Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 91208415
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens]
(139 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens] 283 4e-77
gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens] 283 4e-77
gi|84105335 mesenchyme homeobox 2 [Homo sapiens] 158 2e-39
gi|194363768 homeobox D9 [Homo sapiens] 85 2e-17
gi|7710150 mesenchyme homeobox 1 isoform 2 [Homo sapiens] 85 2e-17
gi|149588930 gastrulation brain homeo box 1 [Homo sapiens] 84 3e-17
gi|45593144 gastrulation brain homeo box 2 [Homo sapiens] 84 3e-17
gi|24497515 homeobox A3 isoform b [Homo sapiens] 83 8e-17
gi|24497513 homeobox A3 isoform a [Homo sapiens] 83 8e-17
gi|13562112 homeobox A3 isoform a [Homo sapiens] 83 8e-17
gi|84570137 homeobox B3 [Homo sapiens] 82 1e-16
gi|24497538 homeobox C4 [Homo sapiens] 82 2e-16
gi|24497540 homeobox C4 [Homo sapiens] 82 2e-16
gi|5031759 homeobox A11 [Homo sapiens] 81 2e-16
gi|24497517 homeobox A5 [Homo sapiens] 81 2e-16
gi|4504465 homeobox B2 [Homo sapiens] 81 2e-16
gi|89257348 homeo box HB9 [Homo sapiens] 81 3e-16
gi|13273315 homeobox B4 [Homo sapiens] 81 3e-16
gi|148613882 homeobox A4 [Homo sapiens] 80 4e-16
gi|23397672 homeobox D4 [Homo sapiens] 80 7e-16
gi|5031761 homeobox A1 isoform a [Homo sapiens] 79 9e-16
gi|19923391 homeobox D3 [Homo sapiens] 79 2e-15
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 78 2e-15
gi|24497533 homeobox C10 [Homo sapiens] 78 2e-15
gi|182765442 homeobox A10 isoform a [Homo sapiens] 78 3e-15
gi|11321638 homeobox C5 [Homo sapiens] 78 3e-15
gi|85068580 homeobox B7 [Homo sapiens] 77 5e-15
gi|33457326 GS homeobox 1 [Homo sapiens] 77 5e-15
gi|15029506 homeobox D8 [Homo sapiens] 77 6e-15
gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens] 76 8e-15
>gi|91208415 mesenchyme homeobox 1 isoform 3 [Homo sapiens]
Length = 139
Score = 283 bits (723), Expect = 4e-77
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MGTSSLGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSDNQENRGKPEGSSKARKER 60
MGTSSLGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSDNQENRGKPEGSSKARKER
Sbjct: 1 MGTSSLGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSDNQENRGKPEGSSKARKER 60
Query: 61 TAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPI 120
TAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPI
Sbjct: 61 TAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPI 120
Query: 121 SPNGQDPEDGDSTASPSSE 139
SPNGQDPEDGDSTASPSSE
Sbjct: 121 SPNGQDPEDGDSTASPSSE 139
>gi|4758710 mesenchyme homeobox 1 isoform 1 [Homo sapiens]
Length = 254
Score = 283 bits (723), Expect = 4e-77
Identities = 139/139 (100%), Positives = 139/139 (100%)
Query: 1 MGTSSLGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSDNQENRGKPEGSSKARKER 60
MGTSSLGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSDNQENRGKPEGSSKARKER
Sbjct: 116 MGTSSLGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSDNQENRGKPEGSSKARKER 175
Query: 61 TAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPI 120
TAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPI
Sbjct: 176 TAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPI 235
Query: 121 SPNGQDPEDGDSTASPSSE 139
SPNGQDPEDGDSTASPSSE
Sbjct: 236 SPNGQDPEDGDSTASPSSE 254
>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
Length = 304
Score = 158 bits (399), Expect = 2e-39
Identities = 86/120 (71%), Positives = 95/120 (79%), Gaps = 5/120 (4%)
Query: 3 TSSLGLVDTTGG---PGDDYGVLGSTANETEKKSSRRRK-ESSDNQENRGKPEGSSKARK 58
+SSLG TG PGD YG + E EK+S +RK +SSD+QE K E +SK RK
Sbjct: 131 SSSLGSSTPTGAACAPGD-YGRQALSPAEAEKRSGGKRKSDSSDSQEGNYKSEVNSKPRK 189
