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Search of human proteins with 93141208
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|93141208 SLAIN motif family, member 1 A [Homo sapiens]
(349 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|93141208 SLAIN motif family, member 1 A [Homo sapiens] 701 0.0
gi|21389389 SLAIN motif family, member 1 B [Homo sapiens] 618 e-177
gi|149588928 SLAIN motif family, member 2 [Homo sapiens] 191 6e-49
gi|50659104 RAB11 family interacting protein 1 isoform 3 [Homo s... 39 0.009
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 38 0.015
gi|120953251 neuron navigator 3 [Homo sapiens] 37 0.026
gi|190343010 SP110 nuclear body protein isoform a [Homo sapiens] 35 0.077
gi|190343008 SP110 nuclear body protein isoform b [Homo sapiens] 35 0.077
gi|190343006 SP110 nuclear body protein isoform c [Homo sapiens] 35 0.077
gi|7662302 TBK1 binding protein 1 [Homo sapiens] 35 0.13
gi|27886520 nuclear factor of activated T-cells 5 isoform a [Hom... 35 0.13
gi|5729945 nuclear factor of activated T-cells 5 isoform c [Homo... 35 0.13
gi|164419746 nuclear factor of activated T-cells 5 isoform d [Ho... 35 0.13
gi|164419744 nuclear factor of activated T-cells 5 isoform b [Ho... 35 0.13
gi|27886524 nuclear factor of activated T-cells 5 isoform a [Hom... 35 0.13
gi|154759293 cysteine-rich hydrophobic domain 1 [Homo sapiens] 35 0.13
gi|16975496 cortactin binding protein 2 [Homo sapiens] 35 0.13
gi|223941891 protein tyrosine phosphatase, non-receptor type 3 i... 34 0.17
gi|223941888 protein tyrosine phosphatase, non-receptor type 3 i... 34 0.17
gi|223941885 protein tyrosine phosphatase, non-receptor type 3 i... 34 0.17
gi|223941882 protein tyrosine phosphatase, non-receptor type 3 i... 34 0.17
gi|223941879 protein tyrosine phosphatase, non-receptor type 3 i... 34 0.17
gi|223941876 protein tyrosine phosphatase, non-receptor type 3 i... 34 0.17
gi|183396804 Regulation of nuclear pre-mRNA domain containing 2 ... 34 0.17
gi|8923735 family with sequence similarity 48, member A isoform ... 34 0.17
gi|98961135 family with sequence similarity 48, member A isoform... 34 0.17
gi|116805348 trinucleotide repeat containing 6A [Homo sapiens] 34 0.22
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 34 0.22
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 34 0.22
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 34 0.22
>gi|93141208 SLAIN motif family, member 1 A [Homo sapiens]
Length = 349
Score = 701 bits (1809), Expect = 0.0
Identities = 349/349 (100%), Positives = 349/349 (100%)
Query: 1 MEAARRSLCFRLEQGYTSRGSPLSPQSSIDSELSTSELEDDSISMGYKLQDLTDVQIMAR 60
MEAARRSLCFRLEQGYTSRGSPLSPQSSIDSELSTSELEDDSISMGYKLQDLTDVQIMAR
Sbjct: 1 MEAARRSLCFRLEQGYTSRGSPLSPQSSIDSELSTSELEDDSISMGYKLQDLTDVQIMAR 60
Query: 61 LQEESLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSLEDEEEFDHLPPPQPRL 120
LQEESLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSLEDEEEFDHLPPPQPRL
Sbjct: 61 LQEESLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSLEDEEEFDHLPPPQPRL 120
Query: 121 PRCSPFQRGIPHSQTFSSIRECRRSPSSQYFPSNNYQQQQYYSPQAQTPDQQPNRTNGDK 180
PRCSPFQRGIPHSQTFSSIRECRRSPSSQYFPSNNYQQQQYYSPQAQTPDQQPNRTNGDK
Sbjct: 121 PRCSPFQRGIPHSQTFSSIRECRRSPSSQYFPSNNYQQQQYYSPQAQTPDQQPNRTNGDK 180
Query: 181 LRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGISRIQSCIPSPGQLQHR 240
LRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGISRIQSCIPSPGQLQHR
Sbjct: 181 LRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGISRIQSCIPSPGQLQHR 240
Query: 241 VHSVGHFPVSIRQPLKATAYVSPTVQGSSNMPLSNGLQLYSNTGIPTPNKAAASGIMGRS 300
VHSVGHFPVSIRQPLKATAYVSPTVQGSSNMPLSNGLQLYSNTGIPTPNKAAASGIMGRS
Sbjct: 241 VHSVGHFPVSIRQPLKATAYVSPTVQGSSNMPLSNGLQLYSNTGIPTPNKAAASGIMGRS 300
Query: 301 ALPRPSLAINGSNLPRSKIAQPVRSFLQPPKPLSSLSTLRDGNWRDGCY 349
ALPRPSLAINGSNLPRSKIAQPVRSFLQPPKPLSSLSTLRDGNWRDGCY
Sbjct: 301 ALPRPSLAINGSNLPRSKIAQPVRSFLQPPKPLSSLSTLRDGNWRDGCY 349
>gi|21389389 SLAIN motif family, member 1 B [Homo sapiens]
Length = 305
