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Search of human proteins with 92859641
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|92859641 thymidine kinase 2, mitochondrial [Homo sapiens]
(307 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|92859641 thymidine kinase 2, mitochondrial [Homo sapiens] 637 0.0
gi|4503269 deoxycytidine kinase [Homo sapiens] 137 9e-33
gi|18426967 deoxyguanosine kinase isoform a precursor [Homo sapi... 120 1e-27
gi|18426971 deoxyguanosine kinase isoform b precursor [Homo sapi... 52 5e-07
gi|117606370 UMP-CMP kinase 2 [Homo sapiens] 38 0.013
gi|239749498 PREDICTED: hypothetical protein [Homo sapiens] 37 0.017
gi|239743634 PREDICTED: hypothetical protein XP_002342919 [Homo ... 37 0.017
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 35 0.084
gi|169212744 PREDICTED: hypothetical protein [Homo sapiens] 35 0.084
gi|239757097 PREDICTED: hypothetical protein [Homo sapiens] 33 0.41
gi|239751603 PREDICTED: hypothetical protein XP_002347927 [Homo ... 33 0.41
gi|239746120 PREDICTED: hypothetical protein XP_002344194 [Homo ... 33 0.41
gi|111955162 5-azacytidine induced 1 isoform b [Homo sapiens] 33 0.41
gi|111955084 5-azacytidine induced 1 isoform a [Homo sapiens] 33 0.41
gi|22094125 zinc finger protein 28 [Homo sapiens] 32 0.92
gi|239753738 PREDICTED: hypothetical protein [Homo sapiens] 31 1.6
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 30 2.1
gi|222080060 Smith-Magenis syndrome chromosome region, candidate... 30 2.7
gi|31652259 melanoma ubiquitous mutated protein [Homo sapiens] 30 2.7
gi|17738294 cyclin-dependent kinase inhibitor 2A isoform 4 [Homo... 30 3.5
gi|110832843 TBP-associated factor 4 [Homo sapiens] 30 3.5
gi|46391104 hypothetical protein LOC83541 [Homo sapiens] 30 3.5
gi|108389127 hypothetical protein LOC83541 [Homo sapiens] 30 3.5
gi|13937401 hypothetical protein LOC83541 [Homo sapiens] 30 3.5
gi|149274655 synapse defective 1, Rho GTPase, homolog 2 [Homo sa... 30 3.5
gi|239047271 autophagy related 2A [Homo sapiens] 29 4.6
gi|190570174 cytochrome P450, family 21, subfamily A, polypeptid... 29 4.6
gi|14550409 cytochrome P450, family 21, subfamily A, polypeptide... 29 4.6
gi|58294158 breast carcinoma amplified sequence 4 isoform c [Hom... 29 4.6
gi|239756517 PREDICTED: hypothetical protein [Homo sapiens] 29 4.6
>gi|92859641 thymidine kinase 2, mitochondrial [Homo sapiens]
Length = 307
Score = 637 bits (1643), Expect = 0.0
Identities = 307/307 (100%), Positives = 307/307 (100%)
Query: 1 MRPGLFKGQAPGSRRRPTAGLAVVRADSHKKEPRASGSARPAMLLWPLRGWAARALRCFG 60
MRPGLFKGQAPGSRRRPTAGLAVVRADSHKKEPRASGSARPAMLLWPLRGWAARALRCFG
