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Search of human proteins with 14150167
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14150167 hypothetical protein LOC84319 [Homo sapiens]
(279 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14150167 hypothetical protein LOC84319 [Homo sapiens] 560 e-160
gi|4758112 HLA-B associated transcript 1 [Homo sapiens] 45 9e-05
gi|18375623 HLA-B associated transcript 1 [Homo sapiens] 45 9e-05
gi|21040371 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Homo sapi... 42 6e-04
gi|4826686 DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 [Homo sapiens] 40 0.002
gi|87196351 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo... 35 0.056
gi|169881239 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked ... 35 0.056
gi|13514809 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [... 35 0.056
gi|50659095 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo sapi... 34 0.12
gi|13129006 nucleolar protein GU2 [Homo sapiens] 33 0.21
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 33 0.28
gi|148613856 DEAD box polypeptide 17 isoform 3 [Homo sapiens] 33 0.36
gi|38201710 DEAD box polypeptide 17 isoform 1 [Homo sapiens] 33 0.36
gi|4503529 eukaryotic translation initiation factor 4A isoform 1... 33 0.36
gi|14251212 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 [Homo sapi... 33 0.36
gi|4758316 ets variant gene 5 (ets-related molecule) [Homo sapiens] 33 0.36
gi|208431781 cyclic nucleotide gated channel beta 1 isoform b [H... 32 0.47
gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H... 32 0.47
gi|12083581 phosphoinositide-specific phospholipase C beta 1 iso... 32 0.62
gi|33356544 phosphoinositide-specific phospholipase C beta 1 iso... 32 0.62
gi|4758138 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Homo sapiens] 32 0.80
gi|110349719 titin isoform N2-A [Homo sapiens] 32 0.80
gi|38327522 cardiac ankyrin repeat protein [Homo sapiens] 32 0.80
gi|48255931 hepatoma-derived growth factor-related protein 2 iso... 32 0.80
gi|14249158 hepatoma-derived growth factor-related protein 2 iso... 32 0.80
gi|9961250 ATP-binding cassette, subfamily B, member 4 isoform B... 31 1.4
gi|9961252 ATP-binding cassette, subfamily B, member 4 isoform C... 31 1.4
gi|4505771 ATP-binding cassette, subfamily B, member 4 isoform A... 31 1.4
gi|164664518 DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Homo sapi... 31 1.4
gi|116235478 establishment of cohesion 1 homolog 1 [Homo sapiens] 31 1.4
>gi|14150167 hypothetical protein LOC84319 [Homo sapiens]
Length = 279
Score = 560 bits (1442), Expect = e-160
Identities = 279/279 (100%), Positives = 279/279 (100%)
Query: 1 MADDLGDEWWENQPTGAGSSPEASDGEGEGDTEVMQQETVPVPVPSEKTKQPKECFLIQP 60
MADDLGDEWWENQPTGAGSSPEASDGEGEGDTEVMQQETVPVPVPSEKTKQPKECFLIQP
