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Search of human proteins with 14149861
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|14149861 solute carrier family 7, member 6 opposite strand
[Homo sapiens]
(309 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|14149861 solute carrier family 7, member 6 opposite strand [H... 620 e-178
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 45 6e-05
gi|33946282 hypothetical protein LOC25962 isoform 1 [Homo sapiens] 43 4e-04
gi|33946280 hypothetical protein LOC25962 isoform 2 [Homo sapiens] 43 4e-04
gi|86262149 zinc finger and BTB domain containing 7C [Homo sapiens] 42 5e-04
gi|5453880 acidic (leucine-rich) nuclear phosphoprotein 32 famil... 42 0.001
gi|5454088 acidic (leucine-rich) nuclear phosphoprotein 32 famil... 42 0.001
gi|157743245 WD repeat domain 43 [Homo sapiens] 38 0.010
gi|21361639 DIPB protein [Homo sapiens] 38 0.013
gi|38788260 bromodomain PHD finger transcription factor isoform ... 38 0.013
gi|38788274 bromodomain PHD finger transcription factor isoform ... 38 0.013
gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 fami... 38 0.013
gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 38 0.013
gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 38 0.013
gi|6912604 acidic nuclear phosphoprotein 32C [Homo sapiens] 37 0.017
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 37 0.022
gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear... 37 0.029
gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear... 37 0.029
gi|115529449 upstream binding transcription factor, RNA polymera... 36 0.038
gi|115529451 upstream binding transcription factor, RNA polymera... 36 0.038
gi|7657671 upstream binding transcription factor, RNA polymerase... 36 0.038
gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo... 36 0.038
gi|118130872 mesoderm induction early response 1 isoform f [Homo... 36 0.049
gi|118130815 mesoderm induction early response 1 isoform c [Homo... 36 0.049
gi|225735631 mesoderm induction early response 1 isoform g [Homo... 35 0.065
gi|225735615 mesoderm induction early response 1 isoform a [Homo... 35 0.065
gi|225735612 mesoderm induction early response 1 isoform e [Homo... 35 0.065
gi|225735610 mesoderm induction early response 1 isoform d [Homo... 35 0.065
gi|225735607 mesoderm induction early response 1 isoform b [Homo... 35 0.065
gi|225735605 mesoderm induction early response 1 isoform a [Homo... 35 0.065
>gi|14149861 solute carrier family 7, member 6 opposite strand [Homo
sapiens]
Length = 309
Score = 620 bits (1598), Expect = e-178
Identities = 309/309 (100%), Positives = 309/309 (100%)
Query: 1 MEAARTAVLRVKRKRSAEPAEALVLACKRLRSDAVESAAQKTSEDLERAAENNVFHLVAT 60
MEAARTAVLRVKRKRSAEPAEALVLACKRLRSDAVESAAQKTSEDLERAAENNVFHLVAT
Sbjct: 1 MEAARTAVLRVKRKRSAEPAEALVLACKRLRSDAVESAAQKTSEDLERAAENNVFHLVAT 60
Query: 61 VCSQEEPVQPLLREVLRLSRDSQQRVRRNLRASAREVRQEGRYRVLSSRRSLGTTSSGQE 120
VCSQEEPVQPLLREVLRLSRDSQQRVRRNLRASAREVRQEGRYRVLSSRRSLGTTSSGQE
Sbjct: 61 VCSQEEPVQPLLREVLRLSRDSQQRVRRNLRASAREVRQEGRYRVLSSRRSLGTTSSGQE 120
Query: 121 SEYTPGNPEAAGNSGFQLLDLVHEEGEPEAASAGSCKTSDPDVILCNSVELIRERLTVSE 180
SEYTPGNPEAAGNSGFQLLDLVHEEGEPEAASAGSCKTSDPDVILCNSVELIRERLTVSE
Sbjct: 121 SEYTPGNPEAAGNSGFQLLDLVHEEGEPEAASAGSCKTSDPDVILCNSVELIRERLTVSE 180
Query: 181 DGPGVRRQEEQKHDDYVYDIYYLETATPGWIENILSVQPYSQEWELVNDDQEPEDIYDDE 240
