Search of human proteins with 90403598

Search of human proteins with 90403598

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|90403598 mesoderm posterior 2 homolog [Homo sapiens]
         (397 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|90403598 mesoderm posterior 2 homolog [Homo sapiens]               840   0.0  
gi|14149724 mesoderm posterior 1 [Homo sapiens]                       228   7e-60
gi|157739932 mesogenin 1 [Homo sapiens]                                79   9e-15
gi|239751178 PREDICTED: basic helix-loop-helix family, member a9...    59   8e-09
gi|239745666 PREDICTED: basic helix-loop-helix family, member a9...    59   8e-09
gi|68989258 neurogenin 3 [Homo sapiens]                                58   2e-08
gi|239756681 PREDICTED: basic helix-loop-helix family, member a9...    56   7e-08
gi|30039710 pancreas specific transcription factor, 1a [Homo sap...    56   7e-08
gi|29126247 basic helix-loop-helix family, member a15 [Homo sapi...    55   8e-08
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    54   2e-07
gi|48255909 basic helix-loop-helix transcription factor 15 [Homo...    54   2e-07
gi|148922889 scleraxis homolog B [Homo sapiens]                        52   9e-07
gi|186972126 scleraxis homolog A [Homo sapiens]                        52   9e-07
gi|4758506 basic helix-loop-helix transcription factor HAND1 [Ho...    52   1e-06
gi|91208418 transcription elongation regulator 1 isoform 2 [Homo...    51   2e-06
gi|21327715 transcription elongation regulator 1 isoform 1 [Homo...    51   2e-06
gi|239749439 PREDICTED: similar to transcription factor 23 [Homo...    50   4e-06
gi|239743573 PREDICTED: similar to transcription factor 23 [Homo...    50   4e-06
gi|5031943 nescient helix loop helix 1 [Homo sapiens]                  50   5e-06
gi|239754900 PREDICTED: similar to transcription factor 23 [Homo...    49   6e-06
gi|38202237 transcription factor 21 [Homo sapiens]                     49   8e-06
gi|38202239 transcription factor 21 [Homo sapiens]                     49   8e-06
gi|31077092 neurogenin 2 [Homo sapiens]                                49   8e-06
gi|38455396 neurogenin 1 [Homo sapiens]                                49   1e-05
gi|4505299 myogenic factor 6 [Homo sapiens]                            48   1e-05
gi|116805332 musculin [Homo sapiens]                                   48   1e-05
gi|239743072 PREDICTED: hypothetical protein [Homo sapiens]            47   2e-05
gi|239508718 PREDICTED: hypothetical protein [Homo sapiens]            47   2e-05
gi|161484632 nescient helix loop helix 2 [Homo sapiens]                47   2e-05
gi|5031945 nescient helix loop helix 2 [Homo sapiens]                  47   2e-05

>gi|90403598 mesoderm posterior 2 homolog [Homo sapiens]
          Length = 397

 Score =  840 bits (2169), Expect = 0.0
 Identities = 397/397 (100%), Positives = 397/397 (100%)

Query: 1   MAQSPPPQSLLGHDHWIFAQGWGWAGHWDSTSPASSSDSSGSCPCDGARGLPQPQPPSCS 60
           MAQSPPPQSLLGHDHWIFAQGWGWAGHWDSTSPASSSDSSGSCPCDGARGLPQPQPPSCS
Sbjct: 1   MAQSPPPQSLLGHDHWIFAQGWGWAGHWDSTSPASSSDSSGSCPCDGARGLPQPQPPSCS 60

Query: 61  SRAAEAAATTPRRARTGPAGGQRQSASEREKLRMRTLARALHELRRFLPPSLAPAGQSLT 120
           SRAAEAAATTPRRARTGPAGGQRQSASEREKLRMRTLARALHELRRFLPPSLAPAGQSLT
Sbjct: 61  SRAAEAAATTPRRARTGPAGGQRQSASEREKLRMRTLARALHELRRFLPPSLAPAGQSLT 120

Query: 121 KIETLRLAIRYIGHLSAVLGLSEESLQCRRRQRGDAGSPWGCPLCPDRGPAEAQTQAEGQ 180
           KIETLRLAIRYIGHLSAVLGLSEESLQCRRRQRGDAGSPWGCPLCPDRGPAEAQTQAEGQ
Sbjct: 121 KIETLRLAIRYIGHLSAVLGLSEESLQCRRRQRGDAGSPWGCPLCPDRGPAEAQTQAEGQ 180

Query: 181 GQGQGQGQGQGQGQGQGQGQGQGQGRRPGLVSAVLAEASWGSPSACPGAQAAPERLGRGV 240
           GQGQGQGQGQGQGQGQGQGQGQGQGRRPGLVSAVLAEASWGSPSACPGAQAAPERLGRGV
Sbjct: 181 GQGQGQGQGQGQGQGQGQGQGQGQGRRPGLVSAVLAEASWGSPSACPGAQAAPERLGRGV 240

Query: 241 HDTDPWATPPYCPKIQSPPYSSQGTTSDASLWTPPQGCPWTQSSPEPRNPPVPWTAAPAT 300
           HDTDPWATPPYCPKIQSPPYSSQGTTSDASLWTPPQGCPWTQSSPEPRNPPVPWTAAPAT
Sbjct: 241 HDTDPWATPPYCPKIQSPPYSSQGTTSDASLWTPPQGCPWTQSSPEPRNPPVPWTAAPAT 300