Sbjct: 1 MRPGLFKGQAPGSRRRPTAGLAVVRADSHKKEPRASGSARPAMLLWPLRGWAARALRCFG 60
Query: 61 PGSRGSPASGPGPRRVQRRAWPPDKEQEKEKKSVICVEGNIASGKTTCLEFFSNATDVEV 120
PGSRGSPASGPGPRRVQRRAWPPDKEQEKEKKSVICVEGNIASGKTTCLEFFSNATDVEV
Sbjct: 61 PGSRGSPASGPGPRRVQRRAWPPDKEQEKEKKSVICVEGNIASGKTTCLEFFSNATDVEV 120
Query: 121 LTEPVSKWRNVRGHNPLGLMYHDASRWGLTLQTYVQLTMLDRHTRPQVSSVRLMERSIHS 180
LTEPVSKWRNVRGHNPLGLMYHDASRWGLTLQTYVQLTMLDRHTRPQVSSVRLMERSIHS
Sbjct: 121 LTEPVSKWRNVRGHNPLGLMYHDASRWGLTLQTYVQLTMLDRHTRPQVSSVRLMERSIHS 180
Query: 181 ARYIFVENLYRSGKMPEVDYVVLSEWFDWILRNMDVSVDLIVYLRTNPETCYQRLKKRCR 240
ARYIFVENLYRSGKMPEVDYVVLSEWFDWILRNMDVSVDLIVYLRTNPETCYQRLKKRCR
Sbjct: 181 ARYIFVENLYRSGKMPEVDYVVLSEWFDWILRNMDVSVDLIVYLRTNPETCYQRLKKRCR 240
Query: 241 EEEKVIPLEYLEAIHHLHEEWLIKGSLFPMAAPVLVIEADHHMERMLELFEQNRDRILTP 300
EEEKVIPLEYLEAIHHLHEEWLIKGSLFPMAAPVLVIEADHHMERMLELFEQNRDRILTP
Sbjct: 241 EEEKVIPLEYLEAIHHLHEEWLIKGSLFPMAAPVLVIEADHHMERMLELFEQNRDRILTP 300
Query: 301 ENRKHCP 307
ENRKHCP
Sbjct: 301 ENRKHCP 307
>gi|4503269 deoxycytidine kinase [Homo sapiens]
Length = 260
Score = 137 bits (346), Expect = 9e-33
Identities = 80/224 (35%), Positives = 114/224 (50%), Gaps = 30/224 (13%)
Query: 95 ICVEGNIASGKTTCLEFFSN-ATDVEVLTEPVSKWRNVR---------------GHNPLG 138
I +EGNIA+GK+T + D EV+ EPV++W NV+ G N L
Sbjct: 24 ISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQ 83
Query: 139 LMYHDASRWGLTLQTYV-------QLTMLDRHTRPQVSSVRLMERSIHSARYIFVENLYR 191
+MY RW T QTY QL L+ + V ERS++S RYIF NLY
Sbjct: 84 MMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYE 143
Query: 192 SGKMPEVDYVVLSEWFDWILRNMDVSVDL--IVYLRTNPETCYQRLKKRCREEEKVIPLE 249
S M E ++ + +W DW+ S++L I+YL+ PETC R+ R R EE+ IPLE
Sbjct: 144 SECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLE 203
Query: 250 YLEAIHHLHEEWLIKGSL-----FPMAAPVLVIEADHHMERMLE 288
YLE +H+ HE WL+ +L + P+L ++ + + E
Sbjct: 204 YLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYE 247
>gi|18426967 deoxyguanosine kinase isoform a precursor [Homo
sapiens]
Length = 277
Score = 120 bits (302), Expect = 1e-27
Identities = 70/213 (32%), Positives = 114/213 (53%), Gaps = 27/213 (12%)
Query: 95 ICVEGNIASGKTTCLEFFSNA-TDVEVLTEPVSKWRNVRGH------------NPLGLMY 141
+ +EGNIA GK+T ++ + + V TEPV+ W+N++ N L +MY
Sbjct: 41 LSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGTQKACTAQSLGNLLDMMY 100
Query: 142 HDASRWGLTLQTYVQLTMLDRHTRPQVSS-------VRLMERSIHSARYIFVENLYRSGK 194
+ +RW T QT+ L+ L P V++ ERS++S RYIF +NL+ +G
Sbjct: 101 REPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENGS 160
Query: 195 MPEVDYVVLSEWFDWILRNMDVSVDL--IVYLRTNPETCYQRLKKRCREEEKVIPLEYLE 252
+ ++++ + +W ++L + L +YL+ +P+ C +RL +R REEEK I L YLE