DGPGVRRQEEQKHDDYVYDIYYLETATPGWIENILSVQPYSQEWELVNDDQEPEDIYDDE
Sbjct: 181 DGPGVRRQEEQKHDDYVYDIYYLETATPGWIENILSVQPYSQEWELVNDDQEPEDIYDDE 240
Query: 241 DDENSENNWRNEYPEEESSDGDEDSRGSADYNSLSEEERGSSRQRMWSKYPLDVQKEFGY 300
DDENSENNWRNEYPEEESSDGDEDSRGSADYNSLSEEERGSSRQRMWSKYPLDVQKEFGY
Sbjct: 241 DDENSENNWRNEYPEEESSDGDEDSRGSADYNSLSEEERGSSRQRMWSKYPLDVQKEFGY 300
Query: 301 DSPHDLDSD 309
DSPHDLDSD
Sbjct: 301 DSPHDLDSD 309
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 45.4 bits (106), Expect = 6e-05
Identities = 55/306 (17%), Positives = 115/306 (37%), Gaps = 44/306 (14%)
Query: 12 KRKRSAEPAEALVLACKRLRSDAVESAAQKTSEDLERAAENNVFHLVATVCSQEEPVQPL 71
++++ P++A V A + + E ++ E+ ER + E ++
Sbjct: 329 EKEKKKGPSKATVKAMQEALAKLKEEEERQKREEEERI-------------KRLEELEAK 375
Query: 72 LREVLRLSRDSQQRVRRNLRASAREVRQEGRYRVLSSRRSLGTTSSGQESEYTPGNPEAA 131
+E RL ++ ++R ++ + +++EG+ S R + + + G +
Sbjct: 376 RKEEERLEQEKRERKKQKEKERKERLKKEGKLLTKSQREARARAEATLKLLQAQGVEVPS 435
Query: 132 GNSGFQLLDLVHEEGEPEAASAGSCKTSDPDVILCNSVELIRERLTVSEDGPG-VRRQEE 190
+S + + ++ + K + LC +VE++ + + E+ P V +EE
Sbjct: 436 KDSLPKKRPIYEDKKRKKIPQQLESKEVSESMELCAAVEVMEQGVPEKEETPPPVEPEEE 495
Query: 191 QKHDDYVYDIYYLETATPGWIENILSVQPYSQEWELVNDDQEPEDIYDDEDDENSENNWR 250
+ +D D +WE + D+E E + ++ + N
Sbjct: 496 EDTEDAGLD-----------------------DWEAMASDEETEKVEGNKVHIEVKENPE 532
Query: 251 NEYPEEESSDGDEDSRGSADYNSLS-------EEERGSSRQRMWSKYPLDVQKEFGYDSP 303
E EEE + DE+S + S E+E+ S + KE DS
Sbjct: 533 EEEEEEEEEEEDEESEEEEEEEGESEGSEGDEEDEKVSDEKDSGKTLDKKPSKEMSSDSE 592
Query: 304 HDLDSD 309
+D D D
Sbjct: 593 YDSDDD 598
>gi|33946282 hypothetical protein LOC25962 isoform 1 [Homo sapiens]
Length = 1812
Score = 42.7 bits (99), Expect = 4e-04
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 15/126 (11%)
Query: 180 EDGPGVRRQEEQKHDDYVYDIYYLETATPGWIENILSVQPYSQEWELVNDDQEPE----- 234
ED P K +D + Y E +P ++ YS E E+ + QE
Sbjct: 195 EDDPVPLPVSGDKEEDAPHREDYFEPISPDR-NSVPQEGQYSDEGEVEEEQQEEGEEDED 253
Query: 235 --DIYDDEDDENSENNWRNEYPEEESSD----GDEDSRGSAD--YNSLSEEERG-SSRQR 285
D+ ++ED++ + + PEEE D G+ED G D Y +S +E G + +R
Sbjct: 254 DVDVEEEEDEDEDDRRTVDSIPEEEEEDEEEEGEEDEEGEGDDGYEQISSDEDGIADLER 313
Query: 286 MWSKYP 291
KYP
Sbjct: 314 ETFKYP 319
>gi|33946280 hypothetical protein LOC25962 isoform 2 [Homo sapiens]
Length = 1147
Score = 42.7 bits (99), Expect = 4e-04
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 15/126 (11%)
Query: 180 EDGPGVRRQEEQKHDDYVYDIYYLETATPGWIENILSVQPYSQEWELVNDDQEPE----- 234
ED P K +D + Y E +P ++ YS E E+ + QE
Sbjct: 195 EDDPVPLPVSGDKEEDAPHREDYFEPISPDR-NSVPQEGQYSDEGEVEEEQQEEGEEDED 253
Query: 235 --DIYDDEDDENSENNWRNEYPEEESSD----GDEDSRGSAD--YNSLSEEERG-SSRQR 285
D+ ++ED++ + + PEEE D G+ED G D Y +S +E G + +R
Sbjct: 254 DVDVEEEEDEDEDDRRTVDSIPEEEEEDEEEEGEEDEEGEGDDGYEQISSDEDGIADLER 313
Query: 286 MWSKYP 291
KYP
Sbjct: 314 ETFKYP 319
>gi|86262149 zinc finger and BTB domain containing 7C [Homo sapiens]
Length = 619
Score = 42.4 bits (98), Expect = 5e-04
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 20/122 (16%)
Query: 205 TATPGWIENILSVQPYSQEWELVN----------DDQEPEDIYDDEDDENSENNWRNEYP 254
T T G +++IL+ + +VN D E +D DD+DDE+ ++ E
Sbjct: 98 TITAGNVKHILNAARMLEIQCIVNVCLEIMEPGGDGGEEDDKEDDDDDEDDDDEEDEEEE 157
Query: 255 EEESSDGDEDSRGSADYNSLSEEERGSSRQ----------RMWSKYPLDVQKEFGYDSPH 304
EEE D D+D+ AD +L + + S Q + +S P D F SP
Sbjct: 158 EEEEEDDDDDTEDFADQENLPDPQDISCHQSPSKTDHLTEKAYSDTPRDFPDSFQAGSPG 217