Query: 301 LELAAVYQGLSVSPEPCLSLGAPSLLPHPSCQRLQPQTPGRCWSHSAEVVPNSEDQGPGA 360
           LELAAVYQGLSVSPEPCLSLGAPSLLPHPSCQRLQPQTPGRCWSHSAEVVPNSEDQGPGA
Sbjct: 301 LELAAVYQGLSVSPEPCLSLGAPSLLPHPSCQRLQPQTPGRCWSHSAEVVPNSEDQGPGA 360

Query: 361 AFQLSEASPPQSSGLRFSGCPELWQEDLEGARLGIFY 397
           AFQLSEASPPQSSGLRFSGCPELWQEDLEGARLGIFY
Sbjct: 361 AFQLSEASPPQSSGLRFSGCPELWQEDLEGARLGIFY 397


>gi|14149724 mesoderm posterior 1 [Homo sapiens]
          Length = 268

 Score =  228 bits (581), Expect = 7e-60
 Identities = 136/235 (57%), Positives = 148/235 (62%), Gaps = 32/235 (13%)

Query: 6   PPQSLLGHDHWIFAQGWGWAGHWDST------SPASSSDSSGSCPCDGARGLPQPQPPSC 59
           PP S    + W+ +  WG       +      S  SS DS GS P D     P       
Sbjct: 7   PPLS----ESWMLSAAWGPTRRPPPSDKDCGRSLVSSPDSWGSTPADSPVASPARPGTLR 62

Query: 60  SSRAAEAAATTPRRARTGPAGGQRQSASEREKLRMRTLARALHELRRFLPPSLAPAGQSL 119
             RA        R +R G   GQRQSASEREKLRMRTLARALHELRRFLPPS+APAGQSL
Sbjct: 63  DPRAPSVGRRGARSSRLG--SGQRQSASEREKLRMRTLARALHELRRFLPPSVAPAGQSL 120

Query: 120 TKIETLRLAIRYIGHLSAVLGLSEESLQCRRRQRGDAGSPWGCPLCPDRGPAEAQTQAEG 179
           TKIETLRLAIRYIGHLSAVLGLSEESLQ R RQRGDAGSP GCPLCPD  PA+ QT+ + 
Sbjct: 121 TKIETLRLAIRYIGHLSAVLGLSEESLQRRCRQRGDAGSPRGCPLCPDDCPAQMQTRTQA 180

Query: 180 QGQGQGQGQGQGQGQGQGQGQGQGQGRRPGLVSAVLAEASWGSPSACPGAQAAPE 234
           +GQGQG+G                     GLVSAV A ASWGSP ACPGA+AAPE
Sbjct: 181 EGQGQGRGL--------------------GLVSAVRAGASWGSPPACPGARAAPE 215


>gi|157739932 mesogenin 1 [Homo sapiens]
          Length = 193

 Score = 78.6 bits (192), Expect = 9e-15
 Identities = 56/142 (39%), Positives = 67/142 (47%), Gaps = 27/142 (19%)

Query: 30  STSPASSSDSSGSCPCDGARGLPQPQ-------PPSCSSRAAE----------AAATTPR 72
           S SPA S +S  S PC    GLP             CS   A           A   T  
Sbjct: 46  SLSPAPSLESYSSSPCPAVAGLPCEHGGASSGGSEGCSVGGASGLVEVDYNMLAFQPTHL 105

Query: 73  RARTGPAGGQ----------RQSASEREKLRMRTLARALHELRRFLPPSLAPAGQSLTKI 122
           +   GP   +          R+ ASEREKLRMRTLA ALH LR +LPP  +  GQ LTKI
Sbjct: 106 QGGGGPKAQKGTKVRMSVQRRRKASEREKLRMRTLADALHTLRNYLPPVYSQRGQPLTKI 165

Query: 123 ETLRLAIRYIGHLSAVLGLSEE 144
           +TL+  I+YIG L+ +L    E
Sbjct: 166 QTLKYTIKYIGELTDLLNRGRE 187


>gi|239751178 PREDICTED: basic helix-loop-helix family, member a9
           [Homo sapiens]
          Length = 235

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 68/206 (33%), Positives = 85/206 (41%), Gaps = 18/206 (8%)

Query: 35  SSSDSSGSCPCDGA-RGLPQPQPPSCSSRAAEAAATTPRRARTGPAGGQRQSASEREKLR 93
           S+ D  G CP  G   G+      SCS   AE  A   RRAR   +  +R +A+ RE+ R
Sbjct: 19  SAEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGR-RRARPVRSKARRMAANVRERKR 77

Query: 94  MRTLARALHELRRFLPPSLAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEE------SLQ 147
           +     A + LRR L   L   G+ L+KI TLR AI  I  LS VL  S         L+
Sbjct: 78  ILDYNEAFNALRRALRHDL--GGKRLSKIATLRRAIHRIAALSLVLRASPAPRGPCGHLE 135