Query: 59 ERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQ 118
ERTAFTKEQ+RELEAEFAHHNYLTRLRRYEIAVNLDL+ERQVKVWFQNRRMKWKRVKGGQ
Sbjct: 190 ERTAFTKEQIRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRVKGGQ 249
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 85.1 bits (209), Expect = 2e-17
Identities = 47/116 (40%), Positives = 68/116 (58%), Gaps = 5/116 (4%)
Query: 4 SSLGLVDTTGGPGD-----DYGVLGSTANETEKKSSRRRKESSDNQENRGKPEGSSKARK 58
+ +G TGG + D+ + G + E EK+ S+ +++ D + RK
Sbjct: 228 AGIGAATGTGGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRK 287
Query: 59 ERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRV 114
+R +TK Q ELE EF + YLTR RRYE+A L+L+ERQVK+WFQNRRMK K++
Sbjct: 288 KRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKM 343
>gi|7710150 mesenchyme homeobox 1 isoform 2 [Homo sapiens]
Length = 184
Score = 85.1 bits (209), Expect = 2e-17
Identities = 46/62 (74%), Positives = 51/62 (82%), Gaps = 1/62 (1%)
Query: 1 MGTSSLGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESSDNQENRGKPEGSSKARKER 60
MGTSSLGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESS Q +P+ +A + R
Sbjct: 116 MGTSSLGLVDTTGGPGDDYGVLGSTANETEKKSSRRRKESS-GQSVVPEPKDEVEACEGR 174
Query: 61 TA 62
+A
Sbjct: 175 SA 176
>gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]
Length = 363
Score = 84.3 bits (207), Expect = 3e-17
Identities = 51/122 (41%), Positives = 64/122 (52%), Gaps = 8/122 (6%)
Query: 12 TGGPGDDYGVLGSTAN--------ETEKKSSRRRKESSDNQENRGKPEGSSKARKERTAF 63
+GG +D G L S+A + + K S G K+R+ RTAF
Sbjct: 209 SGGDSEDDGFLDSSAGGPGALLGPKPKLKGSLGTGAEEGAPVTAGVTAPGGKSRRRRTAF 268
Query: 64 TKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPISPN 123
T EQL ELE EF YL+ R +IA L LSE QVK+WFQNRR KWKR+K G S +
Sbjct: 269 TSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGNVSSRS 328
Query: 124 GQ 125
G+
Sbjct: 329 GE 330
>gi|45593144 gastrulation brain homeo box 2 [Homo sapiens]
Length = 348
Score = 84.3 bits (207), Expect = 3e-17
Identities = 48/108 (44%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 18 DYGVLGSTANETEKKSSRRRKESSDNQENRGKPEGSSKARKERTAFTKEQLRELEAEFAH 77
D + G A++ E+ +E+ + G + K R+ RTAFT EQL ELE EF
Sbjct: 210 DDNLTGQAAHK-EEDPGHALEETPPSSGAAGSTTSTGKNRRRRTAFTSEQLLELEKEFHC 268
Query: 78 HNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPISPNGQ 125
YL+ R +IA L LSE QVK+WFQNRR KWKRVK G S G+
Sbjct: 269 KKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVKAGNANSKTGE 316
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 82.8 bits (203), Expect = 8e-17
Identities = 44/104 (42%), Positives = 66/104 (63%), Gaps = 4/104 (3%)
Query: 28 ETEKKSSRRRKESSDNQENRG--KPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLR 85
E+ + + ++ SS + G P G + +++ RTA+T QL ELE EF + YL R R
Sbjct: 3 ESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPR 62
Query: 86 RYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPI--SPNGQDP 127
R E+A L+L+ERQ+K+WFQNRRMK+K+ + G+ + S GQ P
Sbjct: 63 RVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSP 106
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 82.8 bits (203), Expect = 8e-17
Identities = 44/104 (42%), Positives = 66/104 (63%), Gaps = 4/104 (3%)
Query: 28 ETEKKSSRRRKESSDNQENRG--KPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLR 85
E+ + + ++ SS + G P G + +++ RTA+T QL ELE EF + YL R R
Sbjct: 161 ESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPR 220
Query: 86 RYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPI--SPNGQDP 127
R E+A L+L+ERQ+K+WFQNRRMK+K+ + G+ + S GQ P
Sbjct: 221 RVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSP 264
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 82.8 bits (203), Expect = 8e-17