Query: 305 DL 306
L
Sbjct: 218 HL 219
>gi|5453880 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member A [Homo sapiens]
Length = 249
Score = 41.6 bits (96), Expect = 0.001
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 209 GWIENILSVQPYSQEWELVNDDQEPEDIYD-DEDDENSENNWRNEYPEEESSDGDEDSRG 267
G++E + + E E D Q ED D DE++E E + E E+E D +
Sbjct: 162 GYVEGLDDEEEDEDEEEYDEDAQVVEDEEDEDEEEEGEEEDVSGEEEEDEEGYNDGEVDD 221
Query: 268 SADYNSLSEEERGSSRQR 285
D L EEERG R+R
Sbjct: 222 EEDEEELGEEERGQKRKR 239
>gi|5454088 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member B [Homo sapiens]
Length = 251
Score = 41.6 bits (96), Expect = 0.001
Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 229 DDQEPEDIYDDEDDENSENNWRNEYPEEESSDGDEDSRGSADYNSLSEEE 278
D++E ++ +DE+DE+ E+ E+ EE+ D DED G D + +SEEE
Sbjct: 166 DEEEEDEEGEDEEDEDDEDGEEEEFDEED--DEDEDVEGDEDDDEVSEEE 213
Score = 35.0 bits (79), Expect = 0.084
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 222 QEWELVNDDQEPEDIYDDEDD----ENSENNWRNEYPEEESSDGDEDSRGSADYNSLSEE 277
+E E +D E ED+ DEDD E E +E E+E D +E+ G + +
Sbjct: 186 EEEEFDEEDDEDEDVEGDEDDDEVSEEEEEFGLDEEDEDEDEDEEEEEGGKGEKRKRETD 245
Query: 278 ERG 280
+ G
Sbjct: 246 DEG 248
>gi|157743245 WD repeat domain 43 [Homo sapiens]
Length = 677
Score = 38.1 bits (87), Expect = 0.010
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 222 QEWELVNDDQEPEDIYDDE-DDENSENNWRNEYPEEESSDGDEDSRGSADYNSLSEEERG 280
Q+ +LV +++ E+ DDE D++SE+NW +E EE S+ DED + +EE G
Sbjct: 593 QKAKLVYEEESSEEESDDEIADKDSEDNW-DEDEEESESEKDEDVEEEDEDAEGKDEENG 651
Query: 281 SSRQRMWSKYPLDVQKEFGYDSPHDLDSD 309
R +KE DS DLD +
Sbjct: 652 EDRDTA-------SEKELNGDS--DLDPE 671
>gi|21361639 DIPB protein [Homo sapiens]
Length = 344
Score = 37.7 bits (86), Expect = 0.013
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 211 IENILSVQPYSQEWELVNDDQEPEDIYDDEDDENSENNWRNEYPEEESSDGDEDSRGSAD 270
IE+ + S+E ++ E E+ +DE DE SE + E +E+ S+ +ED++ +
Sbjct: 91 IESEAGEESESEEESESEEESETEEESEDESDEESEEDSEEEMEDEQESEAEEDNQEEGE 150
Query: 271 YNSLSEEERGS 281
+ E E S
Sbjct: 151 SEAEGETEAES 161
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 37.7 bits (86), Expect = 0.013
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 222 QEWELVNDDQEPEDIYDDEDDENSENNWRNEYPEEESSDGDEDS 265
+E E D +E +D DDE+DE E++ ++YPEE D D+ S
Sbjct: 144 EEEEEDGDAEETQDSEDDEEDEMEEDDDDSDYPEEMEDDDDDAS 187
Score = 28.5 bits (62), Expect = 7.9
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 236 IYDDEDDENSENNWRNEYPEEESSDGD-EDSRGSADYNSLSEEERGSSRQRMWSKYPLDV 294
+YDD + E E EEE DGD E+++ S D +EE S YP ++
Sbjct: 125 VYDDHESEEEEEEEDMVSEEEEEEDGDAEETQDSED-----DEEDEMEEDDDDSDYPEEM 179
Query: 295 QKE 297
+ +
Sbjct: 180 EDD 182
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 37.7 bits (86), Expect = 0.013
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 222 QEWELVNDDQEPEDIYDDEDDENSENNWRNEYPEEESSDGDEDS 265
+E E D +E +D DDE+DE E++ ++YPEE D D+ S
Sbjct: 144 EEEEEDGDAEETQDSEDDEEDEMEEDDDDSDYPEEMEDDDDDAS 187
Score = 28.5 bits (62), Expect = 7.9
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 236 IYDDEDDENSENNWRNEYPEEESSDGD-EDSRGSADYNSLSEEERGSSRQRMWSKYPLDV 294
+YDD + E E EEE DGD E+++ S D +EE S YP ++
Sbjct: 125 VYDDHESEEEEEEEDMVSEEEEEEDGDAEETQDSED-----DEEDEMEEDDDDSDYPEEM 179
Query: 295 QKE 297
+ +
Sbjct: 180 EDD 182
>gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member E isoform 1 [Homo sapiens]