Query: 148 CR-RRQRGDAGSPWGCPLCPDRGPAEAQTQAEGQGQGQGQGQGQGQGQGQGQGQGQGQGR 206
           C     RGD G     P  P  GP+ A+  A                      +      
Sbjct: 136 CHGPAARGDTGDTGASP-PPPAGPSLARPDAARPSVPSAPRCASCPPHAP-LARPSAVAE 193

Query: 207 RPGLVSAVLAEASWGSPSACPGAQAA 232
            PG     LA+AS GS   CPGA +A
Sbjct: 194 GPG-----LAQASGGSWRRCPGASSA 214


>gi|239745666 PREDICTED: basic helix-loop-helix family, member a9
           [Homo sapiens]
          Length = 235

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 68/206 (33%), Positives = 85/206 (41%), Gaps = 18/206 (8%)

Query: 35  SSSDSSGSCPCDGA-RGLPQPQPPSCSSRAAEAAATTPRRARTGPAGGQRQSASEREKLR 93
           S+ D  G CP  G   G+      SCS   AE  A   RRAR   +  +R +A+ RE+ R
Sbjct: 19  SAEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGR-RRARPVRSKARRMAANVRERKR 77

Query: 94  MRTLARALHELRRFLPPSLAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEE------SLQ 147
           +     A + LRR L   L   G+ L+KI TLR AI  I  LS VL  S         L+
Sbjct: 78  ILDYNEAFNALRRALRHDL--GGKRLSKIATLRRAIHRIAALSLVLRASPAPRGPCGHLE 135

Query: 148 CR-RRQRGDAGSPWGCPLCPDRGPAEAQTQAEGQGQGQGQGQGQGQGQGQGQGQGQGQGR 206
           C     RGD G     P  P  GP+ A+  A                      +      
Sbjct: 136 CHGPAARGDTGDTGASP-PPPAGPSLARPDAARPSVPSAPRCASCPPHAP-LARPSAVAE 193

Query: 207 RPGLVSAVLAEASWGSPSACPGAQAA 232
            PG     LA+AS GS   CPGA +A
Sbjct: 194 GPG-----LAQASGGSWRRCPGASSA 214


>gi|68989258 neurogenin 3 [Homo sapiens]
          Length = 214

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 49/143 (34%), Positives = 69/143 (48%), Gaps = 18/143 (12%)

Query: 30  STSPASSSDSSGSCPC---DGARGLPQPQPPSCSSRA---AEAAATTPRRARTGPAGGQR 83
           +++P S + + G+C      G RG P+        R+   +E A +  RR+R       R
Sbjct: 33  TSAPPSPTRTRGNCAEAEEGGCRGAPRKLRARRGGRSRPKSELALSKQRRSR-------R 85

Query: 84  QSASEREKLRMRTLARALHELRRFLPPSLAPAGQSLTKIETLRLAIRYIGHLSAVLGLSE 143
           + A++RE+ RM  L  AL  LR  LP    P    LTKIETLR A  YI  L+  L +++
Sbjct: 86  KKANDRERNRMHNLNSALDALRGVLPTF--PDDAKLTKIETLRFAHNYIWALTQTLRIAD 143

Query: 144 ESLQCRRRQR---GDAGSPWGCP 163
            SL          G+ GSP G P
Sbjct: 144 HSLYALEPPAPHCGELGSPGGSP 166


>gi|239756681 PREDICTED: basic helix-loop-helix family, member a9
           [Homo sapiens]
          Length = 203

 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 55/151 (36%), Positives = 69/151 (45%), Gaps = 12/151 (7%)

Query: 35  SSSDSSGSCPCDGA-RGLPQPQPPSCSSRAAEAAATTPRRARTGPAGGQRQSASEREKLR 93
           S+ D  G CP  G   G+      SCS   AE  A   RRAR   +  +R +A+ RE+ R
Sbjct: 19  SAEDLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGR-RRARPVRSKARRMAANVRERKR 77

Query: 94  MRTLARALHELRRFLPPSLAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEE------SLQ 147
           +     A + LRR L   L   G+ L+KI TLR AI  I  LS VL  S         L+
Sbjct: 78  ILDYNEAFNALRRALRHDL--GGKRLSKIATLRRAIHRIAALSLVLRASPAPRGPCGHLE 135

Query: 148 CR-RRQRGDAGSPWGCPLCPDRGPAEAQTQA 177
           C     RGD G     P  P  GP+ A+  A
Sbjct: 136 CHGPAARGDTGDTGASP-PPPAGPSLARPDA 165


>gi|30039710 pancreas specific transcription factor, 1a [Homo
           sapiens]
          Length = 328

 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 50/130 (38%), Positives = 63/130 (48%), Gaps = 9/130 (6%)

Query: 36  SSDSSGSC---PCDGARGLPQPQPPSCSSRAAEAAATTPRRARTGPAGGQ-RQSASEREK 91
           S  S  SC   PC GA  L         S AA AAA   RR R+     Q RQ+A+ RE+
Sbjct: 114 SPGSPPSCLAYPCAGAAVLSPGARLRGLSGAAAAAARRRRRVRSEAELQQLRQAANVRER 173

Query: 92  LRMRTLARALHELRRFLPPSLAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEESLQCRRR 151
            RM+++  A   LR  +P    P  + L+K++TLRLAI YI  LS    L +  L  R  
Sbjct: 174 RRMQSINDAFEGLRSHIPT--LPYEKRLSKVDTLRLAIGYINFLSE---LVQADLPLRGG 228