Identities = 44/104 (42%), Positives = 66/104 (63%), Gaps = 4/104 (3%)
Query: 28 ETEKKSSRRRKESSDNQENRG--KPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLR 85
E+ + + ++ SS + G P G + +++ RTA+T QL ELE EF + YL R R
Sbjct: 161 ESRQNTKQKTSSSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPR 220
Query: 86 RYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPI--SPNGQDP 127
R E+A L+L+ERQ+K+WFQNRRMK+K+ + G+ + S GQ P
Sbjct: 221 RVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSP 264
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 82.4 bits (202), Expect = 1e-16
Identities = 48/93 (51%), Positives = 61/93 (65%), Gaps = 9/93 (9%)
Query: 50 PEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRM 109
P GS+ +++ RTA+T QL ELE EF + YL R RR E+A L+LSERQ+K+WFQNRRM
Sbjct: 182 PPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRM 241
Query: 110 KWK---RVKG-----GQPISPNGQDPEDGDSTA 134
K+K + KG G P SP G P+ STA
Sbjct: 242 KYKKDQKAKGLASSSGGP-SPAGSPPQPMQSTA 273
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 81.6 bits (200), Expect = 2e-16
Identities = 39/68 (57%), Positives = 52/68 (76%), Gaps = 6/68 (8%)
Query: 46 NRGKPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQ 105
N G+P ++ RTA+T++Q+ ELE EF ++ YLTR RR EIA +L LSERQ+K+WFQ
Sbjct: 152 NGGEP------KRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQ 205
Query: 106 NRRMKWKR 113
NRRMKWK+
Sbjct: 206 NRRMKWKK 213
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 81.6 bits (200), Expect = 2e-16
Identities = 39/68 (57%), Positives = 52/68 (76%), Gaps = 6/68 (8%)
Query: 46 NRGKPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQ 105
N G+P ++ RTA+T++Q+ ELE EF ++ YLTR RR EIA +L LSERQ+K+WFQ
Sbjct: 152 NGGEP------KRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQ 205
Query: 106 NRRMKWKR 113
NRRMKWK+
Sbjct: 206 NRRMKWKK 213
>gi|5031759 homeobox A11 [Homo sapiens]
Length = 313
Score = 81.3 bits (199), Expect = 2e-16
Identities = 50/125 (40%), Positives = 70/125 (56%), Gaps = 13/125 (10%)
Query: 3 TSSLGLVDTTGGPGDDYGVLGS------TANETEKKSSRRRKESSDNQENRG-----KPE 51
TS+ TG P G TA E+K RRR ESS + E+ K
Sbjct: 175 TSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEEKERRRRPESSSSPESSSGHTEDKAG 234
Query: 52 GSS--KARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRM 109
GSS + RK+R +TK Q+RELE EF Y+ + +R +++ L+L++RQVK+WFQNRRM
Sbjct: 235 GSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRM 294
Query: 110 KWKRV 114
K K++
Sbjct: 295 KEKKI 299
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 81.3 bits (199), Expect = 2e-16
Identities = 41/71 (57%), Positives = 51/71 (71%), Gaps = 4/71 (5%)
Query: 43 NQENRGKPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKV 102
+ +N G PEG ++ RTA+T+ Q ELE EF + YLTR RR EIA L LSERQ+K+
Sbjct: 186 SHDNIGGPEG----KRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKI 241
Query: 103 WFQNRRMKWKR 113
WFQNRRMKWK+
Sbjct: 242 WFQNRRMKWKK 252
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 81.3 bits (199), Expect = 2e-16
Identities = 52/119 (43%), Positives = 66/119 (55%), Gaps = 24/119 (20%)
Query: 30 EKKSSRRRKESSDNQ----------------ENRGKPE-GSSKARKERTAFTKEQLRELE 72
EKKS+++ +S+ + + G PE G AR+ RTA+T QL ELE
Sbjct: 100 EKKSAKKPSQSATSPSPAASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELE 159
Query: 73 AEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPISPNGQDPEDGD 131
EF + YL R RR EIA LDL+ERQVKVWFQNRRMK KR ++P DG+
Sbjct: 160 KEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKR-------QTQHREPPDGE 211
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 80.9 bits (198), Expect = 3e-16
Identities = 37/61 (60%), Positives = 48/61 (78%)
