 open reading frame 106 
FAM184B               0.007   hypothetical protein LOC27146 
BNIP1                 0.007   BCL2/adenovirus E1B 19kD interacting protein 1 isof...
ZNF280D               0.007   suppressor of hairy wing homolog 4 isoform 2 
ZNF280D               0.007   suppressor of hairy wing homolog 4 isoform 1 
CCDC83                0.007   coiled-coil domain containing 83 
UBTF                  0.007   upstream binding transcription factor, RNA polymera...
UBTF                  0.007   upstream binding transcription factor, RNA polymera...
UBTF                  0.007   upstream binding transcription factor, RNA polymerase...
ZC4H2                 0.007   zinc finger, C4H2 domain containing 
TTBK1                 0.006   tau tubulin kinase 1 
CEP135                0.006   centrosome protein 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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