Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CCDC68 Sequence: fasta or formatted (335aa) NCBI GI: 219689136
Description:

coiled-coil domain containing 68

Referenced in:

Coiled-Coil Proteins

Other entries for this name:
alt mRNA [335aa] coiled-coil domain containing 68
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         14           3
 C cysteine            1.2          4           2
 D aspartate           3.6         12           1
 E glutamate          11.9         40           2
 F phenylalanine       0.9          3           1
 G glycine             2.1          7           1
 H histidine           2.7          9           1
 I isoleucine          5.1         17           2
 K lysine             11.6         39           2
 L leucine            12.8         43           2
 M methionine          2.7          9           1
 N asparagine          5.4         18           2
 P proline             1.5          5           2
 Q glutamine           8.7         29           2
 R arginine            5.4         18           1
 S serine              7.8         26           2
 T threonine           6.0         20           2
 V valine              5.1         17           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 68 
CCDC68                1.000   coiled-coil domain containing 68 
GCOM1                 0.153   GRINL1A combined protein isoform 2 
GCOM1                 0.153   GRINL1A combined protein isoform 1 
GCOM1                 0.153   GRINL1A upstream protein isoform 7 
GCOM1                 0.120   GRINL1A combined protein isoform 8 
TUFT1                 0.074   tuftelin 1 isoform 2 
TUFT1                 0.074   tuftelin 1 isoform 1 
CENPF                 0.069   centromere protein F 
CCDC88A               0.065   coiled-coil domain containing 88A isoform 1 
GOLGA4                0.065   golgi autoantigen, golgin subfamily a, 4 
KTN1                  0.063   kinectin 1 isoform b 
CENPE                 0.060   centromere protein E 
MYH9                  0.060   myosin, heavy polypeptide 9, non-muscle 
KTN1                  0.058   kinectin 1 isoform a 
KTN1                  0.058   kinectin 1 isoform a 
DST                   0.058   dystonin isoform 1e precursor 
RAD50                 0.057   RAD50 homolog isoform 2 
RAD50                 0.057   RAD50 homolog isoform 1 
HOOK1                 0.057   hook homolog 1 
EEA1                  0.055   early endosome antigen 1, 162kD 
MYH15                 0.055   myosin, heavy polypeptide 15 
MYH11                 0.055   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.055   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.055   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.055   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
CCDC18                0.055   sarcoma antigen NY-SAR-41 
ODF2L                 0.055   outer dense fiber of sperm tails 2-like isoform b [H...
ODF2L                 0.055   outer dense fiber of sperm tails 2-like isoform a [H...
DSP                   0.055   desmoplakin isoform I 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press