Score = 618 bits (1593), Expect = e-177
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 45 MGYKLQDLTDVQIMARLQEESLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSL 104
MGYKLQDLTDVQIMARLQEESLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSL
Sbjct: 1 MGYKLQDLTDVQIMARLQEESLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSL 60
Query: 105 EDEEEFDHLPPPQPRLPRCSPFQRGIPHSQTFSSIRECRRSPSSQYFPSNNYQQQQYYSP 164
EDEEEFDHLPPPQPRLPRCSPFQRGIPHSQTFSSIRECRRSPSSQYFPSNNYQQQQYYSP
Sbjct: 61 EDEEEFDHLPPPQPRLPRCSPFQRGIPHSQTFSSIRECRRSPSSQYFPSNNYQQQQYYSP 120
Query: 165 QAQTPDQQPNRTNGDKLRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGI 224
QAQTPDQQPNRTNGDKLRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGI
Sbjct: 121 QAQTPDQQPNRTNGDKLRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGI 180
Query: 225 SRIQSCIPSPGQLQHRVHSVGHFPVSIRQPLKATAYVSPTVQGSSNMPLSNGLQLYSNTG 284
SRIQSCIPSPGQLQHRVHSVGHFPVSIRQPLKATAYVSPTVQGSSNMPLSNGLQLYSNTG
Sbjct: 181 SRIQSCIPSPGQLQHRVHSVGHFPVSIRQPLKATAYVSPTVQGSSNMPLSNGLQLYSNTG 240
Query: 285 IPTPNKAAASGIMGRSALPRPSLAINGSNLPRSKIAQPVRSFLQPPKPLSSLSTLRDGNW 344
IPTPNKAAASGIMGRSALPRPSLAINGSNLPRSKIAQPVRSFLQPPKPLSSLSTLRDGNW
Sbjct: 241 IPTPNKAAASGIMGRSALPRPSLAINGSNLPRSKIAQPVRSFLQPPKPLSSLSTLRDGNW 300
Query: 345 RDGCY 349
RDGCY
Sbjct: 301 RDGCY 305
>gi|149588928 SLAIN motif family, member 2 [Homo sapiens]
Length = 581
Score = 191 bits (486), Expect = 6e-49
Identities = 149/366 (40%), Positives = 192/366 (52%), Gaps = 57/366 (15%)
Query: 17 TSRGSPLSPQSSIDSELSTSELEDDSISMGYKLQDLTDVQIMARLQEESLRQDYASTSAS 76
+ R PLSPQSSIDSELS SEL++DSI YKL D+TDVQI+AR+QEESLRQ+YA+T+
Sbjct: 240 SDRNPPLSPQSSIDSELSASELDEDSIGSNYKLNDVTDVQILARMQEESLRQEYAATT-- 297
Query: 77 VSRHSSSVSLSSGKKGTCSDQEYDQYSLEDEEEFDHLPPPQPRLPRCSPFQRGIPHSQTF 136
SR SS S +S ++GT SDQE D SL+DE++ H P + R SP R P
Sbjct: 298 -SRRSSGSSCNSTRRGTFSDQELDAQSLDDEDDNMH-HAVYPAVNRFSPSPRNSPRPSPK 355
Query: 137 SSIRECRRSPSS----QYF-----PSNNYQQQQYYSPQAQTPD-QQPNRTNGDKLRRSMP 186
S R RS S +Y P + QQ S Q D Q N N +KLRRS+P
Sbjct: 356 QSPRNSPRSRSPARGIEYSRVSPQPMISRLQQPRLSLQGHPTDLQTSNVKNEEKLRRSLP 415
Query: 187 NLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGISRIQ---SCIPSPGQLQHRVHS 243
NL+R +T S V++S+S DS+ GI R+Q S IPSPG+ +
Sbjct: 416 NLSRTSNTQVDS--------VKSSRS-DSNFQVPNGGIPRMQPQASAIPSPGKFR---SP 463
Query: 244 VGHFPVSIRQPLKATAYVSPTVQGSSNMPLSNGLQLYSNTGIPTP--------------- 288
P+++RQP+KA + GS + QL T P P
Sbjct: 464 AAPSPLALRQPVKAFSNHGSGSPGSQEI-----TQLTQTTSSPGPPMVQSTVSANPPSNI 518
Query: 289 NKAAASGIMG----RSALPRPSL-AINGSNLPRSKIAQPVRSFLQPPKPLSSLSTLRDGN 343
N A + G RS LPRPS + G +PRSK+AQPVR L PK S ++D +
Sbjct: 519 NSATLTRPAGTTAMRSGLPRPSAPSAGGIPVPRSKLAQPVRRSLPAPKTYGS---MKDDS 575
Query: 344 WRDGCY 349
W+DGCY
Sbjct: 576 WKDGCY 581
>gi|50659104 RAB11 family interacting protein 1 isoform 3 [Homo
sapiens]
Length = 1283
Score = 38.5 bits (88), Expect = 0.009
Identities = 69/300 (23%), Positives = 109/300 (36%), Gaps = 28/300 (9%)
Query: 28 SIDSELSTSELEDDSISM---GYKLQDLTDVQI---MARLQEESLRQDYASTSASVSRHS 81
S D +LS S +D SM Y+ L + MA E+ ++ S SR S
Sbjct: 376 SSDRQLSESSTKDSLKSMTLPSYRPAPLVSGDLRENMAPANSEATKEAKESKKPE-SRRS 434
Query: 82 SSVSLSSGKKGTCSDQEYDQ-YSLEDEEEFDHLPPPQPRLPRCSPFQRGIPHSQTFSSIR 140
S +SL +GKK E + ++ E+ L +P P + + S+ ++
Sbjct: 435 SLLSLMTGKKDVAKGSEGENPLTVPGREKEGMLMGVKPGEDASGPAEDLVRRSEKDTAAV 494
Query: 141 ECRRSPSSQYFPSNNYQQQQYYSPQAQTPDQQPNRTNGDKLRRSMPNL---------ARM 191
R+ S F + + P + + R P L AR+
Sbjct: 495 VSRQGSSLNLFEDVQITEPEAEPESKSEPRPPISSPRAPQTRAVKPRLEVSPEAQPTARL 554
Query: 192 PSTTAISSNISSPVTVRNSQSFDSSL-HGAGNGISRIQSCIPSPGQLQHRVHSVGHFPVS 250
PS T S++ + S S L HGA S S S + S P+S
Sbjct: 555 PSPTDSPSSLPPLPSSSGQASVPSELGHGADTQSSESPSVFSS-------LSSPIAAPIS 607
Query: 251 IRQPLKATAYVSPTVQGSSNMPLSNGLQLYSNTGIPTPNKAAASGIMGRSALPRPSLAIN 310
P+++ V S PL +L + + P PN + S ++G S +PS N
Sbjct: 608 TSTPIESWPLVDRGQAKSEGPPLLPKAELQTESLTPVPN--SGSSVLG-SLFKQPSFPAN 664
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 37.7 bits (86), Expect = 0.015
Identities = 66/292 (22%), Positives = 106/292 (36%), Gaps = 53/292 (18%)