Sbjct: 161 LSDIEWHIYQDWHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLE 220
Query: 253 AIHHLHEEWLIKGSL-----FPMAAPVLVIEAD 280
+H HE WLI + M PVLV++ +
Sbjct: 221 QLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVN 253
>gi|18426971 deoxyguanosine kinase isoform b precursor [Homo
sapiens]
Length = 189
Score = 52.4 bits (124), Expect = 5e-07
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 20/111 (18%)
Query: 95 ICVEGNIASGKTTCLEFFSNA-TDVEVLTEPVSKWRNVRGH------------NPLGLMY 141
+ +EGNIA GK+T ++ + + V TEPV+ W+N++ N L +MY
Sbjct: 41 LSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGTQKACTAQSLGNLLDMMY 100
Query: 142 HDASRWGLTLQTYVQLTMLDRHTRP-------QVSSVRLMERSIHSARYIF 185
+ +RW T QT+ L+ L P V++ ERS++S R F
Sbjct: 101 REPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRLHF 151
>gi|117606370 UMP-CMP kinase 2 [Homo sapiens]
Length = 449
Score = 37.7 bits (86), Expect = 0.013
Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 19/165 (11%)
Query: 85 KEQEKEKKSVICVEGNIASGKTTCLEFFSNATDVEVLTEP---VSKWRNVRGHNPLGLMY 141
K+ +K K V+ +EG A+GKTT + +++ +L P + +WR + P +
Sbjct: 245 KQIQKGKFQVVAIEGLDATGKTTVTQSVADSLKAVLLKSPPSCIGQWRKIFDDEPTII-- 302
Query: 142 HDASRWGLTLQTYVQLTMLDRHTRPQVSSVRLMERSIHSARYIFVENLYRSG--KMPEVD 199
R +L Y+ + + + S +++R HS + G +P
Sbjct: 303 ---RRAFYSLGNYIVASEI---AKESAKSPVIVDRYWHSTATYAIATEVSGGLQHLPPAH 356
Query: 200 YVVLSEWFDWILRNMDVSVDLIVYLRTNPETCYQRLKKRCREEEK 244
+ V +W + +L+ DLI+ L +PE QRL+ R E+ +
Sbjct: 357 HPVY-QWPEDLLK-----PDLILLLTVSPEERLQRLQGRGMEKTR 395
>gi|239749498 PREDICTED: hypothetical protein [Homo sapiens]
Length = 692
Score = 37.4 bits (85), Expect = 0.017
Identities = 37/109 (33%), Positives = 45/109 (41%), Gaps = 14/109 (12%)
Query: 8 GQAPGSRRRPTAGLAV-------VRADSHKKEP---RASGSARPAM-LLWPLRGWAARAL 56
G G+R+RP G R KEP RA + P + LL P R W +
Sbjct: 573 GTGTGARKRPEGGRGARYPCGSSSRVAVPSKEPAGPRAQRNLLPLLPLLAPSRWWGGKV- 631
Query: 57 RCFGPGSRGSPASGPGPRRVQRRAWP-PDKEQEKEKKSVICVEGNIASG 104
C S SPASG G +VQR P P +E+K VE SG
Sbjct: 632 -CEVAVSLESPASGEGAEQVQREGQPAPQSPAPQERKQPWRVESLRDSG 679
>gi|239743634 PREDICTED: hypothetical protein XP_002342919 [Homo
sapiens]
Length = 692
Score = 37.4 bits (85), Expect = 0.017
Identities = 37/109 (33%), Positives = 45/109 (41%), Gaps = 14/109 (12%)
Query: 8 GQAPGSRRRPTAGLAV-------VRADSHKKEP---RASGSARPAM-LLWPLRGWAARAL 56
G G+R+RP G R KEP RA + P + LL P R W +
Sbjct: 573 GTGTGARKRPEGGRGARYPCGSSSRVAVPSKEPAGPRAQRNLLPLLPLLAPSRWWGGKV- 631
Query: 57 RCFGPGSRGSPASGPGPRRVQRRAWP-PDKEQEKEKKSVICVEGNIASG 104
C S SPASG G +VQR P P +E+K VE SG
Sbjct: 632 -CEVAVSLESPASGEGAEQVQREGQPAPQSPAPQERKQPWRVESLRDSG 679
