Search of human proteins with 8923710

Search of human proteins with 8923710

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|8923710 carnitine deficiency-associated gene expressed in
ventricle 3 isoform b [Homo sapiens]
         (258 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|8923710 carnitine deficiency-associated gene expressed in ven...   521   e-148
gi|197313672 carnitine deficiency-associated gene expressed in v...   422   e-118
gi|197313674 carnitine deficiency-associated gene expressed in v...   227   9e-60
gi|7706435 headcase [Homo sapiens]                                     52   4e-07
gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]        48   7e-06
gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homol...    47   2e-05
gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolo...    47   2e-05
gi|166795264 AE binding protein 2 isoform b [Homo sapiens]             46   3e-05
gi|166795262 AE binding protein 2 isoform a [Homo sapiens]             46   3e-05
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ...    46   4e-05
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ...    46   4e-05
gi|48762934 alpha 2 type I collagen [Homo sapiens]                     45   6e-05
gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens]     45   6e-05
gi|5453936 POU class 3 homeobox 3 [Homo sapiens]                       45   6e-05
gi|4507741 twist [Homo sapiens]                                        45   8e-05
gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a ...    45   8e-05
gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c ...    45   8e-05
gi|13775236 scratch [Homo sapiens]                                     45   8e-05
gi|5032007 purine-rich element binding protein A [Homo sapiens]        44   2e-04
gi|119395716 forkhead box C1 [Homo sapiens]                            43   2e-04
gi|34452713 Ca2+-dependent secretion activator isoform 2 [Homo s...    43   2e-04
gi|34452715 Ca2+-dependent secretion activator isoform 1 [Homo s...    43   2e-04
gi|34452711 Ca2+-dependent secretion activator isoform 3 [Homo s...    43   2e-04
gi|33620755 YEATS domain containing 2 [Homo sapiens]                   43   2e-04
gi|238859557 regulatory factor X1 [Homo sapiens]                       43   3e-04
gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens]            43   3e-04
gi|23510368 homeobox D11 [Homo sapiens]                                42   5e-04
gi|55956899 keratin 9 [Homo sapiens]                                   42   5e-04
gi|239757043 PREDICTED: functional smad suppressing element 18 [...    42   5e-04
gi|239751555 PREDICTED: functional smad suppressing element 18 [...    42   5e-04

>gi|8923710 carnitine deficiency-associated gene expressed in
           ventricle 3 isoform b [Homo sapiens]
          Length = 258

 Score =  521 bits (1341), Expect = e-148
 Identities = 258/258 (100%), Positives = 258/258 (100%)

Query: 1   MAETEERSLDNFFAKRDKKKKKERSNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGD 60
           MAETEERSLDNFFAKRDKKKKKERSNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGD
Sbjct: 1   MAETEERSLDNFFAKRDKKKKKERSNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGD 60

Query: 61  GGTASAGAAGPGAATKAVTKDEDEWKELEQKEVDYSGLRVQAMQISSEKEEDDNEKRQDP 120
           GGTASAGAAGPGAATKAVTKDEDEWKELEQKEVDYSGLRVQAMQISSEKEEDDNEKRQDP
Sbjct: 61  GGTASAGAAGPGAATKAVTKDEDEWKELEQKEVDYSGLRVQAMQISSEKEEDDNEKRQDP 120

Query: 121 GDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTSGVYRPPGARLTTTR 180
           GDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTSGVYRPPGARLTTTR
Sbjct: 121 GDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTSGVYRPPGARLTTTR 180

Query: 181 KTPQGPPEIYSDTQFPSLQSTAKHVESRKDKEMEKSFEVVRHKNRGRDEVSKNQALKLQL 240
           KTPQGPPEIYSDTQFPSLQSTAKHVESRKDKEMEKSFEVVRHKNRGRDEVSKNQALKLQL
Sbjct: 181 KTPQGPPEIYSDTQFPSLQSTAKHVESRKDKEMEKSFEVVRHKNRGRDEVSKNQALKLQL 240

Query: 241 DNQYAVLENQKSSHSQYN 258
           DNQYAVLENQKSSHSQYN
Sbjct: 241 DNQYAVLENQKSSHSQYN 258


>gi|197313672 carnitine deficiency-associated gene expressed in
           ventricle 3 isoform a [Homo sapiens]
          Length = 213

 Score =  422 bits (1086), Expect = e-118
 Identities = 208/208 (100%), Positives = 208/208 (100%)

Query: 1   MAETEERSLDNFFAKRDKKKKKERSNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGD 60
           MAETEERSLDNFFAKRDKKKKKERSNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGD
Sbjct: 1   MAETEERSLDNFFAKRDKKKKKERSNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGD 60

Query: 61  GGTASAGAAGPGAATKAVTKDEDEWKELEQKEVDYSGLRVQAMQISSEKEEDDNEKRQDP 120
           GGTASAGAAGPGAATKAVTKDEDEWKELEQKEVDYSGLRVQAMQISSEKEEDDNEKRQDP
Sbjct: 61  GGTASAGAAGPGAATKAVTKDEDEWKELEQKEVDYSGLRVQAMQISSEKEEDDNEKRQDP 120

Query: 121 GDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTSGVYRPPGARLTTTR 180
           GDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTSGVYRPPGARLTTTR
Sbjct: 121 GDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEPAMTSGVYRPPGARLTTTR 180

Query: 181 KTPQGPPEIYSDTQFPSLQSTAKHVESR 208
           KTPQGPPEIYSDTQFPSLQSTAKHVESR
Sbjct: 181 KTPQGPPEIYSDTQFPSLQSTAKHVESR 208


>gi|197313674 carnitine deficiency-associated gene expressed in
           ventricle 3 isoform c [Homo sapiens]
          Length = 110

 Score =  227 bits (578), Expect = 9e-60
 Identities = 107/107 (100%), Positives = 107/107 (100%)

Query: 103 MQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEP 162
           MQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEP
Sbjct: 1   MQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPEP 60

Query: 163 AMTSGVYRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHVESRK 209
           AMTSGVYRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHVESRK
Sbjct: 61  AMTSGVYRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHVESRK 107


>gi|7706435 headcase [Homo sapiens]
          Length = 543

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 31/57 (54%), Positives = 36/57 (63%), Gaps = 1/57 (1%)

Query: 21 KKERSNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKA 77
          ++E    A +AAGAAG+A G + AA AAG GA A   PG GG A AG AG GAA  A
Sbjct: 22 EQENGAGALAAAGAAGAAAGGALAA-AAGCGAAAAGAPGAGGAAGAGGAGTGAANAA 77



 Score = 39.3 bits (90), Expect = 0.003
 Identities = 20/42 (47%), Positives = 22/42 (52%)

Query: 28 AASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAA 69
          AA    AA  A G+ GAAGA G G GA       G A+AG A
Sbjct: 47 AAGCGAAAAGAPGAGGAAGAGGAGTGAANAAAAAGAAAAGDA 88