Sbjct: 1 MADDLGDEWWENQPTGAGSSPEASDGEGEGDTEVMQQETVPVPVPSEKTKQPKECFLIQP 60
Query: 61 KERKENTTKTRKRRKKKITDVLAKSEPKPGLPEDLQKLMKDYYSSRRLVIELEELNLPDS 120
KERKENTTKTRKRRKKKITDVLAKSEPKPGLPEDLQKLMKDYYSSRRLVIELEELNLPDS
Sbjct: 61 KERKENTTKTRKRRKKKITDVLAKSEPKPGLPEDLQKLMKDYYSSRRLVIELEELNLPDS 120
Query: 121 CFLKANDLTHSLSSYLKGICPKWVKLRKNHSEKKSVLMLIICSSAVRALELIRSMTAFRG 180
CFLKANDLTHSLSSYLKGICPKWVKLRKNHSEKKSVLMLIICSSAVRALELIRSMTAFRG
Sbjct: 121 CFLKANDLTHSLSSYLKGICPKWVKLRKNHSEKKSVLMLIICSSAVRALELIRSMTAFRG 180
Query: 181 DGKVIKLFAKHIKVQAQVKLLEKRVVHLGVGTPGRIKELVKQGGLNLSPLKFLVFDWNWR 240
DGKVIKLFAKHIKVQAQVKLLEKRVVHLGVGTPGRIKELVKQGGLNLSPLKFLVFDWNWR
Sbjct: 181 DGKVIKLFAKHIKVQAQVKLLEKRVVHLGVGTPGRIKELVKQGGLNLSPLKFLVFDWNWR 240
Query: 241 DQKLRRMMDIPEIRKEVFELLEMGVLSLCKSESLKLGLF 279
DQKLRRMMDIPEIRKEVFELLEMGVLSLCKSESLKLGLF
Sbjct: 241 DQKLRRMMDIPEIRKEVFELLEMGVLSLCKSESLKLGLF 279
>gi|4758112 HLA-B associated transcript 1 [Homo sapiens]
Length = 428
Score = 44.7 bits (104), Expect = 9e-05
Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 156 VLMLIICSSAVRALELIRSMTAFRGDGKVIKL--FAKHIKVQAQVKLLEKRVVHLGVGTP 213
V +L++C + A ++ + F +K+ F + ++ ++L+K H+ VGTP
Sbjct: 114 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP 173
Query: 214 GRIKELVKQGGLNLSPLKFLVFDWNWRDQKLRRMMDIPEIRKEVFELLEM 263
GRI L + LNL +K + D + +M++ ++R++V E+ M
Sbjct: 174 GRILALARNKSLNLKHIKHFILD------ECDKMLEQLDMRRDVQEIFRM 217
>gi|18375623 HLA-B associated transcript 1 [Homo sapiens]
Length = 428
Score = 44.7 bits (104), Expect = 9e-05
Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 156 VLMLIICSSAVRALELIRSMTAFRGDGKVIKL--FAKHIKVQAQVKLLEKRVVHLGVGTP 213
V +L++C + A ++ + F +K+ F + ++ ++L+K H+ VGTP
Sbjct: 114 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTP 173
Query: 214 GRIKELVKQGGLNLSPLKFLVFDWNWRDQKLRRMMDIPEIRKEVFELLEM 263
GRI L + LNL +K + D + +M++ ++R++V E+ M
Sbjct: 174 GRILALARNKSLNLKHIKHFILD------ECDKMLEQLDMRRDVQEIFRM 217
>gi|21040371 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Homo
sapiens]
Length = 427
Score = 42.0 bits (97), Expect = 6e-04
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 156 VLMLIICSSAVRALELIRSMTAFRGDGKVIKL--FAKHIKVQAQVKLLEKRVVHLGVGTP 213
V +L++C + A ++ + F +K+ F + ++ ++L+K H+ VGTP
Sbjct: 113 VTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTP 172
Query: 214 GRIKELVKQGGLNLSPLKFLVFDWNWRDQKLRRMMDIPEIRKEVFEL 260
GRI LV+ +L +K V D K+ +D+ +E+F L
Sbjct: 173 GRILALVRNRSFSLKNVKHFVLD---ECDKMLEQLDMRRDVQEIFRL 216
>gi|4826686 DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 [Homo sapiens]
Length = 740
Score = 40.0 bits (92), Expect = 0.002
Identities = 21/45 (46%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 192 IKVQAQVKLLEKRVVHLGVGTPGRIKELVKQGGLNLSPLKFLVFD 236
+ + Q+ +LE V + VGTPGR+ +LV G LNLS ++FLV D