Query: 79 RHSSSVSLSSGKKGTCSDQEYDQYSLEDEEEFDHLPPPQPRLPRCSPFQRGIPHSQTFSS 138
RH S SS G + Q DQ +++ PPQP P P Q H Q S
Sbjct: 133 RHGQSFVDSSSMWGPRAVQVPDQIRAPYQQQQPQPQPPQP-APSGPPAQGHPQHMQQMGS 191
Query: 139 IRECRRSPSSQYFPSNNYQQQQYYSPQ----------------------------AQTPD 170
Y ++ QQ+ PQ + P
Sbjct: 192 -----------YMARGDFSMQQHGQPQQRMSQFSQGQEGLNQGNPFIATSGPGHLSHVPQ 240
Query: 171 QQPNRTNGDKLRRSMPNLARMPSTTAISSNIS-SPVTVRNSQSFDSSLHGAGNGISRIQS 229
Q P+ LR S+ PST +++ SP N + N SR Q+
Sbjct: 241 QSPSM--APSLRHSVQQFHHHPSTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQT 298
Query: 230 CIPSPGQLQHRVHSVGHFPVS-IRQPLKATAYVSPTVQGSSNMPLSNGLQLYSN-TGIPT 287
+PSP +S +P S + Q L ++ + ++N P++ + Y N G P+
Sbjct: 299 -VPSPTINNSGQYS--RYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPS 355
Query: 288 PNKAAASGIMGRSALPRPSLAINGSNLPRSKIAQPVRSFLQPPKPLSSLSTL 339
+ G+M + + PS ++N N +QP ++ PP P+S + +
Sbjct: 356 ---NSGQGLMHQQPI-HPSGSLNQMNTQTMHPSQPQGTYASPP-PMSPMKAM 402
>gi|120953251 neuron navigator 3 [Homo sapiens]
Length = 2363
Score = 37.0 bits (84), Expect = 0.026
Identities = 77/313 (24%), Positives = 119/313 (38%), Gaps = 24/313 (7%)
Query: 40 DDSISMGYKLQDLTDVQIMARLQEESLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEY 99
DDS S+ L D D L S Y++ + SR ++ + S K+ T +D+ +
Sbjct: 881 DDSSSVSSGLSDTLDNISTDDLNTTSSVSSYSNITVP-SRKNTQLRTDSEKRST-TDETW 938
Query: 100 D--QYSLEDEEEFDHLPPPQPRLPRCS------PFQRGIPHSQTFSSIRECRRSPSSQY- 150
D + + EE+FD + S P + G S + S RR S+Q
Sbjct: 939 DSPEELKKPEEDFDSHGDAGGKWKTVSSGLPEDPEKAGQKASLSVSQTGSWRRGMSAQGG 998
Query: 151 FPSNNYQQQQYYSPQAQTPDQQPNRTNGDKLRRSMPNLARMPSTTAISSNISS---PVTV 207
PS +T D + + L+ S +L R PS SS P +
Sbjct: 999 APSRQKAGTSALKTPGKTDDAKASEKGKAPLKGS--SLQRSPSDAGKSSGDEGKKPPSGI 1056
Query: 208 RNSQSFDSSLHGAGNGISRIQSCIPSPGQLQHRVHSVGHFPVSIRQPLKATAYVSPTVQG 267
S + S +G+ S + ++G P S K+ A ++ G
Sbjct: 1057 GRSTATSSFGFKKPSGVGSSAMITSSGATITSGSATLGKIPKSAAIGGKSNAGRKTSLDG 1116
Query: 268 SSNMPLSNGLQLYSNT-----GIPTPNKAAASGIMGRSALPRPSLAINGSNLPRSKIAQP 322
S N L + S T +P P+K++ SGI GR R S + SN+ SK A
Sbjct: 1117 SQNQD-DVVLHVSSKTTLQYRSLPRPSKSSTSGIPGRGG-HRSSTSSIDSNV-SSKSAGA 1173
Query: 323 VRSFLQPPKPLSS 335
S L+ P + S
Sbjct: 1174 TTSKLREPTKIGS 1186
Score = 30.0 bits (66), Expect = 3.2
Identities = 45/191 (23%), Positives = 73/191 (38%), Gaps = 33/191 (17%)
Query: 150 YFPSNNYQQQQYYSPQAQTPDQQPNRTNGDKLRRSMPNLARMPSTTAISSNISSPVTVRN 209
+F + Y+QQQ++ Q +S+ L + + + S S T ++
Sbjct: 176 FFSLSRYKQQQHHQQQYY---------------QSLVELQQRVTHASPPSEASQAKTQQD 220
Query: 210 SQSFDSSLHGAGNGISRIQSCIPSPGQLQHRVHSVGHFPVSIRQPLKATAYVSPTVQGSS 269
QS ++ + + S I + P +L P R P + S VQG+S
Sbjct: 221 MQSSLAARYATQSNHSGIATSQKKPTRL----------PGPSRVPAAGS---SSKVQGAS 267
Query: 270 NMPLSNGLQLYSNTGIPTPNKAAASGIMGRSALPRPSLAINGSNLPRSKIAQPVRSFLQP 329
N L+ Q +++ P A S P+ S +NG+ P S QP S +
Sbjct: 268 N--LNRRSQSFNSIDKNKPPNYANGNEKDSSKGPQSSSGVNGNVQPPSTAGQPPASAIPS 325
Query: 330 P---KPLSSLS 337
P KP S S
Sbjct: 326 PSASKPWRSKS 336
>gi|190343010 SP110 nuclear body protein isoform a [Homo sapiens]
Length = 689
Score = 35.4 bits (80), Expect = 0.077
Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 9/126 (7%)
Query: 113 LPPPQPRLPRCSPFQRGIPH----SQTFSSIRECRRSPSSQYFPSNNYQQQQYYSPQAQT 168
LPPPQP P CSP + SQ I SPS P Q+ + T
Sbjct: 139 LPPPQPPQPSCSPCAPRVSEPGTSSQQSDEILSESPSPSDPVLPLPALIQEG--RSTSVT 196
Query: 169 PDQQPNRTNGDKLRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGISRIQ 228
D+ ++ N ++ MP+L + ST ++S+ P +R+ + H + I+
Sbjct: 197 NDKLTSKMNAEEDSEEMPSL--LTSTVQVASDNLIP-QIRDKEDPQEMPHSPLGSMPEIR 253
Query: 229 SCIPSP 234
P P
Sbjct: 254 DNSPEP 259
>gi|190343008 SP110 nuclear body protein isoform b [Homo sapiens]
Length = 549
Score = 35.4 bits (80), Expect = 0.077
Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 9/126 (7%)
Query: 113 LPPPQPRLPRCSPFQRGIPH----SQTFSSIRECRRSPSSQYFPSNNYQQQQYYSPQAQT 168
LPPPQP P CSP + SQ I SPS P Q+ + T
Sbjct: 139 LPPPQPPQPSCSPCAPRVSEPGTSSQQSDEILSESPSPSDPVLPLPALIQEG--RSTSVT 196
Query: 169 PDQQPNRTNGDKLRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGISRIQ 228