Query: 152 QRGDAGSPWG 161
             G  G P G
Sbjct: 229 GAGGCGGPGG 238


>gi|29126247 basic helix-loop-helix family, member a15 [Homo
           sapiens]
          Length = 189

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 44/107 (41%), Positives = 56/107 (52%), Gaps = 15/107 (14%)

Query: 46  DGARGLPQPQPPS-CSSRAAEAAATTP---RRARTGPAG--GQRQSA-------SEREKL 92
           DG+   P P+P     SR A AAA  P   RR R GP+G  G+R S+       +ERE+ 
Sbjct: 27  DGSLPNPGPEPAKGLRSRPARAAARAPGEGRRRRPGPSGPGGRRDSSIQRRLESNERERQ 86

Query: 93  RMRTLARALHELRRFLPPSLAPAGQSLTKIETLRLAIRYIGHLSAVL 139
           RM  L  A   LR  +P     A + L+KIETL LA  YI  L+A +
Sbjct: 87  RMHKLNNAFQALREVIPH--VRADKKLSKIETLTLAKNYIKSLTATI 131


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 98/380 (25%), Positives = 128/380 (33%), Gaps = 102/380 (26%)

Query: 27  HWDSTSPASSSDSSGSCPCDGARGLPQPQPPSCSSRAAEAAATTPRRARTGPAGGQRQSA 86
           H  S SPA ++ +  + P +GA G   P+PP               RAR G  G QR   
Sbjct: 61  HVVSGSPAGAAGAGPAAPAEGAPGAA-PEPPPAG------------RARPGGGGPQRPG- 106

Query: 87  SEREKLRMRTLARALHELRRFLPPS----LAPAGQSLTKIETLRLAIRYIGHLSAVLGLS 142
                                 PPS    L PAG +                        
Sbjct: 107 ----------------------PPSPRRPLVPAGPA------------------------ 120

Query: 143 EESLQCRRRQRGDAGSPWGCPLC------PDRGPAEAQTQAEGQGQGQGQGQGQGQGQGQ 196
             + + R    G AGS    P        P+  PA     A         G G G G G 
Sbjct: 121 PPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGP 180

Query: 197 GQGQGQGQGRRPGLV-----SAVLAEASWGSPSACPGAQAAPERL--------GRGVHDT 243
           G G G G+   PG       SA L  +   +  A       P  L           V  T
Sbjct: 181 GPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQT 240

Query: 244 DPW--ATPPYCPKIQSPPYSSQGTTSDASLWTPPQGCPWTQSSPEPRNPPVPWTAAPATL 301
            P+  A  P  P   SPP ++    + A+   PP   P T + P P +P  P TAAPA  
Sbjct: 241 PPFVGAAAPPAPAAPSPP-AAPAPAAPAAAPPPPPPAPATLARP-PGHPAGPPTAAPAVP 298

Query: 302 ELAAVYQGLS--VSPEPCLSLGAPSLLPHPSCQRLQPQTPGRCWSHSAEVVPNSEDQGPG 359
             AA   G S   +P P  + G P+ +        QP  PG   + +A   P  + + P 
Sbjct: 299 PPAAAQNGGSAGAAPAPAPAAGGPAGVSG------QP-GPG---AAAAAPAPGVKAESPK 348

Query: 360 AAFQLSEASPPQSSGLRFSG 379
              Q   A+PP +  L  SG
Sbjct: 349 RVVQ---AAPPAAQTLAASG 365


>gi|48255909 basic helix-loop-helix transcription factor 15 [Homo
           sapiens]
          Length = 199

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 8/141 (5%)

Query: 29  DSTSPASSSDSSGSCPCDGARGLPQPQPPSCSSRAAEAAATTPRRARTGPAGGQRQSASE 88
           ++ S + +SD S  C C+G     +   P    RA       P          QRQ+A+ 
Sbjct: 26  ENRSESDASDQSFGC-CEGPEAARRGPGPGGGRRAGGGGGAGPVVVVR-----QRQAANA 79

Query: 89  REKLRMRTLARALHELRRFLPPSLAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEESLQC 148
           RE+ R +++  A   LR  +P    P  + L+KIETLRLA  YI HL+ VL L + +   
Sbjct: 80  RERDRTQSVNTAFTALRTLIPTE--PVDRKLSKIETLRLASSYIAHLANVLLLGDSADDG 137

Query: 149 RRRQRGDAGSPWGCPLCPDRG 169
           +   R    +    P   D G
Sbjct: 138 QPCFRAAGSAKGAVPAAADGG 158


>gi|148922889 scleraxis homolog B [Homo sapiens]
          Length = 201

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 43/113 (38%), Positives = 52/113 (46%), Gaps = 21/113 (18%)

Query: 37  SDSSGS----CPCDGARGLPQPQPPSCSSRAAEAAATTPRRARTGPAGG------QRQSA 86
           SDSSGS    C    AR         C  + A   A   R    GP G       QR +A
Sbjct: 30  SDSSGSDEKPCRVHAAR---------CGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTA 80

