Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 88986509
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|88986509 PREDICTED: chibby homolog 3 (Drosophila) [Homo
sapiens]
(242 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169168460 PREDICTED: chibby homolog 3 (Drosophila) [Homo sapi... 494 e-140
gi|88990086 PREDICTED: chibby homolog 3 (Drosophila) [Homo sapiens] 494 e-140
gi|88986509 PREDICTED: chibby homolog 3 (Drosophila) [Homo sapiens] 494 e-140
gi|50959132 PKD2 interactor, golgi and endoplasmic reticulum ass... 89 3e-18
gi|7656942 PKD2 interactor, golgi and endoplasmic reticulum asso... 89 3e-18
gi|22749425 spermatid associated [Homo sapiens] 43 2e-04
gi|167736355 mucin 4 isoform a [Homo sapiens] 32 0.65
gi|239749721 PREDICTED: hypothetical protein [Homo sapiens] 31 0.85
gi|239743976 PREDICTED: hypothetical protein [Homo sapiens] 31 0.85
gi|156104862 ankyrin repeat domain 38 [Homo sapiens] 31 1.1
gi|239754979 PREDICTED: hypothetical protein [Homo sapiens] 30 1.4
gi|239749217 PREDICTED: similar to Mucin-12, partial [Homo sapiens] 30 1.4
gi|239754668 PREDICTED: mucin 12 [Homo sapiens] 30 2.5
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 30 2.5
gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo ... 30 2.5
gi|27437042 colony stimulating factor 3 receptor isoform b precu... 29 3.2
gi|239757331 PREDICTED: hypothetical protein [Homo sapiens] 29 3.2
gi|239751841 PREDICTED: hypothetical protein [Homo sapiens] 29 3.2
gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo ... 29 3.2
gi|31543169 suppressor of variegation 4-20 homolog 2 [Homo sapiens] 29 3.2
gi|55925608 kelch-like 21 [Homo sapiens] 29 3.2
gi|219879806 TRAF-type zinc finger domain containing 1 [Homo sap... 29 4.2
gi|5729828 TRAF-type zinc finger domain containing 1 [Homo sapiens] 29 4.2
gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo ... 28 5.5
gi|27437045 colony stimulating factor 3 receptor isoform d precu... 28 5.5
gi|24496783 colony stimulating factor 3 receptor isoform c precu... 28 5.5
gi|67782330 trinucleotide repeat containing 6B isoform 3 [Homo s... 28 5.5
gi|4503081 colony stimulating factor 3 receptor isoform a precur... 28 5.5
gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo ... 28 5.5
gi|27886539 nuclear factor of activated T-cells, cytoplasmic, ca... 28 5.5
>gi|169168460 PREDICTED: chibby homolog 3 (Drosophila) [Homo
sapiens]
Length = 242
Score = 494 bits (1273), Expect = e-140
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MWASRDHLPEPDLGDAAPPGSPSSFWTSGLPRQERSTSRQRSRGSPSSTCVPYKVHALAT 60