 Score = 37.4 bits (85), Expect = 0.013
 Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 29 ASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAA 74
          A+AAG   +A G+ GA GAAG   GAGT   +   A+AGAA  G A
Sbjct: 45 AAAAGCGAAAAGAPGAGGAAGA-GGAGTGAAN-AAAAAGAAAAGDA 88



 Score = 32.0 bits (71), Expect = 0.55
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 28  AASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAAT--KAVTKDEDEW 85
           AA A GA G+AG      GAA   A AG          A  A P   +  + V  ++D++
Sbjct: 54  AAGAPGAGGAAGAGGAGTGAANAAAAAGAAAAGDAKNEAPCATPLICSFGRPVDLEKDDY 113

Query: 86  KEL 88
           +++
Sbjct: 114 QKV 116


>gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]
          Length = 1215

 Score = 48.1 bits (113), Expect = 7e-06
 Identities = 45/152 (29%), Positives = 60/152 (39%), Gaps = 39/152 (25%)

Query: 25  SNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGD--GGTASAGAAGPGAATKAVTKDE 82
           + R     G  G  GGSSG  G AGGG  +  RPG   GG A+A A G GAA   +   +
Sbjct: 11  AKRLCCRPGGGGGGGGSSGGGGGAGGGYSSACRPGPRAGGAAAAAACGGGAALGLLPPGK 70

Query: 83  DEWKELEQKEVDYSGLRV------QAMQISSEKEEDDNEKR------------------- 117
            +  E     +D +  RV      Q ++   E+  +  ++R                   
Sbjct: 71  TQSPE---SLLDIAARRVAEKWPFQRVEERFERIPEPVQRRIVYWSFPRSEREICMYSSF 127

Query: 118 -------QDPGDNWEEGG--GGGGGMEKSSGP 140
                    PGD+   GG  GGGGG   SS P
Sbjct: 128 NTGGGAAGGPGDDSGGGGGAGGGGGGGSSSSP 159



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 19/48 (39%), Positives = 24/48 (50%)

Query: 30  SAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKA 77
           +  GAAG  G  SG  G AGGG G G+      T++A  +   AA  A
Sbjct: 129 TGGGAAGGPGDDSGGGGGAGGGGGGGSSSSPAATSAAATSAAAAAAAA 176



 Score = 38.1 bits (87), Expect = 0.008
 Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 21  KKERSNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKA 77
           + ER     S+    G A G  G     GGGAG G   G GG++S+ AA   AAT A
Sbjct: 116 RSEREICMYSSFNTGGGAAGGPGDDSGGGGGAGGG---GGGGSSSSPAATSAAATSA 169



 Score = 37.0 bits (84), Expect = 0.017
 Identities = 18/52 (34%), Positives = 22/52 (42%)

Query: 26  NRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKA 77
           N    AAG  G   G  G AG  GGG  + +       A++ AA   AA  A
Sbjct: 128 NTGGGAAGGPGDDSGGGGGAGGGGGGGSSSSPAATSAAATSAAAAAAAAAAA 179



 Score = 32.0 bits (71), Expect = 0.55
 Identities = 16/24 (66%), Positives = 18/24 (75%)

Query: 28  AASAAGAAGSAGGSSGAAGAAGGG 51
           AA+AA AAG+   S GAAGAA GG
Sbjct: 177 AAAAAAAAGAGAPSVGAAGAADGG 200



 Score = 28.1 bits (61), Expect = 7.9
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 25  SNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGG 62
           S  A SAA AA +A  ++ AA  AG  +       DGG
Sbjct: 163 SAAATSAAAAAAAAAAAAAAAAGAGAPSVGAAGAADGG 200


>gi|73427806 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
           isoform b [Homo sapiens]
          Length = 373

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 27/49 (55%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 29  ASAAGAAGSAGGSSGAAGAAGGGAGA---GTRPGDGGTASAGAAGPGAA 74
           A A GAAGSA  S+G AG AGGG  A   G   G GG    GAAG G A
Sbjct: 197 AGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGA 245



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 28  AASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKAVTKDEDEWKE 87
           AA++AG AG AGG  G A A GGG G G   G G   + GA  P  A   +  D D + +
Sbjct: 206 AAASAGGAGGAGGG-GPASAGGGGGGGGGGGGGGAAGAGGALHPHHAAGGLHFD-DRFSD 263

Query: 88  LEQKEVDYSGLRVQAMQISSEKEEDDNEKRQ 118
            +   +    L  Q   +S E+     +KR+
Sbjct: 264 EQLVTMSVRELNRQLRGVSKEEVIRLKQKRR 294



 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 20/46 (43%), Positives = 24/46 (52%)

Query: 32  AGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKA 77
           AGA G+AG ++ +AG AGG  G G     GG    G  G G A  A
Sbjct: 197 AGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAAGA 242



 Score = 28.1 bits (61), Expect = 7.9
 Identities = 25/77 (32%), Positives = 28/77 (36%), Gaps = 30/77 (38%)

Query: 28  AASAAGAAGSAGGSSG-------------AAGAAGGGAG-----------------AGTR 57
           AA+ AGA  S GGS               AA AA  GAG                     
Sbjct: 140 AAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPTAGA 199

Query: 58  PGDGGTASAGAAGPGAA 74
           PG  G+A+A A G G A
Sbjct: 200 PGAAGSAAASAGGAGGA 216


>gi|5453736 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
           isoform a [Homo sapiens]
          Length = 403

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 27/49 (55%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 29  ASAAGAAGSAGGSSGAAGAAGGGAGA---GTRPGDGGTASAGAAGPGAA 74
           A A GAAGSA  S+G AG AGGG  A   G   G GG    GAAG G A
Sbjct: 197 AGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAAGAGGA 245



 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 28  AASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKAVTKDEDEWKE 87
           AA++AG AG AGG  G A A GGG G G   G G   + GA  P  A   +  D D + +
Sbjct: 206 AAASAGGAGGAGGG-GPASAGGGGGGGGGGGGGGAAGAGGALHPHHAAGGLHFD-DRFSD 263

Query: 88  LEQKEVDYSGLRVQAMQISSEKEEDDNEKRQ 118
            +   +    L  Q   +S E+     +KR+
Sbjct: 264 EQLVTMSVRELNRQLRGVSKEEVIRLKQKRR 294



 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 20/46 (43%), Positives = 24/46 (52%)

Query: 32  AGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKA 77
           AGA G+AG ++ +AG AGG  G G     GG    G  G G A  A
Sbjct: 197 AGAPGAAGSAAASAGGAGGAGGGGPASAGGGGGGGGGGGGGGAAGA 242



 Score = 28.1 bits (61), Expect = 7.9
 Identities = 25/77 (32%), Positives = 28/77 (36%), Gaps = 30/77 (38%)

