Guide to the Human Genome
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Name: SPP1 Sequence: fasta or formatted (287aa) NCBI GI: 91598939
Description:

secreted phosphoprotein 1 isoform c

Referenced in:

Bone and Related Tissues

Other entries for this name:
alt prot [300aa] secreted phosphoprotein 1 isoform b
alt prot [314aa] secreted phosphoprotein 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         13           1
 C cysteine            1.0          3           1
 D aspartate          16.0         46           4
 E glutamate           9.4         27           2
 F phenylalanine       2.8          8           1
 G glycine             2.4          7           1
 H histidine           5.6         16           2
 I isoleucine          3.5         10           1
 K lysine              5.9         17           2
 L leucine             4.9         14           2
 M methionine          1.7          5           1
 N asparagine          3.1          9           1
 P proline             3.8         11           1
 Q glutamine           3.8         11           1
 R arginine            3.5         10           2
 S serine             14.3         41           2
 T threonine           4.9         14           1
 V valine              6.3         18           2
 W tryptophan          0.3          1           1
 Y tyrosine            2.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   secreted phosphoprotein 1 isoform c 
SPP1                  0.975   secreted phosphoprotein 1 isoform a 
SPP1                  0.943   secreted phosphoprotein 1 isoform b 
DSPP                  0.091   dentin sialophosphoprotein preproprotein 
ACRC                  0.046   ACRC protein 
ATAD2                 0.043   ATPase family, AAA domain containing 2 
MYT1L                 0.043   myelin transcription factor 1-like 
DMP1                  0.041   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.041   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
MTERFD2               0.039   MTERF domain containing 2 
NCL                   0.039   nucleolin 
HUWE1                 0.039   HECT, UBA and WWE domain containing 1 
UBTF                  0.039   upstream binding transcription factor, RNA polymera...
UBTF                  0.039   upstream binding transcription factor, RNA polymera...
UBTF                  0.039   upstream binding transcription factor, RNA polymerase...
LEO1                  0.037   Leo1, Paf1/RNA polymerase II complex component, homo...
SETD1B                0.036   SET domain containing 1B 
BAZ2B                 0.034   bromodomain adjacent to zinc finger domain, 2B [Homo...
IWS1                  0.034   IWS1 homolog 
CASQ2                 0.032   cardiac calsequestrin 2 precursor 
LOC646817             0.030   PREDICTED: similar to SET translocation 
LOC646817             0.030   PREDICTED: similar to SET translocation 
LOC646817             0.030   PREDICTED: similar to SET translocation 
HRC                   0.030   histidine rich calcium binding protein precursor [Hom...
MYST4                 0.029   MYST histone acetyltransferase (monocytic leukemia)...
CYLC1                 0.029   cylicin, basic protein of sperm head cytoskeleton 1...
MDN1                  0.029   MDN1, midasin homolog 
FBXW7                 0.027   F-box and WD repeat domain containing 7 isoform 1 [H...
SSRP1                 0.027   structure specific recognition protein 1 
ZBTB7C                0.027   zinc finger and BTB domain containing 7C 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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