Guide to the Human Genome
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Name: LOC643037 Sequence: fasta or formatted (156aa) NCBI GI: 89035075
Description:

PREDICTED: similar to hCG1730248

Not currently referenced in the text

Other entries for this name:
alt prot {156aa} PREDICTED: similar to hCG1730248
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         14           2
 C cysteine            3.2          5           1
 D aspartate           1.9          3           1
 E glutamate          10.9         17           3
 F phenylalanine       0.6          1           1
 G glycine            11.5         18           2
 H histidine           3.8          6           1
 I isoleucine          3.2          5           1
 K lysine              6.4         10           2
 L leucine             8.3         13           2
 M methionine          1.3          2           1
 N asparagine          1.9          3           1
 P proline            10.3         16           4
 Q glutamine           2.6          4           2
 R arginine            9.6         15           2
 S serine              3.8          6           1
 T threonine           2.6          4           1
 V valine              5.8          9           3
 W tryptophan          1.3          2           1
 Y tyrosine            1.9          3           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1730248 
LOC643037             0.990   PREDICTED: similar to hCG1730248 
HSF5                  0.023   heat shock transcription factor family member 5 [Ho...
LOC100287450          0.016   PREDICTED: hypothetical protein XP_002343550 
LOC100287417          0.016   PREDICTED: hypothetical protein XP_002343549 
LOC100287374          0.016   PREDICTED: hypothetical protein XP_002343548 
RAVER1                0.016   RAVER1 
OLIG1                 0.016   oligodendrocyte transcription factor 1 
ADAMTS2               0.016   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS2               0.016   ADAM metallopeptidase with thrombospondin type 1 mo...
C20orf141             0.016   hypothetical protein LOC128653 
HOXD8                 0.013   homeobox D8 
SAPS1                 0.013   SAPS domain family, member 1 
RP1L1                 0.013   retinitis pigmentosa 1-like 1 
CCDC150               0.013   coiled-coil domain containing 150 
GJD4                  0.013   connexin40.1 
EN1                   0.013   engrailed homeobox 1 
LIX1L                 0.013   Lix1 homolog (mouse) like 
FGD5                  0.013   FYVE, RhoGEF and PH domain containing 5 
FOXL2                 0.010   forkhead box L2 
LOC100293327          0.010   PREDICTED: hypothetical protein 
LOC100293375          0.010   PREDICTED: hypothetical protein 
LOC100291252          0.010   PREDICTED: hypothetical protein XP_002347634 
LOC100287254          0.010   PREDICTED: hypothetical protein XP_002343484 
TTC9                  0.010   tetratricopeptide repeat domain 9 
FOXG1                 0.010   forkhead box G1 
C14orf4               0.010   chromosome 14 open reading frame 4 
MARCH11               0.010   membrane-associated ring finger (C3HC4) 11 
MAP3K12               0.010   mitogen-activated protein kinase kinase kinase 12 [H...
LOC100129200          0.010   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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