D+ ++ N ++ MP+L + ST ++S+ P +R+ + H + I+
Sbjct: 197 NDKLTSKMNAEEDSEEMPSL--LTSTVQVASDNLIP-QIRDKEDPQEMPHSPLGSMPEIR 253
Query: 229 SCIPSP 234
P P
Sbjct: 254 DNSPEP 259
>gi|190343006 SP110 nuclear body protein isoform c [Homo sapiens]
Length = 713
Score = 35.4 bits (80), Expect = 0.077
Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 9/126 (7%)
Query: 113 LPPPQPRLPRCSPFQRGIPH----SQTFSSIRECRRSPSSQYFPSNNYQQQQYYSPQAQT 168
LPPPQP P CSP + SQ I SPS P Q+ + T
Sbjct: 139 LPPPQPPQPSCSPCAPRVSEPGTSSQQSDEILSESPSPSDPVLPLPALIQEG--RSTSVT 196
Query: 169 PDQQPNRTNGDKLRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGISRIQ 228
D+ ++ N ++ MP+L + ST ++S+ P +R+ + H + I+
Sbjct: 197 NDKLTSKMNAEEDSEEMPSL--LTSTVQVASDNLIP-QIRDKEDPQEMPHSPLGSMPEIR 253
Query: 229 SCIPSP 234
P P
Sbjct: 254 DNSPEP 259
>gi|7662302 TBK1 binding protein 1 [Homo sapiens]
Length = 615
Score = 34.7 bits (78), Expect = 0.13
Identities = 41/181 (22%), Positives = 65/181 (35%), Gaps = 27/181 (14%)
Query: 1 MEAARRSLCFRLEQGYTSRGSPLSPQSSIDSELSTSELEDDSISMGYKLQDLTD----VQ 56
++A L L+Q +R L+ S + DD +++ +LT+ ++
Sbjct: 250 LQAECERLQGELKQLQETRAQDLASNQSERDMAWVKRVGDDQVNLALAYTELTEELGRLR 309
Query: 57 IMARLQEESLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSLEDEEEFDHLPPP 116
++ LQ LR + S + S +S C PP
Sbjct: 310 ELSSLQGRILRTLLQEQARSGGQRHSPLSQRHSPAPQCPSPS----------------PP 353
Query: 117 QPRLPRCSPFQRGIPHSQTFSSIREC-----RRSPSSQYFPSNNYQQQQYYSPQAQTPDQ 171
P C P Q +P Q S + C RRSP+S PS Q++ P Q+P
Sbjct: 354 ARAAPPCPPCQSPVP--QRRSPVPPCPSPQQRRSPASPSCPSPVPQRRSPVPPSCQSPSP 411
Query: 172 Q 172
Q
Sbjct: 412 Q 412
>gi|27886520 nuclear factor of activated T-cells 5 isoform a [Homo
sapiens]
Length = 1455
Score = 34.7 bits (78), Expect = 0.13
Identities = 71/352 (20%), Positives = 123/352 (34%), Gaps = 64/352 (18%)
Query: 24 SPQSSIDSELSTSELEDDSISMGYKLQDLTDVQIMARLQEESLRQDYASTSASVSRH--- 80
SP + S+ ST+ E M + + A LQ S+ QD ST+ +S+
Sbjct: 1019 SPNPIVHSQTSTTSSEQMQPPMFHSQSTI------AVLQGSSVPQDQQSTNIFLSQSPMN 1072
Query: 81 -------------SSSVSLSSGKKGTCSDQEYDQYSLEDEEEFDHLPPPQPRLPRCSPFQ 127
++ S+S + + S+Q Q + + + H+ P + P Q
Sbjct: 1073 NLQTNTVAQEAFFAAPNSISPLQSTSNSEQ---QAAFQQQAPISHIQTPMLSQEQAQPPQ 1129
Query: 128 RGIPHSQTFSSIRECRRSPSSQY----------------FPSNNYQQQQYYSPQAQTPDQ 171
+G+ Q P SQ PS QQQQ Q Q Q
Sbjct: 1130 QGLFQPQVALGSLPPNPMPQSQQGTMFQSQHSIVAMQSNSPSQEQQQQQQQQQQQQQQQQ 1189
Query: 172 QPNRTNGDKLRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGISRIQSCI 231
Q + +M + + P + N +P+ + Q+ S H N Q
Sbjct: 1190 QSILFSNQNTMATMASPKQPPPNMIFNPN-QNPMANQEQQN-QSIFHQQSNMAPMNQEQQ 1247
Query: 232 PSPGQLQHRVHSVGHFPVSIRQPLKATAYVSPTVQGSSNMPL-SNGLQLYSNTGIPTPNK 290
P Q Q V S++ P PT SS PL + Q+ G P+ +
Sbjct: 1248 PMQFQSQSTVS-------SLQNP-------GPTQSESSQTPLFHSSPQIQLVQGSPSSQE 1293
Query: 291 AAASGIMGRSALPRPSLAINGSNLPRSKIAQP------VRSFLQPPKPLSSL 336
+ + +++ +IN ++ +S + P ++ P+P ++L
Sbjct: 1294 QQVTLFLSPASMSALQTSINQQDMQQSPLYSPQNNMPGIQGATSSPQPQATL 1345
>gi|5729945 nuclear factor of activated T-cells 5 isoform c [Homo
sapiens]
Length = 1531
Score = 34.7 bits (78), Expect = 0.13
Identities = 71/352 (20%), Positives = 123/352 (34%), Gaps = 64/352 (18%)
Query: 24 SPQSSIDSELSTSELEDDSISMGYKLQDLTDVQIMARLQEESLRQDYASTSASVSRH--- 80
SP + S+ ST+ E M + + A LQ S+ QD ST+ +S+
Sbjct: 1095 SPNPIVHSQTSTTSSEQMQPPMFHSQSTI------AVLQGSSVPQDQQSTNIFLSQSPMN 1148
Query: 81 -------------SSSVSLSSGKKGTCSDQEYDQYSLEDEEEFDHLPPPQPRLPRCSPFQ 127
++ S+S + + S+Q Q + + + H+ P + P Q
Sbjct: 1149 NLQTNTVAQEAFFAAPNSISPLQSTSNSEQ---QAAFQQQAPISHIQTPMLSQEQAQPPQ 1205
Query: 128 RGIPHSQTFSSIRECRRSPSSQY----------------FPSNNYQQQQYYSPQAQTPDQ 171
+G+ Q P SQ PS QQQQ Q Q Q
Sbjct: 1206 QGLFQPQVALGSLPPNPMPQSQQGTMFQSQHSIVAMQSNSPSQEQQQQQQQQQQQQQQQQ 1265
Query: 172 QPNRTNGDKLRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGISRIQSCI 231
Q + +M + + P + N +P+ + Q+ S H N Q
Sbjct: 1266 QSILFSNQNTMATMASPKQPPPNMIFNPN-QNPMANQEQQN-QSIFHQQSNMAPMNQEQQ 1323
Query: 232 PSPGQLQHRVHSVGHFPVSIRQPLKATAYVSPTVQGSSNMPL-SNGLQLYSNTGIPTPNK 290
