Guide to the Human Genome
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Name: SLC7A6OS Sequence: fasta or formatted (309aa) NCBI GI: 14149861
Description:

solute carrier family 7, member 6 opposite strand

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         22           2
 C cysteine            1.3          4           1
 D aspartate           8.4         26           2
 E glutamate          13.6         42           3
 F phenylalanine       1.0          3           1
 G glycine             4.9         15           1
 H histidine           1.3          4           1
 I isoleucine          1.9          6           1
 K lysine              2.6          8           1
 L leucine             8.1         25           2
 M methionine          0.6          2           1
 N asparagine          4.2         13           2
 P proline             4.5         14           1
 Q glutamine           4.9         15           2
 R arginine            9.4         29           2
 S serine             11.0         34           2
 T threonine           3.2         10           2
 V valine              6.8         21           1
 W tryptophan          1.3          4           1
 Y tyrosine            3.9         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 7, member 6 opposite strand [H... 
EIF5B                 0.034   eukaryotic translation initiation factor 5B 
KIAA1429              0.030   hypothetical protein LOC25962 isoform 1 
KIAA1429              0.030   hypothetical protein LOC25962 isoform 2 
ZBTB7C                0.029   zinc finger and BTB domain containing 7C 
ANP32A                0.029   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
ANP32B                0.029   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
WDR43                 0.022   WD repeat domain 43 
TRIM44                0.022   DIPB protein 
BPTF                  0.022   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.022   bromodomain PHD finger transcription factor isoform ...
ANP32E                0.022   acidic (leucine-rich) nuclear phosphoprotein 32 fami...
ANP32E                0.022   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
ANP32E                0.022   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
ANP32C                0.020   acidic nuclear phosphoprotein 32C 
TPR                   0.020   nuclear pore complex-associated protein TPR 
LOC647020             0.020   PREDICTED: similar to acidic (leucine-rich) nuclear...
LOC647020             0.020   PREDICTED: similar to acidic (leucine-rich) nuclear...
UBTF                  0.018   upstream binding transcription factor, RNA polymera...
UBTF                  0.018   upstream binding transcription factor, RNA polymera...
UBTF                  0.018   upstream binding transcription factor, RNA polymerase...
BAZ2B                 0.018   bromodomain adjacent to zinc finger domain, 2B [Homo...
MIER1                 0.018   mesoderm induction early response 1 isoform f [Homo...
MIER1                 0.018   mesoderm induction early response 1 isoform c [Homo...
MIER1                 0.017   mesoderm induction early response 1 isoform g [Homo...
MIER1                 0.017   mesoderm induction early response 1 isoform a [Homo...
MIER1                 0.017   mesoderm induction early response 1 isoform e [Homo...
MIER1                 0.017   mesoderm induction early response 1 isoform d [Homo...
MIER1                 0.017   mesoderm induction early response 1 isoform b [Homo...
MIER1                 0.017   mesoderm induction early response 1 isoform a [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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