Guide to the Human Genome
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Name: LOC100287408 Sequence: fasta or formatted (160aa) NCBI GI: 239746120
Description:

PREDICTED: hypothetical protein XP_002344194

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         14           2
 C cysteine            6.2         10           2
 D aspartate           0.0          0           0
 E glutamate           2.5          4           2
 F phenylalanine       0.6          1           1
 G glycine            11.2         18           3
 H histidine           2.5          4           1
 I isoleucine          0.0          0           0
 K lysine              2.5          4           1
 L leucine             6.2         10           2
 M methionine          3.8          6           2
 N asparagine          0.0          0           0
 P proline            10.6         17           2
 Q glutamine           2.5          4           1
 R arginine           17.5         28           4
 S serine             13.8         22           3
 T threonine           3.8          6           1
 V valine              3.1          5           1
 W tryptophan          2.5          4           1
 Y tyrosine            1.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344194 
LOC100292573          1.000   PREDICTED: hypothetical protein 
LOC100290137          1.000   PREDICTED: hypothetical protein XP_002347927 
SRRM2                 0.037   splicing coactivator subunit SRm300 
LOC100293776          0.034   PREDICTED: hypothetical protein 
LOC100288658          0.034   PREDICTED: hypothetical protein XP_002342750 
LOC100288658          0.034   PREDICTED: hypothetical protein 
LOC100292568          0.031   PREDICTED: hypothetical protein 
LOC100291146          0.031   PREDICTED: hypothetical protein XP_002346600 
LOC100289534          0.031   PREDICTED: hypothetical protein XP_002342442 
LOC100293408          0.031   PREDICTED: hypothetical protein 
LOC100289362          0.031   PREDICTED: hypothetical protein 
LOC100289362          0.031   PREDICTED: hypothetical protein XP_002343719 
LOC100288243          0.028   PREDICTED: hypothetical protein 
LOC100288243          0.028   PREDICTED: hypothetical protein XP_002342233 
CXorf67               0.028   hypothetical protein LOC340602 
LOC100292493          0.025   PREDICTED: hypothetical protein 
LOC100131244          0.025   PREDICTED: similar to kinase D-interacting substrat...
LOC100291089          0.025   PREDICTED: hypothetical protein XP_002348116 
LOC100131244          0.025   PREDICTED: similar to kinase D-interacting substrat...
LOC100287393          0.025   PREDICTED: hypothetical protein XP_002344228 
LOC100131244          0.025   PREDICTED: similar to kinase D-interacting substrat...
TK2                   0.025   thymidine kinase 2, mitochondrial 
DDN                   0.025   dendrin 
TG                    0.022   thyroglobulin 
LOC729815             0.022   PREDICTED: hypothetical protein 
GABRA4                0.022   gamma-aminobutyric acid A receptor, alpha 4 precurso...
SNRNP27               0.022   small nuclear ribonucleoprotein 27kDa (U4/U6.U5) [Ho...
FRAS1                 0.022   Fraser syndrome 1 
SFRS2B                0.022   splicing factor, arginine/serine-rich 2B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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