P Q Q V S++ P PT SS PL + Q+ G P+ +
Sbjct: 1324 PMQFQSQSTVS-------SLQNP-------GPTQSESSQTPLFHSSPQIQLVQGSPSSQE 1369
Query: 291 AAASGIMGRSALPRPSLAINGSNLPRSKIAQP------VRSFLQPPKPLSSL 336
+ + +++ +IN ++ +S + P ++ P+P ++L
Sbjct: 1370 QQVTLFLSPASMSALQTSINQQDMQQSPLYSPQNNMPGIQGATSSPQPQATL 1421
>gi|164419746 nuclear factor of activated T-cells 5 isoform d [Homo
sapiens]
Length = 1548
Score = 34.7 bits (78), Expect = 0.13
Identities = 71/352 (20%), Positives = 123/352 (34%), Gaps = 64/352 (18%)
Query: 24 SPQSSIDSELSTSELEDDSISMGYKLQDLTDVQIMARLQEESLRQDYASTSASVSRH--- 80
SP + S+ ST+ E M + + A LQ S+ QD ST+ +S+
Sbjct: 1112 SPNPIVHSQTSTTSSEQMQPPMFHSQSTI------AVLQGSSVPQDQQSTNIFLSQSPMN 1165
Query: 81 -------------SSSVSLSSGKKGTCSDQEYDQYSLEDEEEFDHLPPPQPRLPRCSPFQ 127
++ S+S + + S+Q Q + + + H+ P + P Q
Sbjct: 1166 NLQTNTVAQEAFFAAPNSISPLQSTSNSEQ---QAAFQQQAPISHIQTPMLSQEQAQPPQ 1222
Query: 128 RGIPHSQTFSSIRECRRSPSSQY----------------FPSNNYQQQQYYSPQAQTPDQ 171
+G+ Q P SQ PS QQQQ Q Q Q
Sbjct: 1223 QGLFQPQVALGSLPPNPMPQSQQGTMFQSQHSIVAMQSNSPSQEQQQQQQQQQQQQQQQQ 1282
Query: 172 QPNRTNGDKLRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGISRIQSCI 231
Q + +M + + P + N +P+ + Q+ S H N Q
Sbjct: 1283 QSILFSNQNTMATMASPKQPPPNMIFNPN-QNPMANQEQQN-QSIFHQQSNMAPMNQEQQ 1340
Query: 232 PSPGQLQHRVHSVGHFPVSIRQPLKATAYVSPTVQGSSNMPL-SNGLQLYSNTGIPTPNK 290
P Q Q V S++ P PT SS PL + Q+ G P+ +
Sbjct: 1341 PMQFQSQSTVS-------SLQNP-------GPTQSESSQTPLFHSSPQIQLVQGSPSSQE 1386
Query: 291 AAASGIMGRSALPRPSLAINGSNLPRSKIAQP------VRSFLQPPKPLSSL 336
+ + +++ +IN ++ +S + P ++ P+P ++L
Sbjct: 1387 QQVTLFLSPASMSALQTSINQQDMQQSPLYSPQNNMPGIQGATSSPQPQATL 1438
>gi|164419744 nuclear factor of activated T-cells 5 isoform b [Homo
sapiens]
Length = 1549
Score = 34.7 bits (78), Expect = 0.13
Identities = 71/352 (20%), Positives = 123/352 (34%), Gaps = 64/352 (18%)
Query: 24 SPQSSIDSELSTSELEDDSISMGYKLQDLTDVQIMARLQEESLRQDYASTSASVSRH--- 80
SP + S+ ST+ E M + + A LQ S+ QD ST+ +S+
Sbjct: 1113 SPNPIVHSQTSTTSSEQMQPPMFHSQSTI------AVLQGSSVPQDQQSTNIFLSQSPMN 1166
Query: 81 -------------SSSVSLSSGKKGTCSDQEYDQYSLEDEEEFDHLPPPQPRLPRCSPFQ 127
++ S+S + + S+Q Q + + + H+ P + P Q
Sbjct: 1167 NLQTNTVAQEAFFAAPNSISPLQSTSNSEQ---QAAFQQQAPISHIQTPMLSQEQAQPPQ 1223
Query: 128 RGIPHSQTFSSIRECRRSPSSQY----------------FPSNNYQQQQYYSPQAQTPDQ 171
+G+ Q P SQ PS QQQQ Q Q Q
Sbjct: 1224 QGLFQPQVALGSLPPNPMPQSQQGTMFQSQHSIVAMQSNSPSQEQQQQQQQQQQQQQQQQ 1283
Query: 172 QPNRTNGDKLRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGISRIQSCI 231
Q + +M + + P + N +P+ + Q+ S H N Q
Sbjct: 1284 QSILFSNQNTMATMASPKQPPPNMIFNPN-QNPMANQEQQN-QSIFHQQSNMAPMNQEQQ 1341
Query: 232 PSPGQLQHRVHSVGHFPVSIRQPLKATAYVSPTVQGSSNMPL-SNGLQLYSNTGIPTPNK 290
P Q Q V S++ P PT SS PL + Q+ G P+ +
Sbjct: 1342 PMQFQSQSTVS-------SLQNP-------GPTQSESSQTPLFHSSPQIQLVQGSPSSQE 1387
Query: 291 AAASGIMGRSALPRPSLAINGSNLPRSKIAQP------VRSFLQPPKPLSSL 336
+ + +++ +IN ++ +S + P ++ P+P ++L
Sbjct: 1388 QQVTLFLSPASMSALQTSINQQDMQQSPLYSPQNNMPGIQGATSSPQPQATL 1439
>gi|27886524 nuclear factor of activated T-cells 5 isoform a [Homo
sapiens]
Length = 1455
Score = 34.7 bits (78), Expect = 0.13
Identities = 71/352 (20%), Positives = 123/352 (34%), Gaps = 64/352 (18%)
Query: 24 SPQSSIDSELSTSELEDDSISMGYKLQDLTDVQIMARLQEESLRQDYASTSASVSRH--- 80
SP + S+ ST+ E M + + A LQ S+ QD ST+ +S+
Sbjct: 1019 SPNPIVHSQTSTTSSEQMQPPMFHSQSTI------AVLQGSSVPQDQQSTNIFLSQSPMN 1072
Query: 81 -------------SSSVSLSSGKKGTCSDQEYDQYSLEDEEEFDHLPPPQPRLPRCSPFQ 127
++ S+S + + S+Q Q + + + H+ P + P Q
Sbjct: 1073 NLQTNTVAQEAFFAAPNSISPLQSTSNSEQ---QAAFQQQAPISHIQTPMLSQEQAQPPQ 1129
Query: 128 RGIPHSQTFSSIRECRRSPSSQY----------------FPSNNYQQQQYYSPQAQTPDQ 171
+G+ Q P SQ PS QQQQ Q Q Q
Sbjct: 1130 QGLFQPQVALGSLPPNPMPQSQQGTMFQSQHSIVAMQSNSPSQEQQQQQQQQQQQQQQQQ 1189
Query: 172 QPNRTNGDKLRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGISRIQSCI 231
Q + +M + + P + N +P+ + Q+ S H N Q
Sbjct: 1190 QSILFSNQNTMATMASPKQPPPNMIFNPN-QNPMANQEQQN-QSIFHQQSNMAPMNQEQQ 1247
Query: 232 PSPGQLQHRVHSVGHFPVSIRQPLKATAYVSPTVQGSSNMPL-SNGLQLYSNTGIPTPNK 290