Query: 28  AASAAGAAGSAGGSSG-------------AAGAAGGGAG-----------------AGTR 57
           AA+ AGA  S GGS               AA AA  GAG                     
Sbjct: 140 AAAGAGAGASLGGSGEEMGPAAAVVSAVIAAAAAQSGAGPHYHHHHHHAAGHHHHPTAGA 199

Query: 58  PGDGGTASAGAAGPGAA 74
           PG  G+A+A A G G A
Sbjct: 200 PGAAGSAAASAGGAGGA 216


>gi|166795264 AE binding protein 2 isoform b [Homo sapiens]
          Length = 517

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 14/134 (10%)

Query: 15  KRDKKKKKERSNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAA 74
           + ++++++E     A A  A    GGS G  G  GGG G G         +     P +A
Sbjct: 37  EEEEEEEEEEEEAEAEAVAALLLNGGSGGGGGGGGGGVGGGE------AETMSEPSPESA 90

Query: 75  TKA-VTKDEDEWKELEQKEVDYSG-----LRVQAMQISSEKEEDDNEKRQDPGDNWEEGG 128
           ++A   +DE+E  E E+ E   SG        +++  SS     D  +   PG      G
Sbjct: 91  SQAGEDEDEEEDDEEEEDESSSSGGGEEESSAESLVGSSGGSSSDETRSLSPGAASSSSG 150

Query: 129 GGGG--GMEKSSGP 140
            G G  G+E+  GP
Sbjct: 151 DGDGKEGLEEPKGP 164



 Score = 28.5 bits (62), Expect = 6.1
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 10/80 (12%)

Query: 5   EERSLDNFFAKRDKKKKKERSNRAASAAGAAGSAG----------GSSGAAGAAGGGAGA 54
           EE S ++           E  + +  AA ++   G          G  G+ G  GGG+ +
Sbjct: 118 EESSAESLVGSSGGSSSDETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGGGGGGSSS 177

Query: 55  GTRPGDGGTASAGAAGPGAA 74
            +    GG    G  G G++
Sbjct: 178 SSVVSSGGDEGYGTGGGGSS 197



 Score = 28.1 bits (61), Expect = 7.9
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 30/104 (28%)

Query: 58  PGDGGTASAGAAGPGAATKAVTKDEDEWKELEQKEVDYSGLRVQAMQISSEKEEDDNEKR 117
           PG  G+A+ G A P         +E+E +E E++E +   +    +              
Sbjct: 22  PGSPGSAARGRAEP--------PEEEEEEEEEEEEAEAEAVAALLL-------------- 59

Query: 118 QDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPE 161
                N   GGGGGGG     G     A   + P+P   ++  E
Sbjct: 60  -----NGGSGGGGGGG---GGGVGGGEAETMSEPSPESASQAGE 95



 Score = 28.1 bits (61), Expect = 7.9
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 22  KERSNRAASAAGAAGSAGG--SSGAAGAAGGGAGAGTRPGDGGTASAGAAG 70
           KE         G+ G  GG  SS +  ++GG  G GT  G     S G  G
Sbjct: 155 KEGLEEPKGPRGSQGGGGGGSSSSSVVSSGGDEGYGTGGGGSSATSGGRRG 205


>gi|166795262 AE binding protein 2 isoform a [Homo sapiens]
          Length = 503

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 14/134 (10%)

Query: 15  KRDKKKKKERSNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAA 74
           + ++++++E     A A  A    GGS G  G  GGG G G         +     P +A
Sbjct: 37  EEEEEEEEEEEEAEAEAVAALLLNGGSGGGGGGGGGGVGGGE------AETMSEPSPESA 90

Query: 75  TKA-VTKDEDEWKELEQKEVDYSG-----LRVQAMQISSEKEEDDNEKRQDPGDNWEEGG 128
           ++A   +DE+E  E E+ E   SG        +++  SS     D  +   PG      G
Sbjct: 91  SQAGEDEDEEEDDEEEEDESSSSGGGEEESSAESLVGSSGGSSSDETRSLSPGAASSSSG 150

Query: 129 GGGG--GMEKSSGP 140
            G G  G+E+  GP
Sbjct: 151 DGDGKEGLEEPKGP 164



 Score = 28.5 bits (62), Expect = 6.1
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 10/80 (12%)

Query: 5   EERSLDNFFAKRDKKKKKERSNRAASAAGAAGSAG----------GSSGAAGAAGGGAGA 54
           EE S ++           E  + +  AA ++   G          G  G+ G  GGG+ +
Sbjct: 118 EESSAESLVGSSGGSSSDETRSLSPGAASSSSGDGDGKEGLEEPKGPRGSQGGGGGGSSS 177

Query: 55  GTRPGDGGTASAGAAGPGAA 74
            +    GG    G  G G++
Sbjct: 178 SSVVSSGGDEGYGTGGGGSS 197



 Score = 28.1 bits (61), Expect = 7.9
 Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 30/104 (28%)

Query: 58  PGDGGTASAGAAGPGAATKAVTKDEDEWKELEQKEVDYSGLRVQAMQISSEKEEDDNEKR 117
           PG  G+A+ G A P         +E+E +E E++E +   +    +              
Sbjct: 22  PGSPGSAARGRAEP--------PEEEEEEEEEEEEAEAEAVAALLL-------------- 59

Query: 118 QDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVIVTETPE 161
                N   GGGGGGG     G     A   + P+P   ++  E
Sbjct: 60  -----NGGSGGGGGGG---GGGVGGGEAETMSEPSPESASQAGE 95



 Score = 28.1 bits (61), Expect = 7.9
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 22  KERSNRAASAAGAAGSAGG--SSGAAGAAGGGAGAGTRPGDGGTASAGAAG 70
           KE         G+ G  GG  SS +  ++GG  G GT  G     S G  G
Sbjct: 155 KEGLEEPKGPRGSQGGGGGGSSSSSVVSSGGDEGYGTGGGGSSATSGGRRG 205


>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
          [Homo sapiens]
          Length = 336

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 28/67 (41%), Positives = 31/67 (46%), Gaps = 8/67 (11%)

Query: 28 AASAAGAAGSAG--------GSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKAVT 79
          AA+ A   GSAG         + GAA AAG GAG G     GGT    A   GA   A  
Sbjct: 13 AAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASK 72

Query: 80 KDEDEWK 86
           +EDE K
Sbjct: 73 NEEDEGK 79


>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
          [Homo sapiens]
          Length = 287

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 28/67 (41%), Positives = 31/67 (46%), Gaps = 8/67 (11%)

Query: 28 AASAAGAAGSAG--------GSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKAVT 79
          AA+ A   GSAG         + GAA AAG GAG G     GGT    A   GA   A  
Sbjct: 13 AAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASK 72

