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Search of human proteins with 8922764
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8922764 MRG-binding protein [Homo sapiens]
(204 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8922764 MRG-binding protein [Homo sapiens] 415 e-116
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 35 0.058
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens] 35 0.058
gi|23308511 zinc finger protein-3 [Homo sapiens] 35 0.058
gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens] 34 0.075
gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens] 34 0.075
gi|38569394 inhibitor of kappa light polypeptide gene enhancer i... 34 0.098
gi|31543452 PX domain containing serine/threonine kinase [Homo s... 34 0.098
gi|27262622 neuron navigator 1 [Homo sapiens] 33 0.13
gi|93141033 PAX interacting protein 1 [Homo sapiens] 33 0.17
gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens] 33 0.17
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 33 0.22
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 33 0.22
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 33 0.22
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 33 0.22
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 33 0.22
gi|210032580 SET domain containing 1B [Homo sapiens] 33 0.22
gi|42718020 retinitis pigmentosa 9 [Homo sapiens] 33 0.22
gi|28274705 family with sequence similarity 9, member A [Homo sa... 33 0.22
gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens] 33 0.22
gi|21735569 claspin [Homo sapiens] 32 0.29
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 32 0.29
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 32 0.29
gi|127138957 zinc finger protein 537 [Homo sapiens] 32 0.29
gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo sapi... 32 0.37
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 32 0.37
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 32 0.37
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 32 0.37
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 32 0.37
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 32 0.37
>gi|8922764 MRG-binding protein [Homo sapiens]
Length = 204
Score = 415 bits (1067), Expect = e-116
Identities = 204/204 (100%), Positives = 204/204 (100%)
Query: 1 MGEAEVGGGGAAGDKGPGEAATSPAEETVVWSPEVEVCLFHAMLGHKPVGVNRHFHMICI 60
MGEAEVGGGGAAGDKGPGEAATSPAEETVVWSPEVEVCLFHAMLGHKPVGVNRHFHMICI
Sbjct: 1 MGEAEVGGGGAAGDKGPGEAATSPAEETVVWSPEVEVCLFHAMLGHKPVGVNRHFHMICI 60
Query: 61 RDKFSQNIGRQVPSKVIWDHLSTMYDMQALHESEILPFPNPERNFVLPEEIIQEVREGKV 120
RDKFSQNIGRQVPSKVIWDHLSTMYDMQALHESEILPFPNPERNFVLPEEIIQEVREGKV
Sbjct: 61 RDKFSQNIGRQVPSKVIWDHLSTMYDMQALHESEILPFPNPERNFVLPEEIIQEVREGKV 120
Query: 121 MIEEEMKEEMKEDVDPHNGADDVFSSSGSLGKASEKSSKDKEKNSSDLGCKEGADKRKRS 180
MIEEEMKEEMKEDVDPHNGADDVFSSSGSLGKASEKSSKDKEKNSSDLGCKEGADKRKRS