P Q Q V S++ P PT SS PL + Q+ G P+ +
Sbjct: 1248 PMQFQSQSTVS-------SLQNP-------GPTQSESSQTPLFHSSPQIQLVQGSPSSQE 1293
Query: 291 AAASGIMGRSALPRPSLAINGSNLPRSKIAQP------VRSFLQPPKPLSSL 336
+ + +++ +IN ++ +S + P ++ P+P ++L
Sbjct: 1294 QQVTLFLSPASMSALQTSINQQDMQQSPLYSPQNNMPGIQGATSSPQPQATL 1345
>gi|154759293 cysteine-rich hydrophobic domain 1 [Homo sapiens]
Length = 224
Score = 34.7 bits (78), Expect = 0.13
Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 45 MGYKLQDLTDVQIMARLQEESLRQDYASTSASVSRHSSSVS-LSSGKKGTCSDQEYDQYS 103
M L ++ + ++ L+EE ++ A+TS+S SSSVS ++ ++E ++
Sbjct: 1 MSILLPNMAEFDTISELEEEE--EEEAATSSSSPSSSSSVSGPDDDEEDEEEEEEEEEEE 58
Query: 104 LEDEEEFDHLPPPQPRL 120
E+EEE + PP PR+
Sbjct: 59 EEEEEEEEEEAPPPPRV 75
>gi|16975496 cortactin binding protein 2 [Homo sapiens]
Length = 1663
Score = 34.7 bits (78), Expect = 0.13
Identities = 56/212 (26%), Positives = 71/212 (33%), Gaps = 53/212 (25%)
Query: 162 YSPQAQTPDQQPNRTNGDKLRRSMPN---------LARMPSTTAISSNISSPVTVRNSQS 212
+ A PDQ N T R P LAR T A+S +SP S+
Sbjct: 452 FQGNANDPDQNGNTTQSPPSRDVSPTSRDNLVAKQLARNTVTQALS-RFTSPQAGAPSRP 510
Query: 213 FDSSLHGAGNGISRIQSCIPSPGQLQHRVHSVGHFPVSIRQPLKATAYVSPTVQGSSNMP 272
G P G+ + H V P + P G S P
Sbjct: 511 GVPPTGDVGTH--------PPVGRTSLKTHGVARVDRGNPPP------IPPKKPGLSQTP 556
Query: 273 LSNGLQLY--------SNTGIPTPNKAAASGIMGRSALPRPSLAINGSNLPRSKIAQPVR 324
QL SNTG NK AS S+LP+ + IN NLP+S Q
Sbjct: 557 SPPHPQLKVIIDSSRASNTGAKVDNKTVAST---PSSLPQGNRVINEENLPKSSSPQ--- 610
Query: 325 SFLQPPKP------------LSSLSTLRDGNW 344
PPKP +S+L+T + G W
Sbjct: 611 ---LPPKPSIDLTVAPAGCAVSALATSQVGAW 639
>gi|223941891 protein tyrosine phosphatase, non-receptor type 3
isoform 6 [Homo sapiens]
Length = 581
Score = 34.3 bits (77), Expect = 0.17
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 24/91 (26%)
Query: 16 YTSRGSPLSPQSSIDSELSTSELEDDSISMGYKLQDLTDVQIMARLQEESLRQDYASTSA 75
YT +GS L+PQ S DSE+S + +ESL ++ + S
Sbjct: 82 YTYKGS-LAPQDS-DSEVSQNRSP----------------------HQESLSENNPAQSY 117
Query: 76 SVSRHSSSVSLSSGKKGTCSDQEYDQYSLED 106
+ SSSVS SS G+CS DQ L+D
Sbjct: 118 LTQKSSSSVSPSSNAPGSCSPDGVDQQLLDD 148
>gi|223941888 protein tyrosine phosphatase, non-receptor type 3
isoform 5 [Homo sapiens]
Length = 626
Score = 34.3 bits (77), Expect = 0.17
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 24/91 (26%)
Query: 16 YTSRGSPLSPQSSIDSELSTSELEDDSISMGYKLQDLTDVQIMARLQEESLRQDYASTSA 75
YT +GS L+PQ S DSE+S + +ESL ++ + S
Sbjct: 127 YTYKGS-LAPQDS-DSEVSQNRSP----------------------HQESLSENNPAQSY 162
Query: 76 SVSRHSSSVSLSSGKKGTCSDQEYDQYSLED 106
+ SSSVS SS G+CS DQ L+D
Sbjct: 163 LTQKSSSSVSPSSNAPGSCSPDGVDQQLLDD 193
>gi|223941885 protein tyrosine phosphatase, non-receptor type 3
isoform 4 [Homo sapiens]
Length = 737
Score = 34.3 bits (77), Expect = 0.17
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 24/91 (26%)
Query: 16 YTSRGSPLSPQSSIDSELSTSELEDDSISMGYKLQDLTDVQIMARLQEESLRQDYASTSA 75
YT +GS L+PQ S DSE+S + +ESL ++ + S
Sbjct: 238 YTYKGS-LAPQDS-DSEVSQNRSP----------------------HQESLSENNPAQSY 273
Query: 76 SVSRHSSSVSLSSGKKGTCSDQEYDQYSLED 106
+ SSSVS SS G+CS DQ L+D
Sbjct: 274 LTQKSSSSVSPSSNAPGSCSPDGVDQQLLDD 304
>gi|223941882 protein tyrosine phosphatase, non-receptor type 3
isoform 3 [Homo sapiens]
Length = 782
Score = 34.3 bits (77), Expect = 0.17
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 24/91 (26%)
Query: 16 YTSRGSPLSPQSSIDSELSTSELEDDSISMGYKLQDLTDVQIMARLQEESLRQDYASTSA 75
YT +GS L+PQ S DSE+S + +ESL ++ + S
Sbjct: 283 YTYKGS-LAPQDS-DSEVSQNRSP----------------------HQESLSENNPAQSY 318
Query: 76 SVSRHSSSVSLSSGKKGTCSDQEYDQYSLED 106
+ SSSVS SS G+CS DQ L+D
Sbjct: 319 LTQKSSSSVSPSSNAPGSCSPDGVDQQLLDD 349
>gi|223941879 protein tyrosine phosphatase, non-receptor type 3
isoform 2 [Homo sapiens]
Length = 868
Score = 34.3 bits (77), Expect = 0.17
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 24/91 (26%)
Query: 16 YTSRGSPLSPQSSIDSELSTSELEDDSISMGYKLQDLTDVQIMARLQEESLRQDYASTSA 75
YT +GS L+PQ S DSE+S + +ESL ++ + S
Sbjct: 369 YTYKGS-LAPQDS-DSEVSQNRSP----------------------HQESLSENNPAQSY 404