Query: 80 KDEDEWK 86
           +EDE K
Sbjct: 73 NEEDEGK 79


>gi|48762934 alpha 2 type I collagen [Homo sapiens]
          Length = 1366

 Score = 45.1 bits (105), Expect = 6e-05
 Identities = 49/166 (29%), Positives = 62/166 (37%), Gaps = 27/166 (16%)

Query: 22  KERSNRAASAAGAAGSAG--GSSGAAGAAGGGAGAGTRPGDGGTASAGAAGP-------G 72
           ++ +  A  A GA G AG  G  G AGAAG    AG R   G     G AGP       G
Sbjct: 671 RDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAG 730

Query: 73  AATKAVTKDEDEWKELEQKEVDYSGLRVQAMQISSEKEEDDNEKRQDPGDNWEEGGGGGG 132
           AA +   K E   K  + +    +G+      + +      N     PG     G GG  
Sbjct: 731 AAGQPGAKGERGAKGPKGE----NGVVGPTGPVGAAGPAGPN---GPPGPAGSRGDGGPP 783

Query: 133 GMEKSSGPWNKTAP-----VQAPPAPVIVTETPEPAMTSGVYRPPG 173
           GM    G   +T P     +  PP P      P PA   G+  P G
Sbjct: 784 GMTGFPGAAGRTGPPGPSGISGPPGP------PGPAGKEGLRGPRG 823



 Score = 35.8 bits (81), Expect = 0.038
 Identities = 43/157 (27%), Positives = 57/157 (36%), Gaps = 32/157 (20%)

Query: 38  AGGSSGAAGAAG--GGAGAGTRPGDGGTASAGAAGPGAATKAVTKDEDEWKELEQKEVDY 95
           A G +GA GAAG  G AGA   PG  G    G  G   AT                    
Sbjct: 302 ANGLTGAKGAAGLPGVAGAPGLPGPRGI--PGPVGAAGAT-------------------- 339

Query: 96  SGLRVQAMQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPAPVI 155
            G R    +      + ++  + +PG    +G  G  G E   GP N  A    PP P  
Sbjct: 340 -GARGLVGEPGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGP-NGEAGSAGPPGPPG 397

Query: 156 VTETPEPA------MTSGVYRPPGARLTTTRKTPQGP 186
           +  +P           +GV  PPG+R  +     +GP
Sbjct: 398 LRGSPGSRGLPGADGRAGVMGPPGSRGASGPAGVRGP 434



 Score = 33.1 bits (74), Expect = 0.25
 Identities = 45/157 (28%), Positives = 50/157 (31%), Gaps = 21/157 (13%)

Query: 33  GAAGSAG--GSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKAVTKDEDEWKELEQ 90
           G  G  G  G  GA GA G     G     G    AGAAGP                 E+
Sbjct: 661 GLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPA------GPRGSPGER 714

Query: 91  KEVDYSGLRVQAMQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAP 150
            EV  +G    A    +  +         PG   E G  G  G     GP   T PV A 
Sbjct: 715 GEVGPAGPNGFAGPAGAAGQ---------PGAKGERGAKGPKGENGVVGP---TGPVGA- 761

Query: 151 PAPVIVTETPEPAMTSGVYRPPGARLTTTRKTPQGPP 187
             P      P PA + G   PPG           GPP
Sbjct: 762 AGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPP 798



 Score = 31.6 bits (70), Expect = 0.72
 Identities = 40/155 (25%), Positives = 50/155 (32%), Gaps = 14/155 (9%)

Query: 33   GAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKAVTKDEDEWKELEQKE 92
            GAAG A G  G  G AG     G     G    AGA GP   +       D+ +  E+  
Sbjct: 958  GAAG-APGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGIRGDKGEPGEKGP 1016

Query: 93   VDYSGLRVQAMQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAPVQAPPA 152
                GL+              N  +  PG     G  G  G    +GP     P   P  
Sbjct: 1017 RGLPGLK------------GHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGP-SGPAG 1063

Query: 153  PVIVTETPEPAMTSGVYRPPGARLTTTRKTPQGPP 187
                T  P     +G+  P G +       P GPP
Sbjct: 1064 KDGRTGHPGTVGPAGIRGPQGHQGPAGPPGPPGPP 1098



 Score = 30.4 bits (67), Expect = 1.6
 Identities = 40/161 (24%), Positives = 54/161 (33%), Gaps = 9/161 (5%)

Query: 29  ASAAGAAGSAG--GSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKAVTKDEDEWK 86
           A + G +G+ G  GS+G  G  G     G R  +G   SAG  GP     +         
Sbjct: 351 AGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGA 410

Query: 87  ELEQKEVDYSGLRVQAMQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKTAP 146
           +     +   G R  +          D  +  +PG     G  G  G   + GP  K  P
Sbjct: 411 DGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPG---NIGPAGKEGP 467

Query: 147 VQAPPAPVIVTETPEPAMTSGVYRPPGARLTTTRKTPQGPP 187
           V  P     +   P P   +G    PG       K P G P
Sbjct: 468 VGLPG----IDGRPGPIGPAGARGEPGNIGFPGPKGPTGDP 504



 Score = 29.6 bits (65), Expect = 2.7
 Identities = 37/135 (27%), Positives = 49/135 (36%), Gaps = 21/135 (15%)

Query: 33  GAAGSAG--GSSGAAGAAG-----GGAGAGTRPGDGG-------TASAGAAGPGAATKAV 78
           GA G AG  G  G+ GA+G     G  G   RPG+ G         S G  GP      V
Sbjct: 409 GADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPV 468

Query: 79  TKDEDEWKELEQKEVDYSGLRVQAMQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSS 138
                + +      +  +G R +   I     +       DPG N ++G  G  G   + 
Sbjct: 469 GLPGIDGR---PGPIGPAGARGEPGNIGFPGPKGPT---GDPGKNGDKGHAGLAGARGAP 522

Query: 139 GPWNKTAPVQAPPAP 153
           GP       Q PP P
Sbjct: 523 GPDGNNG-AQGPPGP 536



 Score = 29.3 bits (64), Expect = 3.6
 Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 2/41 (4%)

Query: 33  GAAGSAG--GSSGAAGAAGGGAGAGTRPGDGGTASAGAAGP 71
           G  G  G  G  G  G  G    AG R  DG     G AGP
Sbjct: 208 GTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGP 248



 Score = 28.9 bits (63), Expect = 4.6
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 5/48 (10%)

Query: 29  ASAAGAAGSAG-----GSSGAAGAAGGGAGAGTRPGDGGTASAGAAGP 71
           A A G+ GS G     G  G+AG  G     G +   G   +AG AGP
Sbjct: 231 AGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGP 278



 Score = 28.5 bits (62), Expect = 6.1
 Identities = 18/35 (51%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 40  GSSGAAGAAG--GGAGAGTRPGDGG-TASAGAAGP 71
           G  GAAGA G  G  G    PG+ G T  AGA GP
Sbjct: 100 GPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGP 134