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 35.0 bits (79), Expect = 0.084
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 1 MRPGLFKGQAPGSRRRPTAGLAVVRADSHKKEPRASGSARPAMLLWPLRGWAARALRCFG 60
+RPG F P RR +G RA S + ++ + A P R ALR F
Sbjct: 90 LRPGAFVSPGPLGRRASCSG----RAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFS 145
Query: 61 PGSRGSPASGPGPR 74
PG P + PG R
Sbjct: 146 PGPASPPRASPGGR 159
>gi|169212744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 35.0 bits (79), Expect = 0.084
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 1 MRPGLFKGQAPGSRRRPTAGLAVVRADSHKKEPRASGSARPAMLLWPLRGWAARALRCFG 60
+RPG F P RR +G RA S + ++ + A P R ALR F
Sbjct: 90 LRPGAFVSPGPLGRRASCSG----RAGSAGRLRCSAAALSAAQRGGPARAQVPPALRTFS 145
Query: 61 PGSRGSPASGPGPR 74
PG P + PG R
Sbjct: 146 PGPASPPRASPGGR 159
>gi|239757097 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 32.7 bits (73), Expect = 0.41
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 28 SHKKEPRASGSARPAMLLWPLRGWAARALRCFGPGSRG---SPASGPGPRRVQRRAWP 82
+ ++ R GS+R A W + R C G GS G S +SGPGPR + R P
Sbjct: 24 ARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCRARRGP 81
>gi|239751603 PREDICTED: hypothetical protein XP_002347927 [Homo
sapiens]
Length = 160
Score = 32.7 bits (73), Expect = 0.41
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 28 SHKKEPRASGSARPAMLLWPLRGWAARALRCFGPGSRG---SPASGPGPRRVQRRAWP 82
+ ++ R GS+R A W + R C G GS G S +SGPGPR + R P
Sbjct: 24 ARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCRARRGP 81
>gi|239746120 PREDICTED: hypothetical protein XP_002344194 [Homo
sapiens]
Length = 160
Score = 32.7 bits (73), Expect = 0.41
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 28 SHKKEPRASGSARPAMLLWPLRGWAARALRCFGPGSRG---SPASGPGPRRVQRRAWP 82
+ ++ R GS+R A W + R C G GS G S +SGPGPR + R P
Sbjct: 24 ARRRRCRHRGSSRKACPSWHRSRSSRRRRCCSGGGSPGQCRSCSSGPGPRHCRARRGP 81
>gi|111955162 5-azacytidine induced 1 isoform b [Homo sapiens]
Length = 1044
Score = 32.7 bits (73), Expect = 0.41
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 31 KEPRASGSARPAMLLWPLRGWAA-RALRCFGPGSRGSPASGPGPRRVQRRAWPPDKEQEK 89
+E R G +PA L P G A +AL+ G G PA+GPG R + P+ +Q
Sbjct: 366 RETRVPGMRQPAQELSPTPGGTAHQALKANNTGG-GLPAAGPGDRCLPTSDSSPEPQQPP 424
Query: 90 EKKS 93
E ++
Sbjct: 425 EDRT 428
>gi|111955084 5-azacytidine induced 1 isoform a [Homo sapiens]
Length = 1080
Score = 32.7 bits (73), Expect = 0.41
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 31 KEPRASGSARPAMLLWPLRGWAA-RALRCFGPGSRGSPASGPGPRRVQRRAWPPDKEQEK 89
+E R G +PA L P G A +AL+ G G PA+GPG R + P+ +Q
Sbjct: 366 RETRVPGMRQPAQELSPTPGGTAHQALKANNTGG-GLPAAGPGDRCLPTSDSSPEPQQPP 424