Query: 87  SEREKLRMRTLARALHELRRFLPPSLAPAGQSLTKIETLRLAIRYIGHLSAVL 139
           + RE+ R  ++  A   LR  +P    PA + L+KIETLRLA  YI HL  VL
Sbjct: 81  NARERDRTNSVNTAFTALRTLIPTE--PADRKLSKIETLRLASSYISHLGNVL 131


>gi|186972126 scleraxis homolog A [Homo sapiens]
          Length = 201

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 43/113 (38%), Positives = 52/113 (46%), Gaps = 21/113 (18%)

Query: 37  SDSSGS----CPCDGARGLPQPQPPSCSSRAAEAAATTPRRARTGPAGG------QRQSA 86
           SDSSGS    C    AR         C  + A   A   R    GP G       QR +A
Sbjct: 30  SDSSGSDEKPCRVHAAR---------CGLQGARRRAGGRRAGGGGPGGRPGREPRQRHTA 80

Query: 87  SEREKLRMRTLARALHELRRFLPPSLAPAGQSLTKIETLRLAIRYIGHLSAVL 139
           + RE+ R  ++  A   LR  +P    PA + L+KIETLRLA  YI HL  VL
Sbjct: 81  NARERDRTNSVNTAFTALRTLIPTE--PADRKLSKIETLRLASSYISHLGNVL 131


>gi|4758506 basic helix-loop-helix transcription factor HAND1 [Homo
           sapiens]
          Length = 215

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 10/110 (9%)

Query: 44  PCDGARGLPQPQPPSCSSRAAEAAATTPRRART--------GPAGGQRQSASEREKLRMR 95
           P D A   P   PP  ++ AA A     R  ++        G  G ++ S  ++E+ R  
Sbjct: 49  PADAAPDFPAGGPPPAAAAAATAYGPDARPGQSPGRLEALGGRLGRRKGSGPKKERRRTE 108

Query: 96  TLARALHELRRFLPPSLAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEES 145
           ++  A  ELR  +P    PA   L+KI+TLRLA  YI +L  VL    +S
Sbjct: 109 SINSAFAELRECIPN--VPADTKLSKIKTLRLATSYIAYLMDVLAKDAQS 156


>gi|91208418 transcription elongation regulator 1 isoform 2 [Homo
           sapiens]
          Length = 1077

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 44/169 (26%), Positives = 60/169 (35%), Gaps = 14/169 (8%)

Query: 171 AEAQTQAEGQGQGQGQGQGQGQGQGQGQGQGQGQGRRPGLVSAVLAEASWGSPSACPGAQ 230
           A+AQ QA+ Q Q Q Q Q Q Q Q Q Q Q Q Q +      A     +     A   AQ
Sbjct: 191 AQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQVQAQVQAQ 250

Query: 231 AAPERLGRGVHDTDPWATPPYCPKIQSPPYSSQGTTSDASLWTPPQGCPWTQSSPEPRNP 290
              + +G     T   A         S P S+  TT+ A+        P TQ     + P
Sbjct: 251 VQAQAVGASTPTTSSPAPAVSTSTSSSTPSSTTSTTTTATSVAQTVSTPTTQD----QTP 306

Query: 291 PVPWTAAPATLELAAVYQGLSVSPEPCLSLGAPSLLPHPSCQRLQPQTP 339
               + A  T+ ++           P  +      +P P  Q L P  P
Sbjct: 307 SSAVSVATPTVSVST----------PAPTATPVQTVPQPHPQTLPPAVP 345



 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 46/177 (25%), Positives = 66/177 (37%), Gaps = 9/177 (5%)

Query: 171 AEAQTQAEGQGQGQGQGQGQGQGQGQGQGQGQGQGRRPGLVSAVLAEASWGSPSACPGAQ 230
           A+AQ QA+ Q Q Q Q Q Q Q Q Q Q Q Q Q +      A     +     A   AQ
Sbjct: 179 AQAQVQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQ 238

Query: 231 AAPERLGRGVHDTDPWATPPYCPKIQSPPYSSQGTTSDASLWTPPQGCPWTQSSPEPRNP 290
           A  +   +        A     P   SP  +   +TS ++        P + +S      
Sbjct: 239 AQAQVQAQVQAQVQAQAVGASTPTTSSPAPAVSTSTSSST--------PSSTTSTTTTAT 290

Query: 291 PVPWTAAPATLELAAVYQGLSV-SPEPCLSLGAPSLLPHPSCQRLQPQTPGRCWSHS 346
            V  T +  T +       +SV +P   +S  AP+  P  +  +  PQT      HS
Sbjct: 291 SVAQTVSTPTTQDQTPSSAVSVATPTVSVSTPAPTATPVQTVPQPHPQTLPPAVPHS 347


>gi|21327715 transcription elongation regulator 1 isoform 1 [Homo
           sapiens]
          Length = 1098

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 44/169 (26%), Positives = 60/169 (35%), Gaps = 14/169 (8%)

Query: 171 AEAQTQAEGQGQGQGQGQGQGQGQGQGQGQGQGQGRRPGLVSAVLAEASWGSPSACPGAQ 230
           A+AQ QA+ Q Q Q Q Q Q Q Q Q Q Q Q Q +      A     +     A   AQ
Sbjct: 191 AQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQVQAQVQAQ 250