Length = 268
Score = 37.7 bits (86), Expect = 0.013
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 194 DDYVYDIYYLETATPGWIENILSVQPYSQEWELVNDDQEPEDIYDDEDDENSENN----- 248
+DY I+ L ++ I + + QE D +E +D DEDDE E N
Sbjct: 129 EDYRESIFEL-------LQQITYLDGFDQEDNEAPDSEEEDDEDGDEDDEEEEENEAGPP 181
Query: 249 --WRNEYPEEESSDGDEDSRGSADYNSLSEEE 278
+ E EEE D DED + L E E
Sbjct: 182 EGYEEEEEEEEEEDEDEDEDEDEAGSELGEGE 213
Score = 28.5 bits (62), Expect = 7.9
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 219 PYSQEWELVNDDQEPEDIYDDEDDENSENNWRNE------YPEEESSDGDEDSRGSADYN 272
P E E +++E ED +DED+ SE E +EE D ++D +
Sbjct: 181 PEGYEEEEEEEEEEDEDEDEDEDEAGSELGEGEEEVGLSYLMKEEIQDEEDDDDYVEEGE 240
Query: 273 SLSEEERGSSR 283
EEE G R
Sbjct: 241 EEEEEEEGGLR 251
>gi|210147569 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 2 [Homo sapiens]
Length = 227
Score = 37.7 bits (86), Expect = 0.013
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 194 DDYVYDIYYLETATPGWIENILSVQPYSQEWELVNDDQEPEDIYDDEDDENSENN----- 248
+DY I+ L ++ I + + QE D +E +D DEDDE E N
Sbjct: 88 EDYRESIFEL-------LQQITYLDGFDQEDNEAPDSEEEDDEDGDEDDEEEEENEAGPP 140
Query: 249 --WRNEYPEEESSDGDEDSRGSADYNSLSEEE 278
+ E EEE D DED + L E E
Sbjct: 141 EGYEEEEEEEEEEDEDEDEDEDEAGSELGEGE 172
Score = 28.5 bits (62), Expect = 7.9
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 219 PYSQEWELVNDDQEPEDIYDDEDDENSENNWRNE------YPEEESSDGDEDSRGSADYN 272
P E E +++E ED +DED+ SE E +EE D ++D +
Sbjct: 140 PEGYEEEEEEEEEEDEDEDEDEDEAGSELGEGEEEVGLSYLMKEEIQDEEDDDDYVEEGE 199
Query: 273 SLSEEERGSSR 283
EEE G R
Sbjct: 200 EEEEEEEGGLR 210
>gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 3 [Homo sapiens]
Length = 220
Score = 37.7 bits (86), Expect = 0.013
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 194 DDYVYDIYYLETATPGWIENILSVQPYSQEWELVNDDQEPEDIYDDEDDENSENN----- 248
+DY I+ L ++ I + + QE D +E +D DEDDE E N
Sbjct: 81 EDYRESIFEL-------LQQITYLDGFDQEDNEAPDSEEEDDEDGDEDDEEEEENEAGPP 133
Query: 249 --WRNEYPEEESSDGDEDSRGSADYNSLSEEE 278
+ E EEE D DED + L E E
Sbjct: 134 EGYEEEEEEEEEEDEDEDEDEDEAGSELGEGE 165
Score = 28.5 bits (62), Expect = 7.9
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 219 PYSQEWELVNDDQEPEDIYDDEDDENSENNWRNE------YPEEESSDGDEDSRGSADYN 272
P E E +++E ED +DED+ SE E +EE D ++D +
Sbjct: 133 PEGYEEEEEEEEEEDEDEDEDEDEAGSELGEGEEEVGLSYLMKEEIQDEEDDDDYVEEGE 192
Query: 273 SLSEEERGSSR 283
EEE G R
Sbjct: 193 EEEEEEEGGLR 203
>gi|6912604 acidic nuclear phosphoprotein 32C [Homo sapiens]
Length = 234
Score = 37.4 bits (85), Expect = 0.017
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 218 QPYSQEWELVNDDQEPEDIYDDEDDENSENNWRNEYPEEESSDGDEDSRGSADYNSLSEE 277
+ Y ++ ++V D++ E+ +E+ E + + +E EE +DG+ D G D L EE
Sbjct: 173 EEYDEDAQVVEDEEGEEE---EEEGEEEDVSGGDEEDEEGYNDGEVD--GEEDEEELGEE 227
Query: 278 ERGSSRQ 284
ERG R+
Sbjct: 228 ERGQKRK 234
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 37.0 bits (84), Expect = 0.022
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 221 SQEWELVNDDQEPEDIYDDEDDENSENNWRNEYPE-EESSDGDEDSRGSADYNSLSEEER 279
SQ+ + DD D D+E+D++ + +Y E EE D DED G D S E
Sbjct: 1933 SQDGQGKGDDVIVIDSDDEEEDDDENDGEHEDYEEDEEDDDDDEDDTGMGDEGEDSNEGT 1992
Query: 280 GSS 282
GS+
Sbjct: 1993 GSA 1995
>gi|239756368 PREDICTED: similar to acidic (leucine-rich) nuclear
phosphoprotein 32 family, member B [Homo sapiens]
Length = 272
Score = 36.6 bits (83), Expect = 0.029