>gi|22547197 zinc finger protein of the cerebellum 2 [Homo sapiens]
          Length = 532

 Score = 45.1 bits (105), Expect = 6e-05
 Identities = 19/58 (32%), Positives = 28/58 (48%)

Query: 28  AASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKAVTKDEDEW 85
           A    G +GS G   G+ G +G G G G   G GG +S G +G       ++ + +EW
Sbjct: 473 AVHRGGGSGSGGAGGGSGGGSGSGGGGGGAGGGGGGSSGGGSGTAGGHSGLSSNFNEW 530



 Score = 31.2 bits (69), Expect = 0.93
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 7/53 (13%)

Query: 28  AASAAGAAGSAGGSSGAAGAA------GGGAGA-GTRPGDGGTASAGAAGPGA 73
           +++ + AA +A  ++ AA AA      GGG+G+ G   G GG + +G  G GA
Sbjct: 450 SSNLSPAAAAAAAAAAAAAAAVSAVHRGGGSGSGGAGGGSGGGSGSGGGGGGA 502


>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
          Length = 500

 Score = 45.1 bits (105), Expect = 6e-05
 Identities = 20/53 (37%), Positives = 24/53 (45%)

Query: 29 ASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKAVTKD 81
          + AAGA G  GG  G  G   GG G G +PG     S    G  ++ K V  D
Sbjct: 24 SDAAGAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTSGAYRGDPSSVKMVQSD 76



 Score = 31.2 bits (69), Expect = 0.93
 Identities = 15/44 (34%), Positives = 18/44 (40%)

Query: 26 NRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAA 69
          N   +A     S    +G  G  GGG G G   G GG    G+A
Sbjct: 13 NSLLAAGSIVHSDAAGAGGGGGGGGGGGGGGAGGGGGGMQPGSA 56



 Score = 30.8 bits (68), Expect = 1.2
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 34 AAGSAGGSSGA-AGAAGGGAGAGTRPGDGGTASAGAAGPGAATKAVTKDEDEWKELEQKE 92
          AAGS   S  A AG  GGG G G   G GG       G  A T    + +    ++ Q +
Sbjct: 17 AAGSIVHSDAAGAGGGGGGGGGGGGGGAGGGGGGMQPGSAAVTSGAYRGDPSSVKMVQSD 76


>gi|4507741 twist [Homo sapiens]
          Length = 202

 Score = 44.7 bits (104), Expect = 8e-05
 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 10/96 (10%)

Query: 8   SLDNFFAKRDKKKKKERSNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPG-------- 59
           SL N   + D+++             +  SAGG +G  GAAGGG G G  PG        
Sbjct: 16  SLSNSEEEPDRQQPPSGKRGGRKRRSSRRSAGGGAGPGGAAGGGVGGGDEPGSPAQGKRG 75

Query: 60  --DGGTASAGAAGPGAATKAVTKDEDEWKELEQKEV 93
               G    G AG G  + +       ++EL+ + V
Sbjct: 76  KKSAGCGGGGGAGGGGGSSSGGGSPQSYEELQTQRV 111


>gi|14110420 heterogeneous nuclear ribonucleoprotein D isoform a
          [Homo sapiens]
          Length = 355

 Score = 44.7 bits (104), Expect = 8e-05
 Identities = 27/65 (41%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 28 AASAAGAAGSAG--------GSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKAVT 79
          AA+ A   GSAG         + GAA AAG GAG G     GGT    A   GA   A  
Sbjct: 13 AAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASK 72

Query: 80 KDEDE 84
           +EDE
Sbjct: 73 NEEDE 77



 Score = 28.9 bits (63), Expect = 4.6
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 13/89 (14%)

Query: 33  GAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGA-AGPGAATKAVTKDEDEWKELEQK 91
           G   +A  ++   G+AG   GA      G  A+AG+ AG G  T A    E    E E  
Sbjct: 8   GDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGT-ASGGTEGGSAESEGA 66

Query: 92  EVDYSGLRVQAMQISSEKEEDDNEKRQDP 120
           ++D           +S+ EED+      P
Sbjct: 67  KID-----------ASKNEEDEGHSNSSP 84


>gi|14110414 heterogeneous nuclear ribonucleoprotein D isoform c
          [Homo sapiens]
          Length = 306

 Score = 44.7 bits (104), Expect = 8e-05
 Identities = 27/65 (41%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 28 AASAAGAAGSAG--------GSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKAVT 79
          AA+ A   GSAG         + GAA AAG GAG G     GGT    A   GA   A  
Sbjct: 13 AAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGTASGGTEGGSAESEGAKIDASK 72

Query: 80 KDEDE 84
           +EDE
Sbjct: 73 NEEDE 77



 Score = 28.9 bits (63), Expect = 4.6
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 13/89 (14%)

Query: 33  GAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGA-AGPGAATKAVTKDEDEWKELEQK 91
           G   +A  ++   G+AG   GA      G  A+AG+ AG G  T A    E    E E  
Sbjct: 8   GDGAAAAATAAVGGSAGEQEGAMVAATQGAAAAAGSGAGTGGGT-ASGGTEGGSAESEGA 66

Query: 92  EVDYSGLRVQAMQISSEKEEDDNEKRQDP 120
           ++D           +S+ EED+      P
Sbjct: 67  KID-----------ASKNEEDEGHSNSSP 84


>gi|13775236 scratch [Homo sapiens]
          Length = 348

 Score = 44.7 bits (104), Expect = 8e-05
 Identities = 33/81 (40%), Positives = 43/81 (53%), Gaps = 10/81 (12%)

Query: 2   AETEERSLDNFFAKRDKKKKKERSNRAASAAGAAGSAGGSSGAAGAAGGGAGA---GTRP 58
           A +E  + D FF   D + +++ SN  ++AA +  SA    G AG  GGGAG    G+ P
Sbjct: 107 AVSEGYAADAFFIT-DGRSRRKASNAGSAAAPSTASAAAPDGDAGG-GGGAGGRSLGSGP 164

Query: 59  GDGGTASAGA-----AGPGAA 74
           G  G   AGA     AGPGAA
Sbjct: 165 GGRGGTRAGAGTEARAGPGAA 185


>gi|5032007 purine-rich element binding protein A [Homo sapiens]
          Length = 322

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 13/83 (15%)

Query: 17 DKKKKKERSNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATK 76
          D+    E+   A  + G+ G  G  SG+ G  GGG G G   G GG A  G         
Sbjct: 3  DRDSGSEQGGAALGSGGSLGHPGSGSGSGGGGGGGGGGGGSGGGGGGAPGGL-------- 54

Query: 77 AVTKDEDEWKELEQKEVDYSGLR 99
               + E +EL  K VD    R
Sbjct: 55 -----QHETQELASKRVDIQNKR 72


>gi|119395716 forkhead box C1 [Homo sapiens]
          Length = 553

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 36/111 (32%), Positives = 42/111 (37%), Gaps = 13/111 (11%)