Query: 90 EKKS 93
E ++
Sbjct: 425 EDRT 428
>gi|22094125 zinc finger protein 28 [Homo sapiens]
Length = 868
Score = 31.6 bits (70), Expect = 0.92
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 7 KGQAPGSRRRPTAGLAVVRADSHKKEPRASGS---ARPAMLLWPLRGWAARALRCFGPGS 63
+G A S R PT + + + +PRA PA L P RG G
Sbjct: 2 RGAASASVREPTP---LPGRGAPRTKPRAGRGPTVGTPATLALPARGRPRSRNGLASKGQ 58
Query: 64 RGSPASGPGPRRVQRRAWPPDKEQEKEKKSV 94
RG+ +GPG R + R +E+ K+ ++V
Sbjct: 59 RGAAPTGPGHRALPSRDTALPQERNKKLEAV 89
>gi|239753738 PREDICTED: hypothetical protein [Homo sapiens]
Length = 293
Score = 30.8 bits (68), Expect = 1.6
Identities = 30/91 (32%), Positives = 34/91 (37%), Gaps = 11/91 (12%)
Query: 3 PGLFKGQAPGSRRRPTAGLAVVRADSHKKEPRASGSARPA------MLLWPLRGWAARAL 56
P G G R A R H + +A G+ RP LL PL A R
Sbjct: 5 PSPCPGSPGGQHREMRAPRPFRRRAEHPEVCKAGGARRPQPGPYPKRLLCPLGVAAKRGC 64
Query: 57 RCFGPGSRGSPAS-----GPGPRRVQRRAWP 82
FG GSR A+ GPG RV R P
Sbjct: 65 VEFGAGSRSQSAAADRLPGPGYLRVVARKVP 95
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 30.4 bits (67), Expect = 2.1
Identities = 24/78 (30%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 12 GSRRRPTA-GLAVVRADSHKKEPRASGSARPAMLLWP-----LRGWAARALRCFGPGSRG 65
GS RRP G A V+ + P R P LRG + P R
Sbjct: 1746 GSARRPEKRGAASVKTSGSPRSPAGPEKPRGTQKTTPGVPAVLRG--RTVIYVPSPAPRA 1803
Query: 66 SPASGPGPRRVQRRAWPP 83
P PGPR R+ PP
Sbjct: 1804 QPKGTPGPRATPRKVAPP 1821
>gi|222080060 Smith-Magenis syndrome chromosome region, candidate 7
isoform 3 [Homo sapiens]
Length = 205
Score = 30.0 bits (66), Expect = 2.7
Identities = 26/77 (33%), Positives = 30/77 (38%), Gaps = 21/77 (27%)
Query: 3 PGLFKGQAPGSRRRP-TAGLAVVRADSHKKEPRASGSARPAMLLWPLRGWAARALRCFGP 61
PG F GQ G R RP AGL + P LW +R W A R G
Sbjct: 120 PGGF-GQTAGWRHRPGAAGLLSEQV--------------PGTALWGIRAWGAALRRAAGG 164
Query: 62 G-----SRGSPASGPGP 73
G S G+ +G GP
Sbjct: 165 GCGPCASPGATGAGAGP 181
>gi|31652259 melanoma ubiquitous mutated protein [Homo sapiens]
Length = 711
Score = 30.0 bits (66), Expect = 2.7
Identities = 22/59 (37%), Positives = 23/59 (38%), Gaps = 15/59 (25%)
Query: 30 KKEPRASGSARPAMLLWPLRGWAARALRCFGPGSRGSPASGPGPR-----RVQRRAWPP 83
KK PR GS RP A L G+ SP GPGPR R R PP
Sbjct: 301 KKRPRLDGSQRPP----------AVQLEPMAAGAAPSPGPGPGPRESVTPRSTARLGPP 349
>gi|17738294 cyclin-dependent kinase inhibitor 2A isoform 4 [Homo
sapiens]
Length = 173
Score = 29.6 bits (65), Expect = 3.5
Identities = 28/70 (40%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 2 RPGLFKGQAP--GSRRRPTAGLAVVRADSHKKEPRA----SGSARPAMLLWPLRGWAARA 55
RPG GQ P G+ P G A +R H RA G A P RG A RA
Sbjct: 104 RPGHDDGQRPSGGAAAAPRRG-AQLRRPRHSHPTRARRCPGGLPGHAGGAAPGRGAAGRA 162