Query: 55 KARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRV 114
K R+ RTAFT +QL ELE +F + YL+R +R+E+A +L L+E QVK+WFQNRRMKWKR
Sbjct: 240 KCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRS 299
Query: 115 K 115
K
Sbjct: 300 K 300
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 80.9 bits (198), Expect = 3e-16
Identities = 42/84 (50%), Positives = 53/84 (63%), Gaps = 16/84 (19%)
Query: 57 RKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKR--- 113
++ RTA+T++Q+ ELE EF ++ YLTR RR EIA L LSERQ+K+WFQNRRMKWK+
Sbjct: 163 KRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHK 222
Query: 114 -------------VKGGQPISPNG 124
GG P PNG
Sbjct: 223 LPNTKIRSGGAAGSAGGPPGRPNG 246
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 80.5 bits (197), Expect = 4e-16
Identities = 40/68 (58%), Positives = 50/68 (73%), Gaps = 6/68 (8%)
Query: 46 NRGKPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQ 105
N G+P ++ RTA+T++Q+ ELE EF + YLTR RR EIA L LSERQVK+WFQ
Sbjct: 211 NGGEP------KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQ 264
Query: 106 NRRMKWKR 113
NRRMKWK+
Sbjct: 265 NRRMKWKK 272
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 79.7 bits (195), Expect = 7e-16
Identities = 36/57 (63%), Positives = 46/57 (80%)
Query: 57 RKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKR 113
++ RTA+T++Q+ ELE EF + YLTR RR EIA L LSERQ+K+WFQNRRMKWK+
Sbjct: 155 KRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKK 211
>gi|5031761 homeobox A1 isoform a [Homo sapiens]
Length = 335
Score = 79.3 bits (194), Expect = 9e-16
Identities = 46/82 (56%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Query: 60 RTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKR--VKGG 117
RT FT +QL ELE EF + YLTR RR EIA +L L+E QVK+WFQNRRMK K+ +G
Sbjct: 233 RTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGL 292
Query: 118 QPISPNGQDPEDGDSTASPSSE 139
PISP P D A SSE
Sbjct: 293 LPISP--ATPPGNDEKAEESSE 312
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 78.6 bits (192), Expect = 2e-15
Identities = 49/107 (45%), Positives = 65/107 (60%), Gaps = 7/107 (6%)
Query: 24 STANETEKKSSRRRKESSDNQENRGKPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTR 83
S N +K S ES E++ P +SK + RTA+T QL ELE EF + YL R
Sbjct: 167 SRQNSKQKNSCATAGESC---EDKSPPGPASK--RVRTAYTSAQLVELEKEFHFNRYLCR 221
Query: 84 LRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPI--SPNGQDPE 128
RR E+A L+L+ERQ+K+WFQNRRMK+K+ + + I SP Q PE
Sbjct: 222 PRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKAKGILHSPASQSPE 268
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 78.2 bits (191), Expect = 2e-15
Identities = 38/88 (43%), Positives = 55/88 (62%), Gaps = 5/88 (5%)
Query: 57 RKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVK- 115
++ RTA+T+ QL ELE EF + Y++R RR E+AV L+L+ER +K+WFQNRRMKWK+ +
Sbjct: 147 KRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEED 206
Query: 116 ----GGQPISPNGQDPEDGDSTASPSSE 139
GG + G + D + E
Sbjct: 207 KKRGGGTAVGGGGVAEPEQDCAVTSGEE 234
>gi|24497533 homeobox C10 [Homo sapiens]
Length = 342
Score = 78.2 bits (191), Expect = 2e-15
Identities = 41/99 (41%), Positives = 59/99 (59%), Gaps = 11/99 (11%)
Query: 27 NETEKKSSRRRKESSDNQENRGKPE-----------GSSKARKERTAFTKEQLRELEAEF 75
+E+EK+ ++ S D +N K E + RK+R +TK Q ELE EF
Sbjct: 228 SESEKERAKAADSSPDTSDNEAKEEIKAENTTGNWLTAKSGRKKRCPYTKHQTLELEKEF 287
Query: 76 AHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRV 114
+ YLTR RR EI+ ++L++RQVK+WFQNRRMK K++
Sbjct: 288 LFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKM 326
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 77.8 bits (190), Expect = 3e-15
Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 8/110 (7%)
Query: 13 GGPGDDYGVLGSTANETEKKSSRRRKESSDNQENRGKPEGSSKA--------RKERTAFT 64
G GD+ S+A E + ++S +++ G +G + A RK+R +T
Sbjct: 285 GSQGDEEAHASSSAAEELSPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYT 344
Query: 65 KEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRV 114
K Q ELE EF + YLTR RR EI+ ++ L++RQVK+WFQNRRMK K++
Sbjct: 345 KHQTLELEKEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKM 394
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 77.8 bits (190), Expect = 3e-15
Identities = 47/109 (43%), Positives = 59/109 (54%), Gaps = 24/109 (22%)
Query: 26 ANETEKKSSRRRKESSDNQENRGKPEGSSK---------------------ARKERTAFT 64
A E KSS KE Q G+P G S+ ++ RT++T
Sbjct: 107 ALEERAKSSGEIKEE---QAQTGQPAGLSQPPAPPQIYPWMTKLHMSHETDGKRSRTSYT 163
Query: 65 KEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKR 113
+ Q ELE EF + YLTR RR EIA NL L+ERQ+K+WFQNRRMKWK+
Sbjct: 164 RYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKK 212
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 77.0 bits (188), Expect = 5e-15
Identities = 46/117 (39%), Positives = 63/117 (53%), Gaps = 5/117 (4%)
Query: 15 PGDDYGVLGSTANETEKKSSRRRKESSDNQENRGKPEGSSKARKERTAFTKEQLRELEAE 74
PGD A E++ S ES+ + G+ + R +T +T+ Q ELE E
Sbjct: 101 PGDS----AKAAGAKEQRDSDLAAESNFRIYPWMRSSGTDRKRGRQT-YTRYQTLELEKE 155
Query: 75 FAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVKGGQPISPNGQDPEDGD 131
F ++ YLTR RR EIA L L+ERQ+K+WFQNRRMKWK+ GQD + +
Sbjct: 156 FHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKTAGPGTTGQDRAEAE 212
>gi|33457326 GS homeobox 1 [Homo sapiens]
Length = 264
Score = 77.0 bits (188), Expect = 5e-15
Identities = 41/79 (51%), Positives = 52/79 (65%)
Query: 56 ARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVK 115
+++ RTAFT QL ELE EFA + YL+RLRR EIA L+LSE+QVK+WFQNRR+K K+
Sbjct: 147 SKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEG 206
Query: 116 GGQPISPNGQDPEDGDSTA 134
G G G +A
Sbjct: 207 KGSNHRGGGGGGAGGGGSA 225
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 76.6 bits (187), Expect = 6e-15
Identities = 36/84 (42%), Positives = 54/84 (64%)
Query: 49 KPEGSSKARKERTAFTKEQLRELEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRR 108
+P+ + R+ R +++ Q ELE EF + YLTR RR E++ L L+ERQVK+WFQNRR
Sbjct: 190 RPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRR 249
Query: 109 MKWKRVKGGQPISPNGQDPEDGDS 132
MKWK+ + Q+ +DG++
Sbjct: 250 MKWKKENNKDKFPVSRQEVKDGET 273
>gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]
Length = 325
Score = 76.3 bits (186), Expect = 8e-15
Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 15 PGDDYGVLGST----ANETEKKSSRRRKESSDNQENRGKPEGSSKARKERTAFTKEQLRE 70
PG+D +GST A + + + N G+ +G K ++ RT FT QL E
Sbjct: 59 PGEDITTVGSTPASLAVSAKDPDKQPGPQGGPNPSQAGQQQGQQKQKRHRTRFTPAQLNE 118
Query: 71 LEAEFAHHNYLTRLRRYEIAVNLDLSERQVKVWFQNRRMKWKRVK 115
LE FA +Y R E+A+ + L+E +V+VWFQNRR KWK+ K
Sbjct: 119 LERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRK 163
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.126 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,927,587
Number of Sequences: 37866
Number of extensions: 254981
Number of successful extensions: 2164
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 118
Number of HSP's that attempted gapping in prelim test: 1482
Number of HSP's gapped (non-prelim): 757
length of query: 139
length of database: 18,247,518
effective HSP length: 92
effective length of query: 47
effective length of database: 14,763,846
effective search space: 693900762
effective search space used: 693900762
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.