Query: 30  SAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKAVTKDEDEWKELE 89
           S   +AGS+GG  G AGAAGG  GAGT   +    S  AAG                 ++
Sbjct: 366 SQTSSAGSSGGGGGGAGAAGGAGGAGTYHCNLQAMSLYAAGERGGHLQGAPGGAGGSAVD 425

Query: 90  QKEVDYSGLRVQAMQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGP 140
               DYS   V +   SS                   GGGGGGG E    P
Sbjct: 426 DPLPDYSLPPVTSSSSSSLSHGGG-------------GGGGGGGQEAGHHP 463


>gi|34452713 Ca2+-dependent secretion activator isoform 2 [Homo
           sapiens]
          Length = 1314

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 33/106 (31%), Positives = 45/106 (42%), Gaps = 10/106 (9%)

Query: 5   EERSLDNFFAKRDKKKKKERSNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTA 64
           EE S            +   S  +  +AG+AG  GG +GA    G G G G+    GG A
Sbjct: 16  EEESGKEVLGSAPSGARLSPSRTSEGSAGSAGLGGGGAGAGAGVGAGGGGGSGASSGGGA 75

Query: 65  S-------AGAAGPGAATKAVTKDEDEWKELE--QKEVDYSGLRVQ 101
                   AG   P + + +V   E E +ELE  QKE +    R+Q
Sbjct: 76  GGLQPSSRAGGGRPSSPSPSVV-SEKEKEELERLQKEEEERKKRLQ 120


>gi|34452715 Ca2+-dependent secretion activator isoform 1 [Homo
           sapiens]
          Length = 1353

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 33/106 (31%), Positives = 45/106 (42%), Gaps = 10/106 (9%)

Query: 5   EERSLDNFFAKRDKKKKKERSNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTA 64
           EE S            +   S  +  +AG+AG  GG +GA    G G G G+    GG A
Sbjct: 16  EEESGKEVLGSAPSGARLSPSRTSEGSAGSAGLGGGGAGAGAGVGAGGGGGSGASSGGGA 75

Query: 65  S-------AGAAGPGAATKAVTKDEDEWKELE--QKEVDYSGLRVQ 101
                   AG   P + + +V   E E +ELE  QKE +    R+Q
Sbjct: 76  GGLQPSSRAGGGRPSSPSPSVV-SEKEKEELERLQKEEEERKKRLQ 120


>gi|34452711 Ca2+-dependent secretion activator isoform 3 [Homo
           sapiens]
          Length = 1274

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 33/106 (31%), Positives = 45/106 (42%), Gaps = 10/106 (9%)

Query: 5   EERSLDNFFAKRDKKKKKERSNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTA 64
           EE S            +   S  +  +AG+AG  GG +GA    G G G G+    GG A
Sbjct: 16  EEESGKEVLGSAPSGARLSPSRTSEGSAGSAGLGGGGAGAGAGVGAGGGGGSGASSGGGA 75

Query: 65  S-------AGAAGPGAATKAVTKDEDEWKELE--QKEVDYSGLRVQ 101
                   AG   P + + +V   E E +ELE  QKE +    R+Q
Sbjct: 76  GGLQPSSRAGGGRPSSPSPSVV-SEKEKEELERLQKEEEERKKRLQ 120


>gi|33620755 YEATS domain containing 2 [Homo sapiens]
          Length = 1422

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 8/63 (12%)

Query: 25  SNRAASAAGAAGSAGGSSGAAGAAGGGAGA-----GTRPGDGGTASAG---AAGPGAATK 76
           +N A   +G+A S G  +G  G  GGG G+     G+  G GGTA  G    AGPG  ++
Sbjct: 786 TNNANLQSGSAASGGSGAGGGGGGGGGGGSGSGGGGSTGGGGGTAGGGTQSTAGPGGISQ 845

Query: 77  AVT 79
            +T
Sbjct: 846 HLT 848



 Score = 35.0 bits (79), Expect = 0.065
 Identities = 16/44 (36%), Positives = 19/44 (43%)

Query: 27  RAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAG 70
           RA + A     +  S G+    GGG G G   G GG  S G  G
Sbjct: 784 RATNNANLQSGSAASGGSGAGGGGGGGGGGGSGSGGGGSTGGGG 827



 Score = 33.1 bits (74), Expect = 0.25
 Identities = 15/45 (33%), Positives = 20/45 (44%)

Query: 31  AAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAAT 75
           A   A    GS+ + G+  GG G G   G  G+   G+ G G  T
Sbjct: 785 ATNNANLQSGSAASGGSGAGGGGGGGGGGGSGSGGGGSTGGGGGT 829


>gi|238859557 regulatory factor X1 [Homo sapiens]
          Length = 979

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 25  SNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKAV 78
           ++  ++ AGA+ S+GG     G +GGG G G   G GG+ S G  G GA T  +
Sbjct: 367 ASSTSTGAGASNSSGG-----GGSGGGGGGGGGGGGGGSGSTGGGGSGAGTYVI 415



 Score = 35.0 bits (79), Expect = 0.065
 Identities = 17/57 (29%), Positives = 24/57 (42%)

Query: 29  ASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKAVTKDEDEW 85
           +   G  G  GG  G+    GGG+GAGT    GG     A+   + T   +    +W
Sbjct: 385 SGGGGGGGGGGGGGGSGSTGGGGSGAGTYVIQGGYMLGSASQSYSHTTRASPATVQW 441



 Score = 30.4 bits (67), Expect = 1.6
 Identities = 16/48 (33%), Positives = 19/48 (39%)

Query: 25  SNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPG 72
           S   AS+        GS   A +   GAGA    G GG+   G  G G
Sbjct: 347 SQAVASSGSMPMYVSGSQVVASSTSTGAGASNSSGGGGSGGGGGGGGG 394



 Score = 30.0 bits (66), Expect = 2.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 32  AGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGA 73
           +G+   A  +S  AGA+    G G+  G GG    G  G G+
Sbjct: 361 SGSQVVASSTSTGAGASNSSGGGGSGGGGGGGGGGGGGGSGS 402


>gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens]
          Length = 483

 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 31 AAGAAGSAGGSSGAAGAAGGGAGAGTRPGD-GGTASAGAAGPGAAT 75
          +A   G  GG   + GA GGG GA +  G  GG+   G+ GPGA T
Sbjct: 39 SASGPGGTGGGKASVGAMGGGVGASSSGGGPGGSGGGGSGGPGAGT 84



 Score = 35.0 bits (79), Expect = 0.065
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 24 RSNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKA 77
          R+  ++ A    G  GG  G  G+A G  G G     GG AS GA G G    +
Sbjct: 16 RARTSSFAEPGGGGGGGGGGPGGSASGPGGTG-----GGKASVGAMGGGVGASS 64