Query: 76 SVSRHSSSVSLSSGKKGTCSDQEYDQYSLED 106
+ SSSVS SS G+CS DQ L+D
Sbjct: 405 LTQKSSSSVSPSSNAPGSCSPDGVDQQLLDD 435
>gi|223941876 protein tyrosine phosphatase, non-receptor type 3
isoform 1 [Homo sapiens]
Length = 913
Score = 34.3 bits (77), Expect = 0.17
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 24/91 (26%)
Query: 16 YTSRGSPLSPQSSIDSELSTSELEDDSISMGYKLQDLTDVQIMARLQEESLRQDYASTSA 75
YT +GS L+PQ S DSE+S + +ESL ++ + S
Sbjct: 414 YTYKGS-LAPQDS-DSEVSQNRSP----------------------HQESLSENNPAQSY 449
Query: 76 SVSRHSSSVSLSSGKKGTCSDQEYDQYSLED 106
+ SSSVS SS G+CS DQ L+D
Sbjct: 450 LTQKSSSSVSPSSNAPGSCSPDGVDQQLLDD 480
>gi|183396804 Regulation of nuclear pre-mRNA domain containing 2
[Homo sapiens]
Length = 1461
Score = 34.3 bits (77), Expect = 0.17
Identities = 49/166 (29%), Positives = 65/166 (39%), Gaps = 24/166 (14%)
Query: 184 SMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLH---GAGNGISRIQSCIPSPGQLQHR 240
++PNLA + ISS +SS +V + + G S + S + +P
Sbjct: 444 ALPNLANV-DLAKISSILSSLTSVMKNTGVSPASRPSPGTPTSPSNLTSGLKTPAPATTT 502
Query: 241 VHS--------VGHFPVSIRQPLKATAYVS-PTVQGSSNMPLSNGLQLYSNTGIPTPNKA 291
H+ V P SI L T S P +QG S++ L S TG P P
Sbjct: 503 SHNPLANILSKVEITPESILSALSKTQTQSAPALQGLSSL-------LQSVTGNPVPASE 555
Query: 292 AASGIMGRSALPRPSLAINGSNLPRSKIAQPV--RSFLQPPKPLSS 335
AAS S I G NLP S AQP +SF P +S
Sbjct: 556 AASQSTSASPANTTVSTIKGRNLPSS--AQPFIPKSFNYSPNSSTS 599
>gi|8923735 family with sequence similarity 48, member A isoform b
[Homo sapiens]
Length = 733
Score = 34.3 bits (77), Expect = 0.17
Identities = 61/244 (25%), Positives = 94/244 (38%), Gaps = 25/244 (10%)
Query: 16 YTSRGSPLSPQSSIDSELSTSELEDDSISMGYKLQDLTDVQIMARLQEESLRQDYASTSA 75
Y + P DS++S S D S + + TD + + Q + L Q+ A
Sbjct: 364 YYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVN-QYQELVQNEAKCPV 422
Query: 76 SVSRHSS-SVSLSSGKKGTCSDQEYDQYSLEDE---EEFDHLPPPQPRLPRCSPFQRG-- 129
+S SS S SLS G +DQ + S++ + H PPP +LP S
Sbjct: 423 KMSHSSSGSASLSQVSPGKETDQT-ETVSVQSSVLGKGVKHRPPP-IKLPSSSGNSSSGN 480
Query: 130 -IPHSQTFSSIRECRRSPSSQYFPSN-------NYQQQQYYSPQAQTPDQQPNRTNGDKL 181
QT S ++ PSS+ PS+ + Q SP A +P RT ++
Sbjct: 481 YFTPQQTSSFLKSPTPPPSSK--PSSIPRKSSVDLNQVSMLSPAALSPASSSQRTTATQV 538
Query: 182 RRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGA--GNGISRIQSCIPSPGQLQH 239
M N A + + S + + S GA GI+ + +PS G L +
Sbjct: 539 ---MANSAGLNFINVVGSVCGAQALMSGSNPMLGCNTGAITPAGIN-LSGLLPSGGLLPN 594
Query: 240 RVHS 243
+ S
Sbjct: 595 ALPS 598
>gi|98961135 family with sequence similarity 48, member A isoform a
[Homo sapiens]
Length = 779
Score = 34.3 bits (77), Expect = 0.17
Identities = 61/244 (25%), Positives = 94/244 (38%), Gaps = 25/244 (10%)
Query: 16 YTSRGSPLSPQSSIDSELSTSELEDDSISMGYKLQDLTDVQIMARLQEESLRQDYASTSA 75
Y + P DS++S S D S + + TD + + Q + L Q+ A
Sbjct: 363 YYGKIQPCKADEESDSQMSPSHSSTDDHSNWFIIGSKTDAERVVN-QYQELVQNEAKCPV 421
Query: 76 SVSRHSS-SVSLSSGKKGTCSDQEYDQYSLEDE---EEFDHLPPPQPRLPRCSPFQRG-- 129
+S SS S SLS G +DQ + S++ + H PPP +LP S
Sbjct: 422 KMSHSSSGSASLSQVSPGKETDQT-ETVSVQSSVLGKGVKHRPPP-IKLPSSSGNSSSGN 479
Query: 130 -IPHSQTFSSIRECRRSPSSQYFPSN-------NYQQQQYYSPQAQTPDQQPNRTNGDKL 181
QT S ++ PSS+ PS+ + Q SP A +P RT ++
Sbjct: 480 YFTPQQTSSFLKSPTPPPSSK--PSSIPRKSSVDLNQVSMLSPAALSPASSSQRTTATQV 537
Query: 182 RRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGA--GNGISRIQSCIPSPGQLQH 239
M N A + + S + + S GA GI+ + +PS G L +
Sbjct: 538 ---MANSAGLNFINVVGSVCGAQALMSGSNPMLGCNTGAITPAGIN-LSGLLPSGGLLPN 593
Query: 240 RVHS 243
+ S
Sbjct: 594 ALPS 597
>gi|116805348 trinucleotide repeat containing 6A [Homo sapiens]
Length = 1962
Score = 33.9 bits (76), Expect = 0.22
Identities = 42/167 (25%), Positives = 64/167 (38%), Gaps = 31/167 (18%)
Query: 117 QPRLPRCSPFQRGIPHSQTFSSIRECRRSPSSQYFPSNNYQQQQYYSPQAQTPDQQPNRT 176
+P + + P S S+ +R+ ++ P QQQQ PQ Q P QQP
Sbjct: 60 KPSVSQPQPANSNNGTSTATSTNNNAKRATANNQQPQQQQQQQQ---PQQQQPQQQPQPQ 116
Query: 177 NGDKLRRSMPN-LARMPSTT--------------------AISSNISSPVTVRNSQSFDS 215
+ + P L R P I++N+ S V V NSQS S