Sbjct: 327 VAARDQLSVLENGV-DIVVGTPGRLDDLVSTGKLNLSQVRFLVLD 370
>gi|87196351 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo
sapiens]
Length = 662
Score = 35.4 bits (80), Expect = 0.056
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 10/64 (15%)
Query: 197 QVKLLEKRVVHLGVGTPGRIKELVKQGGLNLSPLKFLVFDWNWRDQKLRRMMDI---PEI 253
Q++ LE R HL V TPGR+ +++++G + L K+LV D + RM+D+ P+I
Sbjct: 309 QIRDLE-RGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD------EADRMLDMGFEPQI 361
Query: 254 RKEV 257
R+ V
Sbjct: 362 RRIV 365
>gi|169881239 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
[Homo sapiens]
Length = 660
Score = 35.4 bits (80), Expect = 0.056
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 10/64 (15%)
Query: 197 QVKLLEKRVVHLGVGTPGRIKELVKQGGLNLSPLKFLVFDWNWRDQKLRRMMDI---PEI 253
Q++ LE R HL V TPGR+ +++++G + L K+LV D + RM+D+ P+I
Sbjct: 307 QIRDLE-RGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD------EADRMLDMGFEPQI 359
Query: 254 RKEV 257
R+ V
Sbjct: 360 RRIV 363
>gi|13514809 DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
[Homo sapiens]
Length = 660
Score = 35.4 bits (80), Expect = 0.056
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 10/64 (15%)
Query: 197 QVKLLEKRVVHLGVGTPGRIKELVKQGGLNLSPLKFLVFDWNWRDQKLRRMMDI---PEI 253
Q++ LE R HL V TPGR+ +++++G + L K+LV D + RM+D+ P+I
Sbjct: 307 QIRDLE-RGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD------EADRMLDMGFEPQI 359
Query: 254 RKEV 257
R+ V
Sbjct: 360 RRIV 363
>gi|50659095 DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 [Homo
sapiens]
Length = 783
Score = 34.3 bits (77), Expect = 0.12
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 210 VGTPGRIKELVKQGGLNLSPLKFLVFD 236
VGTPGRIK+ ++ G L+L+ LK +V D
Sbjct: 313 VGTPGRIKDHIQNGKLDLTKLKHVVLD 339
>gi|13129006 nucleolar protein GU2 [Homo sapiens]
Length = 737
Score = 33.5 bits (75), Expect = 0.21
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 210 VGTPGRIKELVKQGGLNLSPLKFLVFD 236
VGTPGRIK+ ++ G L+LS L+ +V D
Sbjct: 264 VGTPGRIKDHLQSGRLDLSKLRHVVLD 290
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 33.1 bits (74), Expect = 0.28
Identities = 21/91 (23%), Positives = 40/91 (43%)
Query: 11 ENQPTGAGSSPEASDGEGEGDTEVMQQETVPVPVPSEKTKQPKECFLIQPKERKENTTKT 70
E +P+ + + EV +++ V + K K K+ ++P+++KE K
Sbjct: 597 ETKPSVTEKEVPSKEEPSPVKAEVAEKQATDVKPKAAKEKTVKKETKVKPEDKKEEKEKP 656
Query: 71 RKRRKKKITDVLAKSEPKPGLPEDLQKLMKD 101
+K KK K E KP E +++ K+
Sbjct: 657 KKEVAKKEDKTPIKKEEKPKKEEVKKEVKKE 687
>gi|148613856 DEAD box polypeptide 17 isoform 3 [Homo sapiens]
Length = 731
Score = 32.7 bits (73), Expect = 0.36
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 197 QVKLLEKRVVHLGVGTPGRIKELVKQGGLNLSPLKFLVFDWNWRDQKLRRMMDI---PEI 253
Q++ LE R V + + TPGR+ + ++ G NL +LV D + RM+D+ P+I
Sbjct: 287 QIRDLE-RGVEICIATPGRLIDFLESGKTNLRRCTYLVLD------EADRMLDMGFEPQI 339