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 229 DDQEPEDIYDDEDDENSENNWRNEYPEEESSDGDEDSRGSADYNSLSEEE 278
D +E ++ +DE D +E+ E EEE D DED G D + +SEEE
Sbjct: 186 DKEEEDEEGEDEKDXENEDGEEEELDEEE--DEDEDVEGDDDKDEVSEEE 233
Score = 32.7 bits (73), Expect = 0.42
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 222 QEWELVNDDQEPEDIY-DDEDDENSENNWRNEYPEEESSDGDEDSRGSADYNSLSEEERG 280
+E EL ++ E ED+ DD+ DE SE EE D DED + E +G
Sbjct: 206 EEEELDEEEDEDEDVEGDDDKDEVSEEE------EEFGLDKDEDDEDEDEDEEEEESGKG 259
Query: 281 SSRQR 285
+R+R
Sbjct: 260 ENRKR 264
>gi|239750893 PREDICTED: similar to acidic (leucine-rich) nuclear
phosphoprotein 32 family, member B [Homo sapiens]
Length = 272
Score = 36.6 bits (83), Expect = 0.029
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 229 DDQEPEDIYDDEDDENSENNWRNEYPEEESSDGDEDSRGSADYNSLSEEE 278
D +E ++ +DE D +E+ E EEE D DED G D + +SEEE
Sbjct: 186 DKEEEDEEGEDEKDXENEDGEEEELDEEE--DEDEDVEGDDDKDEVSEEE 233
Score = 32.7 bits (73), Expect = 0.42
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 222 QEWELVNDDQEPEDIY-DDEDDENSENNWRNEYPEEESSDGDEDSRGSADYNSLSEEERG 280
+E EL ++ E ED+ DD+ DE SE EE D DED + E +G
Sbjct: 206 EEEELDEEEDEDEDVEGDDDKDEVSEEE------EEFGLDKDEDDEDEDEDEEEEESGKG 259
Query: 281 SSRQR 285
+R+R
Sbjct: 260 ENRKR 264
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 36.2 bits (82), Expect = 0.038
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 219 PYSQEWELVNDDQEPEDIYDDEDDENSENNWRNEYPEEESSDGDEDSRGSADYNSLSEEE 278
P S L + + ED +DEDDE+ + E ++E+ D ED S++ +S E E
Sbjct: 627 PKSSRTTLQSKSESEEDDEEDEDDEDED----EEEEDDENGDSSEDGGDSSESSSEDESE 682
Query: 279 RGSSRQ 284
G +
Sbjct: 683 DGDENE 688
Score = 33.9 bits (76), Expect = 0.19
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 225 ELVNDDQEPEDIYD-DEDDENSENNWRNE--------YPEEESSDGDEDSRGSADYNSLS 275
E DD+E ED D DE++E+ EN +E E+ES DGDE+ D +
Sbjct: 639 ESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDE 698
Query: 276 EEERGSSRQ 284
+++ +
Sbjct: 699 DDDEDEDNE 707
Score = 32.3 bits (72), Expect = 0.55
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 188 QEEQKHDDYVYDIYYLETATPGWIENILSVQPYSQEWELVNDDQEPEDIYDDEDDENSEN 247
++E++ DD D ++ G + S + S++ + +D E ED DDEDD+ E+
Sbjct: 653 EDEEEEDDENGD-----SSEDGGDSSESSSEDESEDGDENEEDDEDED--DDEDDDEDED 705
Query: 248 NWRNEYPEEESSDGDEDSRGS 268
N SS GD S
Sbjct: 706 NESEGSSSSSSSSGDSSDSDS 726
Score = 29.6 bits (65), Expect = 3.5
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 229 DDQEPEDIYDDED-DENSENNWRNEYPEEESSDGDEDSRGSADYNSLSEEERGS 281
D E + ED DEN E++ + E++ D D +S GS+ +S S + S
Sbjct: 671 DSSESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNESEGSSSSSSSSGDSSDS 724
Score = 28.5 bits (62), Expect = 7.9
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 234 EDIYDDEDDENSENNWRNEYPEEESSDGDEDSRGSADYNSLSEEERGSS 282
E +DE ++ EN ++ E++ D DED ++ +S S G S
Sbjct: 674 ESSSEDESEDGDENE-EDDEDEDDDEDDDEDEDNESEGSSSSSSSSGDS 721
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 36.2 bits (82), Expect = 0.038
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 219 PYSQEWELVNDDQEPEDIYDDEDDENSENNWRNEYPEEESSDGDEDSRGSADYNSLSEEE 278
P S L + + ED +DEDDE+ + E ++E+ D ED S++ +S E E
Sbjct: 627 PKSSRTTLQSKSESEEDDEEDEDDEDED----EEEEDDENGDSSEDGGDSSESSSEDESE 682
Query: 279 RGSSRQ 284
G +
Sbjct: 683 DGDENE 688
Score = 33.9 bits (76), Expect = 0.19