Sbjct: 121 MIEEEMKEEMKEDVDPHNGADDVFSSSGSLGKASEKSSKDKEKNSSDLGCKEGADKRKRS 180
Query: 181 RVTDKVLTANSNPSSPSAAKRRRT 204
RVTDKVLTANSNPSSPSAAKRRRT
Sbjct: 181 RVTDKVLTANSNPSSPSAAKRRRT 204
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 34.7 bits (78), Expect = 0.058
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 108 PEEIIQEVREGKVMIEEEMKEE--MKEDVDPHNGADDVFSSSGSLGKASEKSSKDKEKNS 165
P I++EV + + EEE ++E K +D DD S +L + E+ S K+ N
Sbjct: 141 PASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSN- 199
Query: 166 SDLGCKEGADKRKRSRVTDKVLTANSNPSSPSAAKRR 202
+R RS+ ++S SSPS+++ R
Sbjct: 200 ----------RRSRSKSRSSHSRSSSRSSSPSSSRSR 226
>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
Length = 320
Score = 34.7 bits (78), Expect = 0.058
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 108 PEEIIQEVREGKVMIEEEMKEE--MKEDVDPHNGADDVFSSSGSLGKASEKSSKDKEKNS 165
P I++EV + + EEE ++E K +D DD S +L + E+ S K+ N
Sbjct: 141 PASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSN- 199
Query: 166 SDLGCKEGADKRKRSRVTDKVLTANSNPSSPSAAKRR 202
+R RS+ ++S SSPS+++ R
Sbjct: 200 ----------RRSRSKSRSSHSRSSSRSSSPSSSRSR 226
>gi|23308511 zinc finger protein-3 [Homo sapiens]
Length = 502
Score = 34.7 bits (78), Expect = 0.058
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 121 MIEEEMKEEMKEDVDPHNGADDVFSSSGSLGKASEKSSKDKEKNSSDLGC 170
M+E +E M+E ++ + + F S + K S S KD+E N S+ GC
Sbjct: 46 MLEGHSRESMEEVIEQMSPQERDFPSGLMIFKKSPSSEKDRENNESERGC 95
>gi|253970456 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 34.3 bits (77), Expect = 0.075
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 123 EEEMKEEMKEDVDPHNGADDVFSSSGSLGKASEKSSKD-KEKNSSDLGC-----KEGADK 176
E+++ +E +E+V P +++ S S SEK S+D E+ + G +EG++K
Sbjct: 522 EDDLNKESEEEVGPTKESEEDDSEKESDEDCSEKQSEDGSEREFEENGLEKDLDEEGSEK 581
Query: 177 RKRSRVTDKVLTANSNPSS 195
V DK L N + +S
Sbjct: 582 ELHENVLDKELEENDSENS 600
>gi|21361437 HIV-1 Tat specific factor 1 [Homo sapiens]
Length = 755
Score = 34.3 bits (77), Expect = 0.075
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 123 EEEMKEEMKEDVDPHNGADDVFSSSGSLGKASEKSSKD-KEKNSSDLGC-----KEGADK 176
E+++ +E +E+V P +++ S S SEK S+D E+ + G +EG++K
Sbjct: 522 EDDLNKESEEEVGPTKESEEDDSEKESDEDCSEKQSEDGSEREFEENGLEKDLDEEGSEK 581
Query: 177 RKRSRVTDKVLTANSNPSS 195
V DK L N + +S
Sbjct: 582 ELHENVLDKELEENDSENS 600
>gi|38569394 inhibitor of kappa light polypeptide gene enhancer in
B-cells, kinase complex-associated protein [Homo sapiens]
Length = 1332
Score = 33.9 bits (76), Expect = 0.098
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 119 KVMIEEEMKEEMKE----DVDPHNGADDVFSSSGSLGKASEKSSKDKEKNSSDLGCKEGA 174
++++ E+KE+ ++ D PH D+FS + S+ SE S K NS + +
Sbjct: 1137 RLLVVRELKEQAQQAGLDDEVPHGQESDLFSETSSVVSGSEMSGKYSHSNSR-ISARSSK 1195
Query: 175 DKRKRSR 181
++RK R
Sbjct: 1196 NRRKAER 1202
>gi|31543452 PX domain containing serine/threonine kinase [Homo
sapiens]
Length = 578
Score = 33.9 bits (76), Expect = 0.098