Query: 254 RKEVFEL 260
RK V ++
Sbjct: 340 RKIVDQI 346
>gi|38201710 DEAD box polypeptide 17 isoform 1 [Homo sapiens]
Length = 729
Score = 32.7 bits (73), Expect = 0.36
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 197 QVKLLEKRVVHLGVGTPGRIKELVKQGGLNLSPLKFLVFDWNWRDQKLRRMMDI---PEI 253
Q++ LE R V + + TPGR+ + ++ G NL +LV D + RM+D+ P+I
Sbjct: 287 QIRDLE-RGVEICIATPGRLIDFLESGKTNLRRCTYLVLD------EADRMLDMGFEPQI 339
Query: 254 RKEVFEL 260
RK V ++
Sbjct: 340 RKIVDQI 346
>gi|4503529 eukaryotic translation initiation factor 4A isoform 1
[Homo sapiens]
Length = 406
Score = 32.7 bits (73), Expect = 0.36
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 194 VQAQVKLLEKRVVHLGVGTPGRIKELVKQGGLNLSPLKFLVFD 236
V+A+V+ L+ H+ VGTPGR+ +++ + L+ +K V D
Sbjct: 140 VRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLD 182
>gi|14251212 DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 [Homo
sapiens]
Length = 824
Score = 32.7 bits (73), Expect = 0.36
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 152 EKKSVLMLIICSSAVRALELIRSMTAF--RGDGKVIKLFAKHIKVQAQVKLLEKRVVHLG 209
E S +LI+ + A+++ +TA + +G +F + L+K H+
Sbjct: 127 ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK--CHIA 184
Query: 210 VGTPGRIKELVKQGGLNLSPLKFLVFD 236
VG+PGRIK+L++ LN ++ + D
Sbjct: 185 VGSPGRIKQLIELDYLNPGSIRLFILD 211
>gi|4758316 ets variant gene 5 (ets-related molecule) [Homo sapiens]
Length = 510
Score = 32.7 bits (73), Expect = 0.36
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 17 AGSSPEASDGEGEGDTEVMQQETVPVPVPSEKT---KQPKECFLIQPKERKENTTKTRKR 73
+G +P A +G G ++P P P ++T +P L PK EN + +R
Sbjct: 160 SGHAPAAGPVQGVGPAPA--PHSLPEPGPQQQTFAVPRPPHQPLQMPKMMPENQYPSEQR 217
Query: 74 RKKKITDVLAKSEPKPGLPED 94
++++++ P+PG+P D
Sbjct: 218 FQRQLSEPCHPFPPQPGVPGD 238
>gi|208431781 cyclic nucleotide gated channel beta 1 isoform b [Homo
sapiens]
Length = 299
Score = 32.3 bits (72), Expect = 0.47
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 8 EWWENQP---TGAGSSPEASDGEGEGDTEVMQQET--VPVPVPSEKTKQPKECFLIQPKE 62
E W ++P TGA S P E ++ +ET +P P+P + ++PKE +P+
Sbjct: 178 EVWRDEPAVATGAASDPAPPGRPQEMGPKLQARETPSLPTPIPLQPKEEPKEAPAPEPQP 237
Query: 63 RKENTTKT 70
+ T +
Sbjct: 238 GSQAQTSS 245
>gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo
sapiens]
Length = 1251
Score = 32.3 bits (72), Expect = 0.47
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 8 EWWENQP---TGAGSSPEASDGEGEGDTEVMQQET--VPVPVPSEKTKQPKECFLIQPKE 62
E W ++P TGA S P E ++ +ET +P P+P + ++PKE +P+
Sbjct: 178 EVWRDEPAVATGAASDPAPPGRPQEMGPKLQARETPSLPTPIPLQPKEEPKEAPAPEPQP 237
Query: 63 RKENTTKT 70
+ T +
Sbjct: 238 GSQAQTSS 245
>gi|12083581 phosphoinositide-specific phospholipase C beta 1 isoform
a [Homo sapiens]
Length = 1216
Score = 32.0 bits (71), Expect = 0.62