Query: 56 LRCFGPGSRG 65
RC GP +RG
Sbjct: 163 -RCLGPSARG 171
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 29.6 bits (65), Expect = 3.5
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 32 EPRASGSARPAMLLWPLRGWAARALRCFGPGSRGSPASGPGP 73
EP +G A+PA G AA A R GPG P GPGP
Sbjct: 151 EPAPAGPAKPA-------GPAALAARA-GPGPGPGPGPGPGP 184
>gi|46391104 hypothetical protein LOC83541 [Homo sapiens]
Length = 295
Score = 29.6 bits (65), Expect = 3.5
Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 16/99 (16%)
Query: 11 PGSRRRPTAGLAVVR------------ADSHKKEPRASGSARPAMLLWPLRGWAARALRC 58
PG RRP L ++ A++ + RA G+ RP P + A+R
Sbjct: 94 PGPCRRPQLDLDILSSLIDLCDSPVSPAEASRTPGRAEGAGRPPPATPPRPPPSTSAVRR 153
Query: 59 FG----PGSRGSPASGPGPRRVQRRAWPPDKEQEKEKKS 93
P S P PGP A PP ++ K S
Sbjct: 154 VDVRPLPASPARPCPSPGPAAASSPARPPGLQRSKSDLS 192
>gi|108389127 hypothetical protein LOC83541 [Homo sapiens]
Length = 295
Score = 29.6 bits (65), Expect = 3.5
Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 16/99 (16%)
Query: 11 PGSRRRPTAGLAVVR------------ADSHKKEPRASGSARPAMLLWPLRGWAARALRC 58
PG RRP L ++ A++ + RA G+ RP P + A+R
Sbjct: 94 PGPCRRPQLDLDILSSLIDLCDSPVSPAEASRTPGRAEGAGRPPPATPPRPPPSTSAVRR 153
Query: 59 FG----PGSRGSPASGPGPRRVQRRAWPPDKEQEKEKKS 93
P S P PGP A PP ++ K S
Sbjct: 154 VDVRPLPASPARPCPSPGPAAASSPARPPGLQRSKSDLS 192
>gi|13937401 hypothetical protein LOC83541 [Homo sapiens]
Length = 295
Score = 29.6 bits (65), Expect = 3.5
Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 16/99 (16%)
Query: 11 PGSRRRPTAGLAVVR------------ADSHKKEPRASGSARPAMLLWPLRGWAARALRC 58
PG RRP L ++ A++ + RA G+ RP P + A+R
Sbjct: 94 PGPCRRPQLDLDILSSLIDLCDSPVSPAEASRTPGRAEGAGRPPPATPPRPPPSTSAVRR 153
Query: 59 FG----PGSRGSPASGPGPRRVQRRAWPPDKEQEKEKKS 93
P S P PGP A PP ++ K S
Sbjct: 154 VDVRPLPASPARPCPSPGPAAASSPARPPGLQRSKSDLS 192
>gi|149274655 synapse defective 1, Rho GTPase, homolog 2 [Homo
sapiens]
Length = 1194
Score = 29.6 bits (65), Expect = 3.5
Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 9/164 (5%)
Query: 8 GQAPGSRRRPTAGLAVVRADSHKKEPRASGSARPAMLLWPLRGWAARALRCFGPGSRGSP 67
G + GS R AG +V+R+ ++ S PA+ + L+ W + R G +G
Sbjct: 151 GCSSGSPFRDPAGSSVIRSGKGDRQEGPSFLRPPAVTVKKLQKWMYKG-RLLSLGMKGR- 208
Query: 68 ASGPGPRRVQRRAWPPDKEQEKEKKS-VICVEGNIASGKTTCLEFFSNATDVEVLTEPVS 126
A G P+ +A P+ K +++ V+ V + T + F NA + +
Sbjct: 209 ARGTAPKVTGTQAASPNVGALKVRENRVLSVP---PDQRITLTDLFENAYGSSMKGRELE 265
Query: 127 KWRN---VRGHNPLGLMYHDASRWGLTLQTYVQLTMLDRHTRPQ 167
+ ++ RGH PL + R L T L + + + + Q
Sbjct: 266 ELKDNIEFRGHKPLNSITVSKKRNWLYQSTLRPLNLEEENKKCQ 309
>gi|239047271 autophagy related 2A [Homo sapiens]