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 225 ELVNDDQEPEDIYD-DEDDENSENNWRNE--------YPEEESSDGDEDSRGSADYNSLS 275
E DD+E ED D DE++E+ EN +E E+ES DGDE+ D +
Sbjct: 639 ESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDE 698
Query: 276 EEERGSSRQ 284
+++ +
Sbjct: 699 DDDEDEDNE 707
Score = 32.3 bits (72), Expect = 0.55
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 188 QEEQKHDDYVYDIYYLETATPGWIENILSVQPYSQEWELVNDDQEPEDIYDDEDDENSEN 247
++E++ DD D ++ G + S + S++ + +D E ED DDEDD+ E+
Sbjct: 653 EDEEEEDDENGD-----SSEDGGDSSESSSEDESEDGDENEEDDEDED--DDEDDDEDED 705
Query: 248 NWRNEYPEEESSDGDEDSRGS 268
N SS GD S
Sbjct: 706 NESEGSSSSSSSSGDSSDSDS 726
Score = 29.6 bits (65), Expect = 3.5
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 229 DDQEPEDIYDDED-DENSENNWRNEYPEEESSDGDEDSRGSADYNSLSEEERGS 281
D E + ED DEN E++ + E++ D D +S GS+ +S S + S
Sbjct: 671 DSSESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNESEGSSSSSSSSGDSSDS 724
Score = 28.5 bits (62), Expect = 7.9
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 234 EDIYDDEDDENSENNWRNEYPEEESSDGDEDSRGSADYNSLSEEERGSS 282
E +DE ++ EN ++ E++ D DED ++ +S S G S
Sbjct: 674 ESSSEDESEDGDENE-EDDEDEDDDEDDDEDEDNESEGSSSSSSSSGDS 721
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 36.2 bits (82), Expect = 0.038
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 219 PYSQEWELVNDDQEPEDIYDDEDDENSENNWRNEYPEEESSDGDEDSRGSADYNSLSEEE 278
P S L + + ED +DEDDE+ + E ++E+ D ED S++ +S E E
Sbjct: 664 PKSSRTTLQSKSESEEDDEEDEDDEDED----EEEEDDENGDSSEDGGDSSESSSEDESE 719
Query: 279 RGSSRQ 284
G +
Sbjct: 720 DGDENE 725
Score = 33.9 bits (76), Expect = 0.19
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 225 ELVNDDQEPEDIYD-DEDDENSENNWRNE--------YPEEESSDGDEDSRGSADYNSLS 275
E DD+E ED D DE++E+ EN +E E+ES DGDE+ D +
Sbjct: 676 ESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDE 735
Query: 276 EEERGSSRQ 284
+++ +
Sbjct: 736 DDDEDEDNE 744
Score = 32.3 bits (72), Expect = 0.55
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 188 QEEQKHDDYVYDIYYLETATPGWIENILSVQPYSQEWELVNDDQEPEDIYDDEDDENSEN 247
++E++ DD D ++ G + S + S++ + +D E ED DDEDD+ E+
Sbjct: 690 EDEEEEDDENGD-----SSEDGGDSSESSSEDESEDGDENEEDDEDED--DDEDDDEDED 742
Query: 248 NWRNEYPEEESSDGDEDSRGS 268
N SS GD S
Sbjct: 743 NESEGSSSSSSSSGDSSDSDS 763
Score = 29.6 bits (65), Expect = 3.5
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 229 DDQEPEDIYDDED-DENSENNWRNEYPEEESSDGDEDSRGSADYNSLSEEERGS 281
D E + ED DEN E++ + E++ D D +S GS+ +S S + S
Sbjct: 708 DSSESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNESEGSSSSSSSSGDSSDS 761
Score = 28.5 bits (62), Expect = 7.9
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 234 EDIYDDEDDENSENNWRNEYPEEESSDGDEDSRGSADYNSLSEEERGSS 282
E +DE ++ EN ++ E++ D DED ++ +S S G S
Sbjct: 711 ESSSEDESEDGDENE-EDDEDEDDDEDDDEDEDNESEGSSSSSSSSGDS 758
>gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo
sapiens]
Length = 2168
Score = 36.2 bits (82), Expect = 0.038
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 219 PYSQEWELVNDDQEPEDIYDDE--------DDENSENNWRNEYPEEESSDGDEDSRGSAD 270
P S++ E N+D+E +D +DE DD SE++ +E E S + D+D + +
Sbjct: 599 PSSKDSEDSNEDEEEDDEEEDEEDDEDDESDDSQSESDSNSESDTEGSEEEDDDDKDQDE 658
Query: 271 YNSLSEEERGSSR 283
+S +E E+ S +
Sbjct: 659 SDSDTEGEKTSMK 671
Score = 30.8 bits (68), Expect = 1.6
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 227 VNDDQEPEDIYDDEDDENSENNWRNEYPEEESSDGDEDSRGSADYNSLSEEE 278