 Score = 34.7 bits (78), Expect = 0.085
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 33 GAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAA 74
          G  G  G +SG  G  GG A  G   G  G +S+G  GPG +
Sbjct: 32 GGGGPGGSASGPGGTGGGKASVGAMGGGVGASSSGG-GPGGS 72



 Score = 28.1 bits (61), Expect = 7.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 30 SAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTA 64
          ++ GA G   G+S + G  GG  G G+     GT+
Sbjct: 51 ASVGAMGGGVGASSSGGGPGGSGGGGSGGPGAGTS 85


>gi|23510368 homeobox D11 [Homo sapiens]
          Length = 338

 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 24/60 (40%), Positives = 28/60 (46%)

Query: 23  ERSNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKAVTKDE 82
           ER+       G  GSAGG S   G  GGG GAG        A+A AA   AA +A  + E
Sbjct: 69  ERAKWPYRGGGGGGSAGGGSSGGGPGGGGGGAGGYAPYYAAAAAAAAAAAAAEEAAMQRE 128



 Score = 31.6 bits (70), Expect = 0.72
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 17  DKKKKKERSNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATK 76
           ++ K   R      +AG   S GG  G  G AGG A     P     A+A AA   A   
Sbjct: 69  ERAKWPYRGGGGGGSAGGGSSGGGPGGGGGGAGGYA-----PYYAAAAAAAAAAAAAEEA 123

Query: 77  AVTKD 81
           A+ ++
Sbjct: 124 AMQRE 128


>gi|55956899 keratin 9 [Homo sapiens]
          Length = 623

 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 10/117 (8%)

Query: 29  ASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTAS-AGAAGPGAATKAVTKDEDEWKE 87
           AS  G + S G   G  G +GGG G G   G GG     G AG G        ++   +E
Sbjct: 100 ASGGGYSSSGGFGGGFGGGSGGGFGGGYGSGFGGFGGFGGGAGGGDGGILTANEKSTMQE 159

Query: 88  LEQKEVDYSGLRVQAMQISSEKEEDDNEKRQDPGDNWEEGGGGGGGMEKSSGPWNKT 144
           L  +   Y   +VQA++   E   D   K QD  D       G   ++K+  P+  T
Sbjct: 160 LNSRLASYLD-KVQALE---EANNDLENKIQDWYDK-----KGPAAIQKNYSPYYNT 207



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 18/43 (41%), Positives = 25/43 (58%)

Query: 28  AASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAG 70
           + S  G+ GS GG SG+ G +GGG G G+  G  G +  G +G
Sbjct: 510 SGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGGGHSG 552



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 33  GAAGSAGGSSGAAGAAGG-GAGAGTRPGDGGTASAGAAGPGAA 74
           G+ G +GGS G  G+ GG G G+G+R G GG+   G+   G +
Sbjct: 488 GSRGGSGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGS 530



 Score = 39.3 bits (90), Expect = 0.003
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 31  AAGAAGSAGGSSGAAGAAGGG--AGAGTRPGDGGTASAGAAGPG 72
           + G+ G+ GG SG+ G +GGG   G+G+R G GG+   G+   G
Sbjct: 551 SGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGG 594



 Score = 37.7 bits (86), Expect = 0.010
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 33  GAAGSAGGSSGAAG---AAGGGAGAGTRPGDGGTASAGAAG 70
           G +GS GGS G+ G    +GGG+G G   G GG  S G+ G
Sbjct: 508 GGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGGGHSGGSGG 548



 Score = 37.7 bits (86), Expect = 0.010
 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 24  RSNRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAG 70
           R     S  G +GS GGS    G  GGG+G G   G GG  S G+ G
Sbjct: 513 RGGSGGSYGGGSGSGGGS---GGGYGGGSGGGHSGGSGGGHSGGSGG 556



 Score = 36.6 bits (83), Expect = 0.022
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 25  SNRAASAAGAAGSAGGSSGAAGAAGG--GAGAGTRPGDGGTASAGAAG 70
           S  +    G+ G  GG SG+ G +GG  G G+G+  G GG    G+ G
Sbjct: 493 SGGSYGGGGSGGGYGGGSGSRGGSGGSYGGGSGSGGGSGGGYGGGSGG 540



 Score = 35.8 bits (81), Expect = 0.038
 Identities = 15/45 (33%), Positives = 23/45 (51%)

Query: 30  SAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAA 74
           S  G +G +GG+ G    +GGG+G G   G G    +G +  G +
Sbjct: 546 SGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGS 590



 Score = 35.0 bits (79), Expect = 0.065
 Identities = 16/43 (37%), Positives = 20/43 (46%)

Query: 28  AASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAG 70
           + S  G+ GS GG SG  G +GG  G G      G    G +G
Sbjct: 576 SGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSG 618



 Score = 33.9 bits (76), Expect = 0.14
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 28  AASAAGAAGSAGGSSGAAGAAGG--GAGAGTRPGDGGTASAGAAGPGA 73
           + S  G+ G  GG SG+ G +GG  G G+G     GG+   G    G+
Sbjct: 562 SGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGS 609



 Score = 33.5 bits (75), Expect = 0.19
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 5/46 (10%)

Query: 30  SAAGAAGSAGG--SSGAAGAAGGGAGAGTRPG---DGGTASAGAAG 70
           S  G +G +GG  S G+ G  GGG+G+G   G    GG+ S G +G
Sbjct: 538 SGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRGGSG 583



 Score = 33.1 bits (74), Expect = 0.25
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 30  SAAGAAGSAGGSSGAAGAAGGGAGAGTRPG---DGGTASAGAAG 70
           S  G  G +G   G+ G+ GGG+G G   G    GG  ++G+ G
Sbjct: 568 SGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGGEEASGSGG 611



 Score = 32.3 bits (72), Expect = 0.42
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 34  AAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPG 72
           ++G+     G  G +GG  G G+R G GG+   G +G G
Sbjct: 467 SSGAGKIGLGGRGGSGGSYGRGSRGGSGGSYGGGGSGGG 505



 Score = 30.8 bits (68), Expect = 1.2
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 30  SAAGAAGSAGG--SSGAAGAAGGGAGAGTRPGDG-GTASAGAAGPGAATK 76
           S  G  G +GG  S G+ G   GG+G     G G G  S G  G G+ ++
Sbjct: 530 SGGGYGGGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSR 579



 Score = 30.4 bits (67), Expect = 1.6
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 32 AGAAGSAGGSSGAAGAAGGGA-GAGTRPGDGGTASAGAAGPG 72
          + ++G  GGSS   G  GGG+ G     G GG  SA + G G
Sbjct: 48 SSSSGYGGGSSRVCGRGGGGSFGYSYGGGSGGGFSASSLGGG 89



 Score = 30.4 bits (67), Expect = 1.6
 Identities = 15/47 (31%), Positives = 20/47 (42%)