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
Query: 93 SEILPFPNPERNFVLPEEIIQEVREGKVMIEEEMKEEMKE--------DVDPHNGADDVF 144
S++L + + F +P ++ + +R K IE+ + EE K+ H+G+++
Sbjct: 397 SDVLLTTSEKPQFKIPTKLKEALRIAKECIEKRLIEEQKQIHQHRRLTRAQSHHGSEEER 456
Query: 145 SSSGSLGKASEKSSKDKEKNSSDLGCKEGADKRKRSRVTDKVLTANSNPSSPSAA 199
L A +KS + +NS + K LT+ S+P+ PS +
Sbjct: 457 KKRKIL--ARKKSKRSALENSEEHSAKYSNSNNSAGSGASSPLTSPSSPTPPSTS 509
>gi|27262622 neuron navigator 1 [Homo sapiens]
Length = 1874
Score = 33.5 bits (75), Expect = 0.13
Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 41/144 (28%)
Query: 61 RDKFSQNIGRQVPSKVIWDHLSTMYDMQALHESEILPFPNPERNFVLPEEIIQEVREGKV 120
R +S + + PSK+ H+S + +++L E+ +++ G +
Sbjct: 351 RAHYSHTMPMRSPSKL--SHISRLELVESLDSDEV------------------DLKSGYM 390
Query: 121 MIEEEMKEEMKEDVDPHNGADDVFSSSGSLGKASEKSSKDKEKNSSDLGCKEGADKRKRS 180
+ M + M ED D G D+ S S L AS+ S ++ SS L
Sbjct: 391 SDSDLMGKTMTEDDDITTGWDESSSISSGLSDASDNLSSEEFNASSSL------------ 438
Query: 181 RVTDKVLTANSNPSSPSAAKRRRT 204
NS PS+P+A++R T
Sbjct: 439 ---------NSLPSTPTASRRNST 453
>gi|93141033 PAX interacting protein 1 [Homo sapiens]
Length = 1069
Score = 33.1 bits (74), Expect = 0.17
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 119 KVMIEEEMKEEMKEDVDPHNGADDVFSSSGSLGKASEKSSKDKEKNSSDLGCKEGADKRK 178
+++I EE +EE +E+ + N D S + G EKSS + S G ++ + K
Sbjct: 184 RLIIYEEEEEEEEEEEEVENEEQD----SQNEGSTDEKSSPASSQEGSPSGDQQFSPKSN 239
Query: 179 RSRVTDKVLTANSNPSSPSAAKR 201
+ +++ +S+ SSP +R
Sbjct: 240 TEKSKGELMFDDSSDSSPEKQER 262
>gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]
Length = 439
Score = 33.1 bits (74), Expect = 0.17
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 123 EEEMKEEMKEDVDPHNGADDVFSSSGSLGKASEKSSKDKEKNSSDLGCKEGADKRKRSRV 182
+E+ ++E+K+D P N S+SG+ S + +K S K KR RSR
Sbjct: 23 DEQQRKEVKKDY-PSNTTSST-SNSGNETSGSSTIGETSKKKRSRSHNKSRDRKRSRSRD 80
Query: 183 TDKVLTANSNPSSPSAAKRRRT 204
D+ NS SP R R+
Sbjct: 81 RDRYRRRNSRSRSPGRQCRHRS 102
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 32.7 bits (73), Expect = 0.22
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 123 EEEMKEEMKEDVDPHNGADDVFSSSGSLGKASEKSSKDKEKNSSDLGCKEGADKRKRSRV 182
++E +EE+++ + G D S K S+K KDKEK KE K K++
Sbjct: 1338 KDEPEEELQKGMGTVEGGDQSNPKSKKEKKKSDKRKKDKEK-------KEKKKKAKKAST 1390
Query: 183 TDKVLTANSNPSSPSAAKRRRT 204
D + +PS K+++T
Sbjct: 1391 KD-----SESPSQKKKKKKKKT 1407
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 32.7 bits (73), Expect = 0.22
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 123 EEEMKEEMKEDVDPHNGADDVFSSSGSLGKASEKSSKDKEKNSSDLGCKEGADKRKRSRV 182
++E +EE+++ + G D S K S+K KDKEK KE K K++
Sbjct: 1377 KDEPEEELQKGMGTVEGGDQSNPKSKKEKKKSDKRKKDKEK-------KEKKKKAKKAST 1429
Query: 183 TDKVLTANSNPSSPSAAKRRRT 204
D + +PS K+++T
Sbjct: 1430 KD-----SESPSQKKKKKKKKT 1446
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 32.7 bits (73), Expect = 0.22