Sbjct: 117 PQQQQPQQQPQALPRYPREVPPRFRHQEHKQLLKRGQHFPVIAANLGSAVKVLNSQSESS 176
Query: 216 SL---HGAGNGISRIQSCIPSPGQLQHRVHSVGHFPVSIRQPLKATA 259
+L NG +Q+ + + H S H+ S R P+ +T+
Sbjct: 177 ALTNQQPQNNG--EVQNS-KNQSDINHST-SGSHYENSQRGPVSSTS 219
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 33.9 bits (76), Expect = 0.22
Identities = 66/265 (24%), Positives = 96/265 (36%), Gaps = 35/265 (13%)
Query: 97 QEYDQYSLEDEEEFDHLPPPQPRLPRCSPFQRGI---PHSQTFSSIRECRRSPS---SQY 150
Q+ YS + + H P + P+ P Q P+SQ S ++SP+ SQ
Sbjct: 480 QQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPH-QQSPAPYPSQQ 538
Query: 151 FPSNNYQQQQ--YYSPQAQTP--DQQPNRTNGDKLRRSM---PNLARMPSTTAISSNISS 203
+ + Q Q Y PQAQ+P QQP + L + ++ TA S
Sbjct: 539 STTQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFP 598
Query: 204 PVTVRNSQSFDSSLHGAGNGISRIQSCIPSPGQLQHRVHSVGHFPVSIRQ-PLKATAYVS 262
P + SF S A + S LQ R S+ SI P+ +S
Sbjct: 599 PPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALS 658
Query: 263 PTV--------QGSSNMPLSNGLQLYSNTGIPTPNKAAASGIMGRSALP--RPSLAINGS 312
P V QG + P + +++ +P GI G S P P+
Sbjct: 659 PGVSTSGISSSQGEQSNPAQSPFSPHTSPHLP--------GIRGPSPSPVGSPASVAQSR 710
Query: 313 NLPRSKIAQPVRSFLQPPKPLSSLS 337
+ P S A P PP+P S S
Sbjct: 711 SGPLSPAAVPGNQ--MPPRPPSGQS 733
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 33.9 bits (76), Expect = 0.22
Identities = 66/265 (24%), Positives = 96/265 (36%), Gaps = 35/265 (13%)
Query: 97 QEYDQYSLEDEEEFDHLPPPQPRLPRCSPFQRGI---PHSQTFSSIRECRRSPS---SQY 150
Q+ YS + + H P + P+ P Q P+SQ S ++SP+ SQ
Sbjct: 480 QQQPPYSQQPPSQTPHAQPSYQQQPQSQPPQLQSSQPPYSQQPSQPPH-QQSPAPYPSQQ 538
Query: 151 FPSNNYQQQQ--YYSPQAQTP--DQQPNRTNGDKLRRSM---PNLARMPSTTAISSNISS 203
+ + Q Q Y PQAQ+P QQP + L + ++ TA S
Sbjct: 539 STTQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFP 598
Query: 204 PVTVRNSQSFDSSLHGAGNGISRIQSCIPSPGQLQHRVHSVGHFPVSIRQ-PLKATAYVS 262
P + SF S A + S LQ R S+ SI P+ +S
Sbjct: 599 PPQELSQDSFGSQASSAPSMTSSKGGQEDMNLSLQSRPSSLPDLSGSIDDLPMGTEGALS 658
Query: 263 PTV--------QGSSNMPLSNGLQLYSNTGIPTPNKAAASGIMGRSALP--RPSLAINGS 312
P V QG + P + +++ +P GI G S P P+
Sbjct: 659 PGVSTSGISSSQGEQSNPAQSPFSPHTSPHLP--------GIRGPSPSPVGSPASVAQSR 710
Query: 313 NLPRSKIAQPVRSFLQPPKPLSSLS 337
+ P S A P PP+P S S
Sbjct: 711 SGPLSPAAVPGNQ--MPPRPPSGQS 733
Score = 29.6 bits (65), Expect = 4.2
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 114 PPPQPRLPRCSPFQRGIPHSQTFSSIRECRRSPSSQYFPSNN---YQQQQYYSPQAQTPD 170
PP Q + + QR + FS+ + +PS FPS YQQQQ S A P
Sbjct: 1325 PPQQQQQQQ----QRHDSYGNQFST----QGTPSGSPFPSQQTTMYQQQQQVSSPAPLPR 1376
Query: 171 QQPNRTNGDK 180
NRT+ K
Sbjct: 1377 PMENRTSPSK 1386
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 33.9 bits (76), Expect = 0.22
Identities = 44/171 (25%), Positives = 69/171 (40%), Gaps = 11/171 (6%)
Query: 71 ASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSLEDEEEFDHLPPPQPRLPRCSPFQRGI 130
+S+S+S S SSS S SS + SD E ++ E +P P P P+ + G
Sbjct: 2537 SSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTP-APK-EAVREGR 2594
Query: 131 PHSQTFSSIRECRRSPSSQYFPSNNYQQQQYYSPQAQTPDQQPNRTNGDKLRRSMPNLAR 190
P T + R+ R S SS S++ S + + + ++ S P+ A+
Sbjct: 2595 PPEPT-PAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAK 2653
Query: 191 MPSTTAI---SSNISSPVTVRNSQS----FDSSLHGAGNGISRIQSCIPSP 234
P A+ +S P R S+S DS S ++ PSP
Sbjct: 2654 -PGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSP 2703
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.126 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,122,961
Number of Sequences: 37866
Number of extensions: 764701
Number of successful extensions: 2885
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 136
Number of HSP's that attempted gapping in prelim test: 2736
Number of HSP's gapped (non-prelim): 257
length of query: 349
length of database: 18,247,518
effective HSP length: 103
effective length of query: 246
effective length of database: 14,347,320
effective search space: 3529440720
effective search space used: 3529440720
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.