Query: 231 AAPERLGRGVHDTDPWATPPYCPKIQSPPYSSQGTTSDASLWTPPQGCPWTQSSPEPRNP 290
              + +G     T   A         S P S+  TT+ A+        P TQ     + P
Sbjct: 251 VQAQAVGASTPTTSSPAPAVSTSTSSSTPSSTTSTTTTATSVAQTVSTPTTQD----QTP 306

Query: 291 PVPWTAAPATLELAAVYQGLSVSPEPCLSLGAPSLLPHPSCQRLQPQTP 339
               + A  T+ ++           P  +      +P P  Q L P  P
Sbjct: 307 SSAVSVATPTVSVST----------PAPTATPVQTVPQPHPQTLPPAVP 345



 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 46/177 (25%), Positives = 66/177 (37%), Gaps = 9/177 (5%)

Query: 171 AEAQTQAEGQGQGQGQGQGQGQGQGQGQGQGQGQGRRPGLVSAVLAEASWGSPSACPGAQ 230
           A+AQ QA+ Q Q Q Q Q Q Q Q Q Q Q Q Q +      A     +     A   AQ
Sbjct: 179 AQAQVQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQ 238

Query: 231 AAPERLGRGVHDTDPWATPPYCPKIQSPPYSSQGTTSDASLWTPPQGCPWTQSSPEPRNP 290
           A  +   +        A     P   SP  +   +TS ++        P + +S      
Sbjct: 239 AQAQVQAQVQAQVQAQAVGASTPTTSSPAPAVSTSTSSST--------PSSTTSTTTTAT 290

Query: 291 PVPWTAAPATLELAAVYQGLSV-SPEPCLSLGAPSLLPHPSCQRLQPQTPGRCWSHS 346
            V  T +  T +       +SV +P   +S  AP+  P  +  +  PQT      HS
Sbjct: 291 SVAQTVSTPTTQDQTPSSAVSVATPTVSVSTPAPTATPVQTVPQPHPQTLPPAVPHS 347


>gi|239749439 PREDICTED: similar to transcription factor 23 [Homo
           sapiens]
          Length = 167

 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 44/123 (35%), Positives = 54/123 (43%), Gaps = 23/123 (18%)

Query: 49  RGLPQPQPPSCSSRAAEAAATT--PRRARTGPA-----GGQRQSASE-------REKLRM 94
           RG P   P S S+  A  AA     R  RTGP      GG R  +         RE+ R+
Sbjct: 3   RGRPAGSPLSASAEPAPLAAAIRDSRPGRTGPGPAGPGGGSRSGSGRPAAANAARERSRV 62

Query: 95  RTLARALHELRRFLPPSLAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEESLQCRRRQRG 154
           +TL  A  EL+R LP    P    L+K++ L LA  YI HL+        SLQ       
Sbjct: 63  QTLRHAFLELQRTLPS--VPPDTKLSKLDVLLLATTYIAHLT-------RSLQDDAEAPA 113

Query: 155 DAG 157
           DAG
Sbjct: 114 DAG 116


>gi|239743573 PREDICTED: similar to transcription factor 23 [Homo
           sapiens]
          Length = 167

 Score = 50.1 bits (118), Expect = 4e-06
 Identities = 44/123 (35%), Positives = 54/123 (43%), Gaps = 23/123 (18%)

Query: 49  RGLPQPQPPSCSSRAAEAAATT--PRRARTGPA-----GGQRQSASE-------REKLRM 94
           RG P   P S S+  A  AA     R  RTGP      GG R  +         RE+ R+
Sbjct: 3   RGRPAGSPLSASAEPAPLAAAIRDSRPGRTGPGPAGPGGGSRSGSGRPAAANAARERSRV 62

Query: 95  RTLARALHELRRFLPPSLAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEESLQCRRRQRG 154
           +TL  A  EL+R LP    P    L+K++ L LA  YI HL+        SLQ       
Sbjct: 63  QTLRHAFLELQRTLPS--VPPDTKLSKLDVLLLATTYIAHLT-------RSLQDDAEAPA 113

Query: 155 DAG 157
           DAG
Sbjct: 114 DAG 116


>gi|5031943 nescient helix loop helix 1 [Homo sapiens]
          Length = 133

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 15/120 (12%)

Query: 33  PASSSDSSGSCPCDGARG-------------LPQPQPPSCSSRAAEAAATTPRRARTGPA 79
           P  S   SG   C G  G                P+P     +  +  +   RR R    
Sbjct: 14  PTHSETESGFSDCGGGAGPDGAGPGGPGGGQARGPEPGEPGRKDLQHLSREERRRRRRAT 73

Query: 80  GGQRQSASEREKLRMRTLARALHELRRFLPPSLAPAGQSLTKIETLRLAIRYIGHLSAVL 139
              R + + RE++R+     A  ELR+ LP    P  + L+KIE LRLAI YI +L+ VL
Sbjct: 74  AKYRTAHATRERIRVEAFNLAFAELRKLLPT--LPPDKKLSKIEILRLAICYISYLNHVL 131


>gi|239754900 PREDICTED: similar to transcription factor 23 [Homo
           sapiens]
          Length = 167

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 44/123 (35%), Positives = 56/123 (45%), Gaps = 23/123 (18%)