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 123 EEEMKEEMKEDVDPHNGADDVFSSSGSLGKASEKSSKDKEKNSSDLGCKEGADKRKRSRV 182
++E +EE+++ + G D S K S+K KDKEK KE K K++
Sbjct: 1414 KDEPEEELQKGMGTVEGGDQSNPKSKKEKKKSDKRKKDKEK-------KEKKKKAKKAST 1466
Query: 183 TDKVLTANSNPSSPSAAKRRRT 204
D + +PS K+++T
Sbjct: 1467 KD-----SESPSQKKKKKKKKT 1483
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b [Homo
sapiens]
Length = 1411
Score = 32.7 bits (73), Expect = 0.22
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 123 EEEMKEEMKEDVDPHNGADDVFSSSGSLGKASEKSSKDKEKNSSDLGCKEGADKRKRSRV 182
++E +EE+++ + G D S K S+K KDKEK KE K K++
Sbjct: 1337 KDEPEEELQKGMGTVEGGDQSNPKSKKEKKKSDKRKKDKEK-------KEKKKKAKKAST 1389
Query: 183 TDKVLTANSNPSSPSAAKRRRT 204
D + +PS K+++T
Sbjct: 1390 KD-----SESPSQKKKKKKKKT 1406
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a [Homo
sapiens]
Length = 1450
Score = 32.7 bits (73), Expect = 0.22
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 123 EEEMKEEMKEDVDPHNGADDVFSSSGSLGKASEKSSKDKEKNSSDLGCKEGADKRKRSRV 182
++E +EE+++ + G D S K S+K KDKEK KE K K++
Sbjct: 1376 KDEPEEELQKGMGTVEGGDQSNPKSKKEKKKSDKRKKDKEK-------KEKKKKAKKAST 1428
Query: 183 TDKVLTANSNPSSPSAAKRRRT 204
D + +PS K+++T
Sbjct: 1429 KD-----SESPSQKKKKKKKKT 1445
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 32.7 bits (73), Expect = 0.22
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 123 EEEMKEEMKEDVDPHNGADDVFSSSG-----SLGKASEKSSKDKEKNSSDLGCKEGADKR 177
EEE +EE +E+ D + +DD S +L +ASEK D ++ + A+
Sbjct: 1051 EEEAEEEEEEEDDDDDDSDDRDESENDDEDTALSEASEKDEGDSDEEETVSIVTSKAEAT 1110
Query: 178 KRSRVTDKVLTANSNPSSPSAAK 200
S ++ +S+ SSPS+++
Sbjct: 1111 SSSESSESSEFESSSESSPSSSE 1133
>gi|42718020 retinitis pigmentosa 9 [Homo sapiens]
Length = 221
Score = 32.7 bits (73), Expect = 0.22
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 115 VREGKVMIEEEMKEEMKEDVDPHNGADDVFSSSGSLGKASEKSSKDKEKNSSDLGCKEGA 174
+R+ K ++ +++K+ ++ +D SSS S GK K K KEK+ KE
Sbjct: 145 IRDNKRHEKDVRIQQLKQLLEDSTSDEDRSSSSSSEGKEKHKKKKKKEKHKKRK--KEKK 202
Query: 175 DKRKRSRVTDK 185
K+KR + K
Sbjct: 203 KKKKRKHKSSK 213
>gi|28274705 family with sequence similarity 9, member A [Homo
sapiens]
Length = 332
Score = 32.7 bits (73), Expect = 0.22
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 109 EEIIQEVREGKVMIEEEMKEEMKEDVDPHNGADD-VFSSSGSLGKASEKSSKDKEKNSSD 167
E I+ E E + EEE KEE +E+ + G ++ G G+ +E+ +++E+ +
Sbjct: 215 EVIVVEDEEEEEKEEEEEKEEEEEEGEEEGGGEEGEEGGGGGEGEETEEEEEEEEEEEEE 274
Query: 168 LGCKEGADKRKR 179
K +K+KR
Sbjct: 275 EQIKAFQEKQKR 286
>gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens]
Length = 1564
Score = 32.7 bits (73), Expect = 0.22
Identities = 25/107 (23%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
Query: 100 NPERNFVLPEEIIQEVREGKVM-----IEEEMKEEMKEDVDPHNGADDVFSSSGSLGKAS 154
N + N+ E+ E++ K+ +E+E E+ +E + + +V S S +
Sbjct: 153 NGDINYDYVHELSLEMKRQKIQRELMKLEQENMEKREEIIIKKEVSPEVVRSKLSPSPSL 212