+ ++ ED +DE++++ E E E++ D +DS+ +D NS S+ E
Sbjct: 598 IPSSKDSEDSNEDEEEDDEE-----EDEEDDEDDESDDSQSESDSNSESDTE 644
Score = 28.9 bits (63), Expect = 6.0
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 228 NDDQEPEDIYDDEDDENSENNWRNEYPEEESSDGDEDSRGSADYNS 273
+ D E I + D+ E+ + EES D D DS A + S
Sbjct: 252 SSDTSSEGISSSDSDDLEEDEEEEDQSIEESEDDDSDSESEAQHKS 297
Score = 28.9 bits (63), Expect = 6.0
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 228 NDDQEPEDIYDDEDDENSENNWRNEYPEEESSDGDEDSRGSADYNSLSEEERGSSRQRMW 287
+DD + D DEDDE+ E+ + + + + +++ +A L ++ S+Q+
Sbjct: 1301 DDDDDDSDDQGDEDDEDEEDKEDKKGKKTDICEDEDEGDQAASVEELEKQIEKLSKQQSQ 1360
Query: 288 SKYPLDVQKEFGYDSPHDLDS 308
+ L +D+ H L S
Sbjct: 1361 YRRKL-------FDASHSLRS 1374
>gi|118130872 mesoderm induction early response 1 isoform f [Homo
sapiens]
Length = 433
Score = 35.8 bits (81), Expect = 0.049
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 8/141 (5%)
Query: 145 EGEPEAASAGSCKTSDPDVILCNSVELIRERLTVSEDGPGVRRQEEQKHDDYVYDIYYLE 204
E E++S G TSD + + + L D +EE + + +
Sbjct: 3 EPSVESSSPGGSATSDD-----HEFDPSADMLVHDFDDERTLEEEEMMEGETNFSSEIED 57
Query: 205 TATPGW--IENILSVQPYSQEWELVNDDQEPEDIYDD-EDDENSENNWRNEYPEEESSDG 261
A G I +LS+ Y L +D+E E+ ++ EDDE+++N+ + E +
Sbjct: 58 LAREGDMPIHELLSLYGYGSTVRLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEEN 117
Query: 262 DEDSRGSADYNSLSEEERGSS 282
+DS G D S ++ S
Sbjct: 118 IKDSSGQEDETQSSNDDPSQS 138
>gi|118130815 mesoderm induction early response 1 isoform c [Homo
sapiens]
Length = 512
Score = 35.8 bits (81), Expect = 0.049
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 8/141 (5%)
Query: 145 EGEPEAASAGSCKTSDPDVILCNSVELIRERLTVSEDGPGVRRQEEQKHDDYVYDIYYLE 204
E E++S G TSD + + + L D +EE + + +
Sbjct: 3 EPSVESSSPGGSATSDD-----HEFDPSADMLVHDFDDERTLEEEEMMEGETNFSSEIED 57
Query: 205 TATPGW--IENILSVQPYSQEWELVNDDQEPEDIYDD-EDDENSENNWRNEYPEEESSDG 261
A G I +LS+ Y L +D+E E+ ++ EDDE+++N+ + E +
Sbjct: 58 LAREGDMPIHELLSLYGYGSTVRLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEEN 117
Query: 262 DEDSRGSADYNSLSEEERGSS 282
+DS G D S ++ S
Sbjct: 118 IKDSSGQEDETQSSNDDPSQS 138
>gi|225735631 mesoderm induction early response 1 isoform g [Homo
sapiens]
Length = 470
Score = 35.4 bits (80), Expect = 0.065
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 8/137 (5%)
Query: 149 EAASAGSCKTSDPDVILCNSVELIRERLTVSEDGPGVRRQEEQKHDDYVYDIYYLETATP 208
E++S G TSD + + + L D +EE + + + A
Sbjct: 24 ESSSPGGSATSDD-----HEFDPSADMLVHDFDDERTLEEEEMMEGETNFSSEIEDLARE 78
Query: 209 GW--IENILSVQPYSQEWELVNDDQEPEDIYDD-EDDENSENNWRNEYPEEESSDGDEDS 265
G I +LS+ Y L +D+E E+ ++ EDDE+++N+ + E + +DS
Sbjct: 79 GDMPIHELLSLYGYGSTVRLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDS 138
Query: 266 RGSADYNSLSEEERGSS 282
G D S ++ S
Sbjct: 139 SGQEDETQSSNDDPSQS 155
>gi|225735615 mesoderm induction early response 1 isoform a [Homo
sapiens]
Length = 529
Score = 35.4 bits (80), Expect = 0.065
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 8/137 (5%)
Query: 149 EAASAGSCKTSDPDVILCNSVELIRERLTVSEDGPGVRRQEEQKHDDYVYDIYYLETATP 208
E++S G TSD + + + L D +EE + + + A
Sbjct: 24 ESSSPGGSATSDD-----HEFDPSADMLVHDFDDERTLEEEEMMEGETNFSSEIEDLARE 78
Query: 209 GW--IENILSVQPYSQEWELVNDDQEPEDIYDD-EDDENSENNWRNEYPEEESSDGDEDS 265
G I +LS+ Y L +D+E E+ ++ EDDE+++N+ + E + +DS
Sbjct: 79 GDMPIHELLSLYGYGSTVRLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDS 138
Query: 266 RGSADYNSLSEEERGSS 282