Query: 49  RGLPQPQPPSCSSRAAEAAATT----PRRARTGPAG-------GQRQSASE---REKLRM 94
           RG P   P S S+  A  AA      P R   GPAG       G  + A+E   RE+ R+
Sbjct: 3   RGRPAGSPLSASAEPAPLAAAIRDXRPGRTGPGPAGLGGGSCSGSGRPAAENAARERSRV 62

Query: 95  RTLARALHELRRFLPPSLAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEESLQCRRRQRG 154
           +TL  A  E++R LP    P    L+K++ L LA  YI HL+        SLQ       
Sbjct: 63  QTLRHAFLEVQRTLPS--VPPDTKLSKLDVLLLATTYIAHLT-------RSLQDDAEAPA 113

Query: 155 DAG 157
           DAG
Sbjct: 114 DAG 116


>gi|38202237 transcription factor 21 [Homo sapiens]
          Length = 179

 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 82  QRQSASEREKLRMRTLARALHELRRFLPPSLAPAGQSLTKIETLRLAIRYIGHLSAVL 139
           QR +A+ RE+ RMR L++A   L+  LP    P    L+K++TLRLA  YI HL  +L
Sbjct: 80  QRNAANARERARMRVLSKAFSRLKTTLP--WVPPDTKLSKLDTLRLASSYIAHLRQIL 135


>gi|38202239 transcription factor 21 [Homo sapiens]
          Length = 179

 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 82  QRQSASEREKLRMRTLARALHELRRFLPPSLAPAGQSLTKIETLRLAIRYIGHLSAVL 139
           QR +A+ RE+ RMR L++A   L+  LP    P    L+K++TLRLA  YI HL  +L
Sbjct: 80  QRNAANARERARMRVLSKAFSRLKTTLP--WVPPDTKLSKLDTLRLASSYIAHLRQIL 135


>gi|31077092 neurogenin 2 [Homo sapiens]
          Length = 272

 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 36/91 (39%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 53  QPQPPSCSSRAAEAAATTPRRARTGPAGGQRQSASEREKLRMRTLARALHELRRFLPPSL 112
           +P      SR A+ A T  R  +T     +R  A+ RE+ RM  L  AL  LR  LP   
Sbjct: 89  RPSRARAVSRGAKTAETVQRIKKT-----RRLKANNRERNRMHNLNAALDALREVLPTF- 142

Query: 113 APAGQSLTKIETLRLAIRYIGHLSAVLGLSE 143
            P    LTKIETLR A  YI  L+  L L++
Sbjct: 143 -PEDAKLTKIETLRFAHNYIWALTETLRLAD 172


>gi|38455396 neurogenin 1 [Homo sapiens]
          Length = 237

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 44/120 (36%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 64  AEAAATTPRRARTGPAGGQRQSASEREKLRMRTLARALHELRRFLPPSLAPAGQSLTKIE 123
           +EA   + RR+R       R  A++RE+ RM  L  AL  LR  LP    P    LTKIE
Sbjct: 82  SEALLHSLRRSR-------RVKANDRERNRMHNLNAALDALRSVLPSF--PDDTKLTKIE 132

Query: 124 TLRLAIRYIGHLSAVLGLSEESLQCRRRQRGDAGSPWGCPLCPDRGPAEAQTQAEGQGQG 183
           TLR A  YI  L+  L L+++ L      R     P   P  P  GP    + AE  G G
Sbjct: 133 TLRFAYNYIWALAETLRLADQGLP-GGGARERLLPPQCVPCLP--GPPSPASDAESWGSG 189


>gi|4505299 myogenic factor 6 [Homo sapiens]
          Length = 242

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 8/111 (7%)

Query: 29  DSTSPASSSDSSGSCPCDGARGLPQPQPPSCSSRAAEAAATTPRRARTGPAGGQRQSASE 88
           D   P + SDSSG    +     P  QPP C  +    A  T +R ++ P   +R++A+ 
Sbjct: 46  DQMPPEAGSDSSGE---EHVLAPPGLQPPHCPGQCLIWACKTCKR-KSAPTD-RRKAATL 100

Query: 89  REKLRMRTLARALHELRRFLPPSLAPAGQSLTKIETLRLAIRYIGHLSAVL 139
           RE+ R++ +  A   L+R    ++A   Q L K+E LR AI YI  L  +L
Sbjct: 101 RERRRLKKINEAFEALKR---RTVANPNQRLPKVEILRSAISYIERLQDLL 148


>gi|116805332 musculin [Homo sapiens]
          Length = 206

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 2/58 (3%)

Query: 82  QRQSASEREKLRMRTLARALHELRRFLPPSLAPAGQSLTKIETLRLAIRYIGHLSAVL 139
           QR +A+ RE+ RMR L++A   L+  LP    P    L+K++TLRLA  YI HL  +L
Sbjct: 108 QRNAANARERARMRVLSKAFSRLKTSLP--WVPPDTKLSKLDTLRLASSYIAHLRQLL 163


>gi|239743072 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 837

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 51/198 (25%), Positives = 69/198 (34%), Gaps = 30/198 (15%)

