Guide to the Human Genome
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Name: C20orf20 Sequence: fasta or formatted (204aa) NCBI GI: 8922764
Description:

MRG-binding protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         14           2
 C cysteine            1.5          3           1
 D aspartate           5.9         12           2
 E glutamate          11.3         23           3
 F phenylalanine       2.9          6           1
 G glycine             8.3         17           4
 H histidine           3.4          7           1
 I isoleucine          3.9          8           2
 K lysine              8.3         17           1
 L leucine             4.4          9           1
 M methionine          3.9          8           1
 N asparagine          3.9          8           1
 P proline             5.9         12           1
 Q glutamine           2.0          4           1
 R arginine            5.4         11           3
 S serine              9.8         20           3
 T threonine           2.9          6           1
 V valine              7.8         16           2
 W tryptophan          1.0          2           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   MRG-binding protein 
ZRANB2                0.026   zinc finger protein 265 isoform 1 
ZRANB2                0.026   zinc finger protein 265 isoform 2 
ZFP3                  0.026   zinc finger protein-3 
HTATSF1               0.023   HIV-1 Tat specific factor 1 
HTATSF1               0.023   HIV-1 Tat specific factor 1 
IKBKAP                0.023   inhibitor of kappa light polypeptide gene enhancer i...
PXK                   0.023   PX domain containing serine/threonine kinase 
NAV1                  0.021   neuron navigator 1 
PAXIP1                0.021   PAX interacting protein 1 
RBM23                 0.021   RNA binding motif protein 23 isoform 1 
TCOF1                 0.021   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.021   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.021   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.021   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.021   Treacher Collins-Franceschetti syndrome 1 isoform a ...
SETD1B                0.021   SET domain containing 1B 
RP9                   0.021   retinitis pigmentosa 9 
FAM9A                 0.021   family with sequence similarity 9, member A 
ZC3H13                0.021   zinc finger CCCH-type containing 13 
CLSPN                 0.018   claspin 
ATRX                  0.018   transcriptional regulator ATRX isoform 2 
ATRX                  0.018   transcriptional regulator ATRX isoform 1 
TSHZ3                 0.018   zinc finger protein 537 
C9orf86               0.018   Rab-like GTP-binding protein 1 isoform 1 
LOC643446             0.018   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.018   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.018   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.018   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.018   PREDICTED: similar to ribonucleic acid binding prot...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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