Length = 1938
Score = 29.3 bits (64), Expect = 4.6
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 16/73 (21%)
Query: 16 RPTAGLAVVRADSHKKEPRASGSARPAMLLWPLRGWAARALRCFGP-----------GSR 64
RP ++RA +H P R L+W L G R FGP G R
Sbjct: 1398 RPIGSTDLLRAPAHFPVPSTRVVLREVSLVWHLYGG-----RDFGPHPGHRARTGLSGPR 1452
Query: 65 GSPASGPGPRRVQ 77
SP+ GP R Q
Sbjct: 1453 SSPSRCSGPNRPQ 1465
>gi|190570174 cytochrome P450, family 21, subfamily A, polypeptide 2
isoform b [Homo sapiens]
Length = 465
Score = 29.3 bits (64), Expect = 4.6
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 202 VLSEWFDWILRNMDVSVDLIVYLRTNPETCYQRLKKRCREEEKVIPLEYLEAIHHLHEEW 261
VL W W ++ VD+I +LR P +RLK+ + + ++ ++ + H+E
Sbjct: 168 VLKTWSHWSIQ----IVDVIPFLRFFPNPGLRRLKQAIEKRDHIVEMQLRQ-----HKES 218
Query: 262 LIKGSLFPMAAPVLVIEADHHME 284
L+ G M +L A ME
Sbjct: 219 LVAGQWRDMMDYMLQGVAQPSME 241
>gi|14550409 cytochrome P450, family 21, subfamily A, polypeptide 2
isoform a [Homo sapiens]
Length = 495
Score = 29.3 bits (64), Expect = 4.6
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 202 VLSEWFDWILRNMDVSVDLIVYLRTNPETCYQRLKKRCREEEKVIPLEYLEAIHHLHEEW 261
VL W W ++ VD+I +LR P +RLK+ + + ++ ++ + H+E
Sbjct: 198 VLKTWSHWSIQ----IVDVIPFLRFFPNPGLRRLKQAIEKRDHIVEMQLRQ-----HKES 248
Query: 262 LIKGSLFPMAAPVLVIEADHHME 284
L+ G M +L A ME
Sbjct: 249 LVAGQWRDMMDYMLQGVAQPSME 271
>gi|58294158 breast carcinoma amplified sequence 4 isoform c [Homo
sapiens]
Length = 158
Score = 29.3 bits (64), Expect = 4.6
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 2 RPGLFKGQAPGSRRRPT-AGLAVVRADSHKKEPRASGSARPAMLLWPLRGWAAR 54
RPG G PGS R+P L ++ D+ + EP SG+ A+ L P G A+
Sbjct: 10 RPGRNHG-LPGSLRQPDPVALLMLLVDADQPEPMRSGARELALFLTPEPGAEAK 62
>gi|239756517 PREDICTED: hypothetical protein [Homo sapiens]
Length = 316
Score = 29.3 bits (64), Expect = 4.6
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 17 PTAGLAVVRADSHKKEPRASGSARPAMLLWPLRGWAARALRCFGPGSRGSPASGPGPRRV 76
P AG A++RA S G+A P RG A RC G P +G G R
Sbjct: 65 PAAGSAILRAGSRSPRGAGPGAAGPRA---AGRGGAGGGGRCCTRGRGRFPCAGSGGRGA 121
Query: 77 QRR 79
+ R
Sbjct: 122 RSR 124
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,716,973
Number of Sequences: 37866
Number of extensions: 670977
Number of successful extensions: 2558
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 2520
Number of HSP's gapped (non-prelim): 56
length of query: 307
length of database: 18,247,518
effective HSP length: 102
effective length of query: 205
effective length of database: 14,385,186
effective search space: 2948963130
effective search space used: 2948963130
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.