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 48 KTKQPKECFLIQPKERKENTTKTRKRRKKKITDVLAKSEPKPGLPEDLQKLMKDY 102
+ Q K+ I KE+KE K K+R++KIT+ AKS+ K + E+ ++++ Y
Sbjct: 1050 QNNQLKKLKEICEKEKKELKKKMDKKRQEKITE--AKSKDKSQMEEEKTEMIRSY 1102
>gi|33356544 phosphoinositide-specific phospholipase C beta 1 isoform
b [Homo sapiens]
Length = 1173
Score = 32.0 bits (71), Expect = 0.62
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 48 KTKQPKECFLIQPKERKENTTKTRKRRKKKITDVLAKSEPKPGLPEDLQKLMKDY 102
+ Q K+ I KE+KE K K+R++KIT+ AKS+ K + E+ ++++ Y
Sbjct: 1050 QNNQLKKLKEICEKEKKELKKKMDKKRQEKITE--AKSKDKSQMEEEKTEMIRSY 1102
>gi|4758138 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Homo sapiens]
Length = 614
Score = 31.6 bits (70), Expect = 0.80
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 197 QVKLLEKRVVHLGVGTPGRIKELVKQGGLNLSPLKFLVFDWNWRDQKLRRMMDI---PEI 253
Q++ LE R V + + TPGR+ + ++ G NL +LV D + RM+D+ P+I
Sbjct: 210 QIRDLE-RGVEICIATPGRLIDFLECGKTNLRRTTYLVLD------EADRMLDMGFEPQI 262
Query: 254 RKEVFEL 260
RK V ++
Sbjct: 263 RKIVDQI 269
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 31.6 bits (70), Expect = 0.80
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 33 EVMQQETVPVPVPSEKTKQPKECFLIQPKERKENTTK--TRKRRKKKITDVLAKSEPKP 89
+ + +E VPVP+P +K K P +PK+ E + KR K+++T+ AK KP
Sbjct: 9817 KAVPEEKVPVPIP-KKLKPPPPKVPEEPKKVFEEKIRISITKREKEQVTEPAAKVPMKP 9874
>gi|38327522 cardiac ankyrin repeat protein [Homo sapiens]
Length = 319
Score = 31.6 bits (70), Expect = 0.80
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 23/120 (19%)
Query: 25 DGEGEGDTEVMQQETV------PVPVPSEKTKQPKECFLIQPKERKENTTKT-------- 70
DGE E + +QE + PV + ++ K K+ K++ E +K
Sbjct: 30 DGEYEAAVTLEKQEDLKTLLAHPVTLGEQQWKSEKQREAELKKKKLEQRSKLENLEDLEI 89
Query: 71 ----RKRRKKKITDVLAKSEPKPGL---PEDLQKLMKDYYSSRRLVIE--LEELNLPDSC 121
+KR+K + T V EP+P + P D+ +K ++ V+E L + N PD C
Sbjct: 90 IIQLKKRKKYRKTKVPVVKEPEPEIITEPVDVPTFLKAALENKLPVVEKFLSDKNNPDVC 149
>gi|48255931 hepatoma-derived growth factor-related protein 2
isoform 1 [Homo sapiens]
Length = 671
Score = 31.6 bits (70), Expect = 0.80
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 19/91 (20%)
Query: 21 PEASDGEGEGDTE---------VMQQETVPVPVPSEKTKQPKECFLIQPKERKE----NT 67
P +SD E E + E T P P +K K+ ++P+E+++
Sbjct: 394 PSSSDSEPEAELEREAKKSAKKPQSSSTEPARKPGQKEKR------VRPEEKQQAKPVKV 447
Query: 68 TKTRKRRKKKITDVLAKSEPKPGLPEDLQKL 98
+TRKR + D + + +P + E LQKL
Sbjct: 448 ERTRKRSEGFSMDRKVEKKKEPSVEEKLQKL 478
>gi|14249158 hepatoma-derived growth factor-related protein 2
isoform 2 [Homo sapiens]
Length = 670
Score = 31.6 bits (70), Expect = 0.80
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 19/91 (20%)
Query: 21 PEASDGEGEGDTE---------VMQQETVPVPVPSEKTKQPKECFLIQPKERKE----NT 67
P +SD E E + E T P P +K K+ ++P+E+++
Sbjct: 394 PSSSDSEPEAELEREAKKSAKKPQSSSTEPARKPGQKEKR------VRPEEKQQAKPVKV 447