Query: 26  NRAASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPG 72
           N    +    GS GG  G +G+ GG  G+       G  S G+ G G
Sbjct: 557 NYGGGSGSGGGSGGGYGGGSGSRGGSGGSHGGGSGFGGESGGSYGGG 603



 Score = 29.3 bits (64), Expect = 3.6
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 7/54 (12%)

Query: 25  SNRAASAAGAAG---SAGGSSG---AAGAAGGGAGAGTRPGDGGTASAGAAGPG 72
           S+R     G      S GG SG   +A + GGG G G+R G GG +  G +  G
Sbjct: 57  SSRVCGRGGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR-GFGGASGGGYSSSG 109


>gi|239757043 PREDICTED: functional smad suppressing element 18
           [Homo sapiens]
          Length = 996

 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 25/47 (53%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 30  SAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATK 76
           SAA A+ S   +SG AG  GGGAG G   G G  A AG AG GA  K
Sbjct: 330 SAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAG-AGAGAGAK 375



 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 3/109 (2%)

Query: 28  AASAAGAAGSAGGSSGAAGAAGGG--AGAGTRPGDGGTASAGAAGPGAATKAVTKDEDEW 85
           AA++   A ++GG+    G AGGG  AG G   G G  A AGA GP +        +  +
Sbjct: 332 AAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGSF 391

Query: 86  KELEQKEVDYSGLRVQAMQISSEKEEDD-NEKRQDPGDNWEEGGGGGGG 133
             + QK     GL        +         K++D G   E  GG G G
Sbjct: 392 GGVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAG 440



 Score = 35.8 bits (81), Expect = 0.038
 Identities = 44/194 (22%), Positives = 69/194 (35%), Gaps = 32/194 (16%)

Query: 58  PGDGGTASAGAAGPGAATKAVTKDEDEWKELEQKEVDYSGLRVQAMQISSEKEEDDNEKR 117
           P   G  S G       ++  ++DED+  E E++EVD  G            E ++ E+ 
Sbjct: 711 PHHRGLLSPGGTSCSYPSEDSSEDEDD--EEEEQEVDVEG--------HKPPEGEEEEEG 760

Query: 118 QDPGDNWEEGGG----------GGGGMEKSSGPWNKTAPVQAPPAPV----IVTETPEPA 163
           +DP D+ EE             GGG   +  GP  K +     PA      +   +    
Sbjct: 761 RDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGSSRDRAPAVAGAFPLGLNSSRLL 820

Query: 164 MTSGVYRPPGARLTTTRKTPQGPPEIY--------SDTQFPSLQSTAKHVESRKDKEMEK 215
              G    PG+ L      P  P +          S    PSL+    + +S+K KE  +
Sbjct: 821 QEDGKLGDPGSDLPPPPPPPLAPQKASGGGSSSPGSPVHHPSLEEQPSYKDSQKTKENNQ 880

Query: 216 SFEVVRHKNRGRDE 229
                +  N   D+
Sbjct: 881 VIVSTKDDNSFSDK 894



 Score = 33.9 bits (76), Expect = 0.14
 Identities = 20/50 (40%), Positives = 24/50 (48%)

Query: 28  AASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKA 77
           AA  A A+ SA  +S +  AA GGAG G     GG  +    G GA   A
Sbjct: 321 AAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGA 370


>gi|239751555 PREDICTED: functional smad suppressing element 18
           [Homo sapiens]
          Length = 1252

 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 25/47 (53%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 30  SAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATK 76
           SAA A+ S   +SG AG  GGGAG G   G G  A AG AG GA  K
Sbjct: 330 SAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAG-AGAGAGAK 375



 Score = 41.6 bits (96), Expect = 7e-04
 Identities = 33/109 (30%), Positives = 45/109 (41%), Gaps = 3/109 (2%)

Query: 28  AASAAGAAGSAGGSSGAAGAAGGG--AGAGTRPGDGGTASAGAAGPGAATKAVTKDEDEW 85
           AA++   A ++GG+    G AGGG  AG G   G G  A AGA GP +        +  +
Sbjct: 332 AAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGAGAGAKGPRSYPVIPVPSKGSF 391

Query: 86  KELEQKEVDYSGLRVQAMQISSEKEEDD-NEKRQDPGDNWEEGGGGGGG 133
             + QK     GL        +         K++D G   E  GG G G
Sbjct: 392 GGVLQKFPGCGGLFPHPYTFPAAAAAFSLCHKKEDAGAAAEALGGAGAG 440



 Score = 35.0 bits (79), Expect = 0.065
 Identities = 45/194 (23%), Positives = 66/194 (34%), Gaps = 32/194 (16%)

Query: 58  PGDGGTASAGAAGPGAATKAVTKDEDEWKELEQKEVDYSGLRVQAMQISSEKEEDDNEKR 117
           P   G  S G  G      +    EDE  E E++EVD  G            E ++ E+ 
Sbjct: 711 PHHRGLLSPG--GTSCCYPSEDSSEDEDDEEEEQEVDVEG--------HKPPEGEEEEEG 760

Query: 118 QDPGDNWEEGGG----------GGGGMEKSSGPWNKTAPVQAPPAPV----IVTETPEPA 163
           +DP D+ EE             GGG   +  GP  K +     PA      +   +    
Sbjct: 761 RDPDDDEEEDEETEVLLGDPLVGGGRFLQGRGPSEKGSSRDRAPAVAGAFPLGLNSSRLL 820

Query: 164 MTSGVYRPPGARLTTTRKTPQGPPEIY--------SDTQFPSLQSTAKHVESRKDKEMEK 215
              G    PG+ L      P  P +          S    PSL+    + +S+K KE  +
Sbjct: 821 QEDGKLGDPGSDLPPPPPPPLAPQKASGGGSSSPGSPVHHPSLEEQPSYKDSQKTKENNQ 880

Query: 216 SFEVVRHKNRGRDE 229
                +  N   D+
Sbjct: 881 VIVSTKDDNSFSDK 894



 Score = 33.9 bits (76), Expect = 0.14
 Identities = 20/50 (40%), Positives = 24/50 (48%)

Query: 28  AASAAGAAGSAGGSSGAAGAAGGGAGAGTRPGDGGTASAGAAGPGAATKA 77
           AA  A A+ SA  +S +  AA GGAG G     GG  +    G GA   A
Sbjct: 321 AAVVAAASLSAAAASLSVAAASGGAGTGGGGAGGGCVAGVGVGAGAGAGA 370


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.303    0.123    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,112,247
Number of Sequences: 37866
Number of extensions: 739559
Number of successful extensions: 16474
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 516
Number of HSP's that attempted gapping in prelim test: 7172
Number of HSP's gapped (non-prelim): 5888
length of query: 258
length of database: 18,247,518
effective HSP length: 100
effective length of query: 158
effective length of database: 14,460,918
effective search space: 2284825044
effective search space used: 2284825044
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.