Guide to the Human Genome
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Name: RHBDF2 Sequence: fasta or formatted (827aa) NCBI GI: 93352558
Description:

rhomboid, veinlet-like 6 isoform 2

Referenced in:

Serine Proteases

Other entries for this name:
alt prot [856aa] rhomboid, veinlet-like 6 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         52           4
 C cysteine            3.1         26           2
 D aspartate           4.4         36           2
 E glutamate           5.2         43           2
 F phenylalanine       5.7         47           2
 G glycine             6.5         54           2
 H histidine           3.4         28           2
 I isoleucine          5.0         41           2
 K lysine              4.6         38           2
 L leucine             9.9         82           3
 M methionine          1.6         13           1
 N asparagine          1.7         14           1
 P proline             6.9         57           3
 Q glutamine           4.7         39           2
 R arginine            7.0         58           2
 S serine              9.4         78           3
 T threonine           4.1         34           2
 V valine              5.8         48           2
 W tryptophan          2.2         18           1
 Y tyrosine            2.5         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   rhomboid, veinlet-like 6 isoform 2 
RHBDF2                0.991   rhomboid, veinlet-like 6 isoform 1 
RHBDF1                0.560   rhomboid family 1 
RHBDL2                0.018   rhomboid protease 2 
RHBDL3                0.017   rhomboid protease 3 
RHBDL1                0.011   rhomboid protease 1 
SRRM1                 0.008   serine/arginine repetitive matrix 1 
LOC645971             0.007   PREDICTED: similar to hCG2036794 
LOC645971             0.007   PREDICTED: similar to hCG2036794 
LOC645971             0.007   PREDICTED: similar to hCG2036794 
LOC651856             0.005   PREDICTED: similar to hCG2023245 
LOC100292143          0.005   PREDICTED: hypothetical protein 
LOC100132261          0.005   PREDICTED: similar to hCG2023245 
PHLPP2                0.004   PH domain and leucine rich repeat protein phosphatas...
GNAS                  0.004   GNAS complex locus NESP55 
PLAC4                 0.004   placenta-specific 4 
SOX11                 0.004   SRY-box 11 
NOTCH1                0.004   notch1 preproprotein 
RPS6KL1               0.004   ribosomal protein S6 kinase-like 1 
TACC2                 0.004   transforming, acidic coiled-coil containing protein...
TACC2                 0.004   transforming, acidic coiled-coil containing protein ...
TACC2                 0.004   transforming, acidic coiled-coil containing protein ...
TACC2                 0.004   transforming, acidic coiled-coil containing protein ...
IKBKG                 0.004   inhibitor of kappa light polypeptide gene enhancer ...
IKBKG                 0.004   inhibitor of kappa light polypeptide gene enhancer ...
IKBKG                 0.004   inhibitor of kappa light polypeptide gene enhancer in...
IKBKG                 0.004   inhibitor of kappa light polypeptide gene enhancer ...
MAML2                 0.004   mastermind-like 2 
MLL2                  0.004   myeloid/lymphoid or mixed-lineage leukemia 2 
ZZEF1                 0.004   zinc finger, ZZ type with EF hand domain 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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