Query: 155 EKSSKDKEKNSSDLGCKEGADKRKRSRVTDKVLTANSNPSSPSAAKR 201
KSSK ++ SS RK S V+ +L N + + K+
Sbjct: 213 RKSSKSPKRKSSPKSSSASKKDRKTSAVSSPLLDQQRNSKTNQSKKK 259
Score = 30.8 bits (68), Expect = 0.83
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 125 EMKEEMKEDVDPHNGADDVFSSSGSLGKAS---EKSSKDKEKNSSDLGC-KEGADKRKRS 180
E +EE++ED +P +G D+ S + S +S K + ++S D G DK ++
Sbjct: 802 EKREEIREDRNPRDGHDERKSKKRYRNEGSPSPRQSPKRRREHSPDSDAYNSGDDKNEKH 861
Query: 181 RVTDKVLTANSNPS-SPS 197
R+ +V+ + S SPS
Sbjct: 862 RLLSQVVRPQESRSLSPS 879
Score = 28.5 bits (62), Expect = 4.1
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 112 IQEVREGKVMIEEEMKEEMKEDVDPHNGADDVFSSSGSLGKASEKSSKDKEKNSSDLGCK 171
I++ +E V IE E ED VFS K S + + K K SD+ +
Sbjct: 967 IKKKKEDDVGIERGNIETTSED-------GQVFSPKKGQKKKSIEKKRKKSKGDSDISDE 1019
Query: 172 EGADKRKRSR 181
E A + K+ R
Sbjct: 1020 EAAQQSKKKR 1029
>gi|21735569 claspin [Homo sapiens]
Length = 1339
Score = 32.3 bits (72), Expect = 0.29
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 109 EEIIQEVREGKVMIEEEMKEEMKEDVDPHNGADDVFSSSGSLGKASEKSSKDKEKNSSDL 168
EE +++ + + + EEE KEE +E+ A+ + SS K ++ K+ SS++
Sbjct: 647 EEKVEKEEKEEELEEEEEKEEEEEEEGNQETAEFLLSSEEIETKDEKEMDKENNDGSSEI 706
Query: 169 GCKEGADKRKRSRVTDKVLTANSNPSS 195
G G +S +D L + SS
Sbjct: 707 GKAVGFLSVPKSLSSDSTLLLFKDSSS 733
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 32.3 bits (72), Expect = 0.29
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 103 RNFVLPEEIIQEVREGKVMIEEEMKEEMKEDVDPHNGADDVFSSSGSLGKASEKSSK--- 159
R + E+ E + EEE +EE +E+ + +D S S GK +K K
Sbjct: 1388 RRIKVQEDSSSENKSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSKSPGKGRKKIRKILK 1447
Query: 160 -DKEKNSSDLGCKEGADKRKR 179
DK + + KE ++RKR
Sbjct: 1448 DDKLRTETQNALKEEEERRKR 1468
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 32.3 bits (72), Expect = 0.29
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 103 RNFVLPEEIIQEVREGKVMIEEEMKEEMKEDVDPHNGADDVFSSSGSLGKASEKSSK--- 159
R + E+ E + EEE +EE +E+ + +D S S GK +K K
Sbjct: 1426 RRIKVQEDSSSENKSNSEEEEEEKEEEEEEEEEEEEEEEDENDDSKSPGKGRKKIRKILK 1485
Query: 160 -DKEKNSSDLGCKEGADKRKR 179
DK + + KE ++RKR
Sbjct: 1486 DDKLRTETQNALKEEEERRKR 1506
>gi|127138957 zinc finger protein 537 [Homo sapiens]
Length = 1081
Score = 32.3 bits (72), Expect = 0.29
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 99 PNPERNFVLPEEIIQEVREGKVMIEEEMKEEMKEDVDPHNGADDVFSSSG----SLGKAS 154
P P+ NF EE++++V E +EE+MKE + P SS + +S
Sbjct: 601 PMPKTNFHAMEELVKKVTEKVAKVEEKMKEPDGKLSPPKRATPSPCSSEVGEPIKMEASS 660
Query: 155 EKSSKDKEKNSSDL--GCKEGA 174
+ + +E + S GCK+G+
Sbjct: 661 DGGFRSQENSPSPPRDGCKDGS 682
>gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo
sapiens]
Length = 729
Score = 32.0 bits (71), Expect = 0.37
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 108 PEEIIQEVREGKVMIEEEMKEEMKEDVDPHNGADDVFSSSGSLGKASEKSSKDKEKNSSD 167
P+E +E +EGK +E+ K++ K + A K+ K SKDKE+ +