Query: 68 TKTRKRRKKKITDVLAKSEPKPGLPEDLQKL 98
+TRKR + D + + +P + E LQKL
Sbjct: 448 ERTRKRSEGFSMDRKVEKKKEPSVEEKLQKL 478
>gi|9961250 ATP-binding cassette, subfamily B, member 4 isoform B
[Homo sapiens]
Length = 1286
Score = 30.8 bits (68), Expect = 1.4
Identities = 16/69 (23%), Positives = 34/69 (49%)
Query: 143 WVKLRKNHSEKKSVLMLIICSSAVRALELIRSMTAFRGDGKVIKLFAKHIKVQAQVKLLE 202
W K+ S+K+ + A AL IR++ AF G K ++ + KH++ ++ + +
Sbjct: 234 WAKILSAFSDKELAAYAKAGAVAEEALGAIRTVIAFGGQNKELERYQKHLENAKEIGIKK 293
Query: 203 KRVVHLGVG 211
++ +G
Sbjct: 294 AISANISMG 302
>gi|9961252 ATP-binding cassette, subfamily B, member 4 isoform C
[Homo sapiens]
Length = 1232
Score = 30.8 bits (68), Expect = 1.4
Identities = 16/69 (23%), Positives = 34/69 (49%)
Query: 143 WVKLRKNHSEKKSVLMLIICSSAVRALELIRSMTAFRGDGKVIKLFAKHIKVQAQVKLLE 202
W K+ S+K+ + A AL IR++ AF G K ++ + KH++ ++ + +
Sbjct: 234 WAKILSAFSDKELAAYAKAGAVAEEALGAIRTVIAFGGQNKELERYQKHLENAKEIGIKK 293
Query: 203 KRVVHLGVG 211
++ +G
Sbjct: 294 AISANISMG 302
>gi|4505771 ATP-binding cassette, subfamily B, member 4 isoform A
[Homo sapiens]
Length = 1279
Score = 30.8 bits (68), Expect = 1.4
Identities = 16/69 (23%), Positives = 34/69 (49%)
Query: 143 WVKLRKNHSEKKSVLMLIICSSAVRALELIRSMTAFRGDGKVIKLFAKHIKVQAQVKLLE 202
W K+ S+K+ + A AL IR++ AF G K ++ + KH++ ++ + +
Sbjct: 234 WAKILSAFSDKELAAYAKAGAVAEEALGAIRTVIAFGGQNKELERYQKHLENAKEIGIKK 293
Query: 203 KRVVHLGVG 211
++ +G
Sbjct: 294 AISANISMG 302
>gi|164664518 DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 [Homo
sapiens]
Length = 483
Score = 30.8 bits (68), Expect = 1.4
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 206 VHLGVGTPGRIKELVKQGGLNLSPLKFLVFD 236
VH+ + TPGRI +L+K+G + ++ +V D
Sbjct: 216 VHVVIATPGRILDLIKKGVAKVDHVQMIVLD 246
>gi|116235478 establishment of cohesion 1 homolog 1 [Homo sapiens]
Length = 840
Score = 30.8 bits (68), Expect = 1.4
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 5/97 (5%)
Query: 11 ENQPTGAGSSPEASDGEGEGDTEVMQQETVPVPVPSEKTKQPKECFLIQPKERKENTTKT 70
E+Q A SS E + ET PVPV SE K+ K + P K+N K
Sbjct: 209 EHQTACACSSQCTQGSEKCPQKTTRRDETKPVPVTSE-VKRSKMATSVVP---KKNEMKK 264
Query: 71 RKRRKKKITDVLAKSEPKPGLPEDLQKLMKDYYSSRR 107
+ L KS P+P +PE ++ S+R
Sbjct: 265 SVHTQVNTNTTLPKS-PQPSVPEQSDNELEQAGKSKR 300
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,309,953
Number of Sequences: 37866
Number of extensions: 542262
Number of successful extensions: 2763
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 2667
Number of HSP's gapped (non-prelim): 169
length of query: 279
length of database: 18,247,518
effective HSP length: 101
effective length of query: 178
effective length of database: 14,423,052
effective search space: 2567303256
effective search space used: 2567303256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.