G D S ++ S
Sbjct: 139 SGQEDETQSSNDDPSQS 155
>gi|225735612 mesoderm induction early response 1 isoform e [Homo
sapiens]
Length = 486
Score = 35.4 bits (80), Expect = 0.065
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 8/137 (5%)
Query: 149 EAASAGSCKTSDPDVILCNSVELIRERLTVSEDGPGVRRQEEQKHDDYVYDIYYLETATP 208
E++S G TSD + + + L D +EE + + + A
Sbjct: 60 ESSSPGGSATSDD-----HEFDPSADMLVHDFDDERTLEEEEMMEGETNFSSEIEDLARE 114
Query: 209 GW--IENILSVQPYSQEWELVNDDQEPEDIYDD-EDDENSENNWRNEYPEEESSDGDEDS 265
G I +LS+ Y L +D+E E+ ++ EDDE+++N+ + E + +DS
Sbjct: 115 GDMPIHELLSLYGYGSTVRLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDS 174
Query: 266 RGSADYNSLSEEERGSS 282
G D S ++ S
Sbjct: 175 SGQEDETQSSNDDPSQS 191
>gi|225735610 mesoderm induction early response 1 isoform d [Homo
sapiens]
Length = 450
Score = 35.4 bits (80), Expect = 0.065
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 8/137 (5%)
Query: 149 EAASAGSCKTSDPDVILCNSVELIRERLTVSEDGPGVRRQEEQKHDDYVYDIYYLETATP 208
E++S G TSD + + + L D +EE + + + A
Sbjct: 24 ESSSPGGSATSDD-----HEFDPSADMLVHDFDDERTLEEEEMMEGETNFSSEIEDLARE 78
Query: 209 GW--IENILSVQPYSQEWELVNDDQEPEDIYDD-EDDENSENNWRNEYPEEESSDGDEDS 265
G I +LS+ Y L +D+E E+ ++ EDDE+++N+ + E + +DS
Sbjct: 79 GDMPIHELLSLYGYGSTVRLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDS 138
Query: 266 RGSADYNSLSEEERGSS 282
G D S ++ S
Sbjct: 139 SGQEDETQSSNDDPSQS 155
>gi|225735607 mesoderm induction early response 1 isoform b [Homo
sapiens]
Length = 565
Score = 35.4 bits (80), Expect = 0.065
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 8/137 (5%)
Query: 149 EAASAGSCKTSDPDVILCNSVELIRERLTVSEDGPGVRRQEEQKHDDYVYDIYYLETATP 208
E++S G TSD + + + L D +EE + + + A
Sbjct: 60 ESSSPGGSATSDD-----HEFDPSADMLVHDFDDERTLEEEEMMEGETNFSSEIEDLARE 114
Query: 209 GW--IENILSVQPYSQEWELVNDDQEPEDIYDD-EDDENSENNWRNEYPEEESSDGDEDS 265
G I +LS+ Y L +D+E E+ ++ EDDE+++N+ + E + +DS
Sbjct: 115 GDMPIHELLSLYGYGSTVRLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDS 174
Query: 266 RGSADYNSLSEEERGSS 282
G D S ++ S
Sbjct: 175 SGQEDETQSSNDDPSQS 191
>gi|225735605 mesoderm induction early response 1 isoform a [Homo
sapiens]
Length = 529
Score = 35.4 bits (80), Expect = 0.065
Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 8/137 (5%)
Query: 149 EAASAGSCKTSDPDVILCNSVELIRERLTVSEDGPGVRRQEEQKHDDYVYDIYYLETATP 208
E++S G TSD + + + L D +EE + + + A
Sbjct: 24 ESSSPGGSATSDD-----HEFDPSADMLVHDFDDERTLEEEEMMEGETNFSSEIEDLARE 78
Query: 209 GW--IENILSVQPYSQEWELVNDDQEPEDIYDD-EDDENSENNWRNEYPEEESSDGDEDS 265
G I +LS+ Y L +D+E E+ ++ EDDE+++N+ + E + +DS
Sbjct: 79 GDMPIHELLSLYGYGSTVRLPEEDEEEEEEEEEGEDDEDADNDDNSGCSGENKEENIKDS 138
Query: 266 RGSADYNSLSEEERGSS 282
G D S ++ S
Sbjct: 139 SGQEDETQSSNDDPSQS 155
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.127 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,542,878
Number of Sequences: 37866
Number of extensions: 601638
Number of successful extensions: 4807
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 142
Number of HSP's that attempted gapping in prelim test: 3240
Number of HSP's gapped (non-prelim): 1041
length of query: 309
length of database: 18,247,518
effective HSP length: 102
effective length of query: 207
effective length of database: 14,385,186
effective search space: 2977733502
effective search space used: 2977733502
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.