Sbjct: 637 PKESSEEGKEGKTPSKEKKKKKKKGKEEEEKAAKK---------KSKHKKSKDKEEGKEE 687
Query: 168 LGCKEGADKRKRSRVTDKVLTANSNPSSP 196
++ R R R L A +P
Sbjct: 688 RRRRQQRPPRSRERTAADELEAFLGGGAP 716
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 32.0 bits (71), Expect = 0.37
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 127 KEEMKEDVDPHNGADDV----FSSSGSLGKASEKSSKDKEKNSSDLGCKEG-----ADKR 177
K KE + G D +SSGS S SS +S+ G G A R
Sbjct: 46 KGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSR 105
Query: 178 KRSRVTDKVLTANSNPSSPSAAKRR 202
S T + +++S+ SPS ++RR
Sbjct: 106 SGSSSTSRSSSSSSSSGSPSPSRRR 130
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 32.0 bits (71), Expect = 0.37
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 127 KEEMKEDVDPHNGADDV----FSSSGSLGKASEKSSKDKEKNSSDLGCKEG-----ADKR 177
K KE + G D +SSGS S SS +S+ G G A R
Sbjct: 46 KGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSR 105
Query: 178 KRSRVTDKVLTANSNPSSPSAAKRR 202
S T + +++S+ SPS ++RR
Sbjct: 106 SGSSSTSRSSSSSSSSGSPSPSRRR 130
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 32.0 bits (71), Expect = 0.37
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 127 KEEMKEDVDPHNGADDV----FSSSGSLGKASEKSSKDKEKNSSDLGCKEG-----ADKR 177
K KE + G D +SSGS S SS +S+ G G A R
Sbjct: 46 KGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSR 105
Query: 178 KRSRVTDKVLTANSNPSSPSAAKRR 202
S T + +++S+ SPS ++RR
Sbjct: 106 SGSSSTSRSSSSSSSSGSPSPSRRR 130
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 32.0 bits (71), Expect = 0.37
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 127 KEEMKEDVDPHNGADDV----FSSSGSLGKASEKSSKDKEKNSSDLGCKEG-----ADKR 177
K KE + G D +SSGS S SS +S+ G G A R
Sbjct: 46 KGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSR 105
Query: 178 KRSRVTDKVLTANSNPSSPSAAKRR 202
S T + +++S+ SPS ++RR
Sbjct: 106 SGSSSTSRSSSSSSSSGSPSPSRRR 130
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 32.0 bits (71), Expect = 0.37
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 127 KEEMKEDVDPHNGADDV----FSSSGSLGKASEKSSKDKEKNSSDLGCKEG-----ADKR 177
K KE + G D +SSGS S SS +S+ G G A R
Sbjct: 46 KGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSR 105
Query: 178 KRSRVTDKVLTANSNPSSPSAAKRR 202
S T + +++S+ SPS ++RR
Sbjct: 106 SGSSSTSRSSSSSSSSGSPSPSRRR 130
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.129 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,919,664
Number of Sequences: 37866
Number of extensions: 426201
Number of successful extensions: 2636
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 2400
Number of HSP's gapped (non-prelim): 337
length of query: 204
length of database: 18,247,518
effective HSP length: 97
effective length of query: 107
effective length of database: 14,574,516
effective search space: 1559473212
effective search space used: 1559473212
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.