Query: 150 RRQRGDAG---SPWGCPLCPDRGPAEAQTQAEGQGQG------QGQGQGQGQGQGQGQGQ 200
           +R RG  G    PW   L    GP  A+   +  G         G+ +G   G   G G 
Sbjct: 569 QRPRGAGGRLQDPWPASLAL-AGPGIARLGCDLDGPRALVEGLHGRHEGGPLGGAGGGGS 627

Query: 201 GQGQGRRPGLVSAVLAEASWGSPSACPGAQAAPERLGRGVHDTDPWATPPYCPKIQSPPY 260
           G+GQGR PG  S V    S  +PS+C  A  AP R         P +  P    + +   
Sbjct: 628 GEGQGRGPG--SRVSVRRSSRAPSSCRAASLAPPRPASATSAGSPTSPAPPLHMVSTDGC 685

Query: 261 SSQGTTSDAS--------------LWTPPQGCPWTQSSPEPRNPPVPWTAAPATLELAAV 306
           S+     D++               W P     W +S+     P  P  ++P        
Sbjct: 686 SAAFLVLDSARKGDRRSARRGGPRSWRPSARASWVRST----TPRGPEASSPRARGSFLP 741

Query: 307 YQGLSVSPEPCLSLGAPS 324
             G    P P  SL  PS
Sbjct: 742 KSGGGSPPRPARSLAGPS 759


>gi|239508718 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 837

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 51/198 (25%), Positives = 69/198 (34%), Gaps = 30/198 (15%)

Query: 150 RRQRGDAG---SPWGCPLCPDRGPAEAQTQAEGQGQG------QGQGQGQGQGQGQGQGQ 200
           +R RG  G    PW   L    GP  A+   +  G         G+ +G   G   G G 
Sbjct: 569 QRPRGAGGRLQDPWPASLAL-AGPGIARLGCDLDGPRALVEGLHGRHEGGPLGGAGGGGS 627

Query: 201 GQGQGRRPGLVSAVLAEASWGSPSACPGAQAAPERLGRGVHDTDPWATPPYCPKIQSPPY 260
           G+GQGR PG  S V    S  +PS+C  A  AP R         P +  P    + +   
Sbjct: 628 GEGQGRGPG--SRVSVRRSSRAPSSCRAASLAPPRPASATSAGSPTSPAPPLHMVSTDGC 685

Query: 261 SSQGTTSDAS--------------LWTPPQGCPWTQSSPEPRNPPVPWTAAPATLELAAV 306
           S+     D++               W P     W +S+     P  P  ++P        
Sbjct: 686 SAAFLVLDSARKGDRRSARRGGPRSWRPSARASWVRST----TPRGPEASSPRARGSFLP 741

Query: 307 YQGLSVSPEPCLSLGAPS 324
             G    P P  SL  PS
Sbjct: 742 KSGGGSPPRPARSLAGPS 759


>gi|161484632 nescient helix loop helix 2 [Homo sapiens]
          Length = 135

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 20/133 (15%)

Query: 7   PQSLLGHDHWIFAQGWGWAGHWDSTSPASSSDSSGSCPCDGARGLPQPQPPSCSSRAAEA 66
           P+SL G D  +        G      P   ++  G     G+R    P P   S      
Sbjct: 21  PESLGGTDTKVL-------GSVSDLEPVEEAEGDGK---GGSRAALYPHPQQLSREE--- 67

Query: 67  AATTPRRARTGPAGGQRQSASEREKLRMRTLARALHELRRFLPPSLAPAGQSLTKIETLR 126
                +R R       R + + RE++R+     A  ELR+ LP    P  + L+KIE LR
Sbjct: 68  -----KRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPT--LPPDKKLSKIEILR 120

Query: 127 LAIRYIGHLSAVL 139
           LAI YI +L+ VL
Sbjct: 121 LAICYISYLNHVL 133


>gi|5031945 nescient helix loop helix 2 [Homo sapiens]
          Length = 135

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 20/133 (15%)

Query: 7   PQSLLGHDHWIFAQGWGWAGHWDSTSPASSSDSSGSCPCDGARGLPQPQPPSCSSRAAEA 66
           P+SL G D  +        G      P   ++  G     G+R    P P   S      
Sbjct: 21  PESLGGTDTKVL-------GSVSDLEPVEEAEGDGK---GGSRAALYPHPQQLSREE--- 67

Query: 67  AATTPRRARTGPAGGQRQSASEREKLRMRTLARALHELRRFLPPSLAPAGQSLTKIETLR 126
                +R R       R + + RE++R+     A  ELR+ LP    P  + L+KIE LR
Sbjct: 68  -----KRRRRRATAKYRSAHATRERIRVEAFNLAFAELRKLLPT--LPPDKKLSKIEILR 120

Query: 127 LAIRYIGHLSAVL 139
           LAI YI +L+ VL
Sbjct: 121 LAICYISYLNHVL 133


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.131    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,706,223
Number of Sequences: 37866
Number of extensions: 1395457
Number of successful extensions: 12028
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 593
Number of HSP's that attempted gapping in prelim test: 8635
Number of HSP's gapped (non-prelim): 2666
length of query: 397
length of database: 18,247,518
effective HSP length: 104
effective length of query: 293
effective length of database: 14,309,454
effective search space: 4192670022
effective search space used: 4192670022
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.