MWASRDHLPEPDLGDAAPPGSPSSFWTSGLPRQERSTSRQRSRGSPSSTCVPYKVHALAT
Sbjct: 1 MWASRDHLPEPDLGDAAPPGSPSSFWTSGLPRQERSTSRQRSRGSPSSTCVPYKVHALAT 60
Query: 61 FECSATSHASRLWQTLQQFWADHISRPFSPRRPPLRRMPSLSTFYLLDHNTRQAELGLAY 120
FECSATSHASRLWQTLQQFWADHISRPFSPRRPPLRRMPSLSTFYLLDHNTRQAELGLAY
Sbjct: 61 FECSATSHASRLWQTLQQFWADHISRPFSPRRPPLRRMPSLSTFYLLDHNTRQAELGLAY 120
Query: 121 GAPCMRLSNQAFVFRGGRWTTESQLARTRSPLLSRTAWGWKAQVQRSKSQVLLEENNYLK 180
GAPCMRLSNQAFVFRGGRWTTESQLARTRSPLLSRTAWGWKAQVQRSKSQVLLEENNYLK
Sbjct: 121 GAPCMRLSNQAFVFRGGRWTTESQLARTRSPLLSRTAWGWKAQVQRSKSQVLLEENNYLK 180
Query: 181 LQQELLIDMLTETMARMHLLEKQRNPEVIPTAAARAGQRKMRKRAGASAGVLMIQPCALD 240
LQQELLIDMLTETMARMHLLEKQRNPEVIPTAAARAGQRKMRKRAGASAGVLMIQPCALD
Sbjct: 181 LQQELLIDMLTETMARMHLLEKQRNPEVIPTAAARAGQRKMRKRAGASAGVLMIQPCALD 240
Query: 241 SQ 242
SQ
Sbjct: 241 SQ 242
>gi|88990086 PREDICTED: chibby homolog 3 (Drosophila) [Homo sapiens]
Length = 242
Score = 494 bits (1273), Expect = e-140
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MWASRDHLPEPDLGDAAPPGSPSSFWTSGLPRQERSTSRQRSRGSPSSTCVPYKVHALAT 60
MWASRDHLPEPDLGDAAPPGSPSSFWTSGLPRQERSTSRQRSRGSPSSTCVPYKVHALAT
Sbjct: 1 MWASRDHLPEPDLGDAAPPGSPSSFWTSGLPRQERSTSRQRSRGSPSSTCVPYKVHALAT 60
Query: 61 FECSATSHASRLWQTLQQFWADHISRPFSPRRPPLRRMPSLSTFYLLDHNTRQAELGLAY 120
FECSATSHASRLWQTLQQFWADHISRPFSPRRPPLRRMPSLSTFYLLDHNTRQAELGLAY
Sbjct: 61 FECSATSHASRLWQTLQQFWADHISRPFSPRRPPLRRMPSLSTFYLLDHNTRQAELGLAY 120
Query: 121 GAPCMRLSNQAFVFRGGRWTTESQLARTRSPLLSRTAWGWKAQVQRSKSQVLLEENNYLK 180
GAPCMRLSNQAFVFRGGRWTTESQLARTRSPLLSRTAWGWKAQVQRSKSQVLLEENNYLK
Sbjct: 121 GAPCMRLSNQAFVFRGGRWTTESQLARTRSPLLSRTAWGWKAQVQRSKSQVLLEENNYLK 180
Query: 181 LQQELLIDMLTETMARMHLLEKQRNPEVIPTAAARAGQRKMRKRAGASAGVLMIQPCALD 240
LQQELLIDMLTETMARMHLLEKQRNPEVIPTAAARAGQRKMRKRAGASAGVLMIQPCALD
Sbjct: 181 LQQELLIDMLTETMARMHLLEKQRNPEVIPTAAARAGQRKMRKRAGASAGVLMIQPCALD 240
Query: 241 SQ 242
SQ
Sbjct: 241 SQ 242
>gi|88986509 PREDICTED: chibby homolog 3 (Drosophila) [Homo sapiens]
Length = 242
Score = 494 bits (1273), Expect = e-140
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MWASRDHLPEPDLGDAAPPGSPSSFWTSGLPRQERSTSRQRSRGSPSSTCVPYKVHALAT 60
MWASRDHLPEPDLGDAAPPGSPSSFWTSGLPRQERSTSRQRSRGSPSSTCVPYKVHALAT
Sbjct: 1 MWASRDHLPEPDLGDAAPPGSPSSFWTSGLPRQERSTSRQRSRGSPSSTCVPYKVHALAT 60
Query: 61 FECSATSHASRLWQTLQQFWADHISRPFSPRRPPLRRMPSLSTFYLLDHNTRQAELGLAY 120
FECSATSHASRLWQTLQQFWADHISRPFSPRRPPLRRMPSLSTFYLLDHNTRQAELGLAY
Sbjct: 61 FECSATSHASRLWQTLQQFWADHISRPFSPRRPPLRRMPSLSTFYLLDHNTRQAELGLAY 120
Query: 121 GAPCMRLSNQAFVFRGGRWTTESQLARTRSPLLSRTAWGWKAQVQRSKSQVLLEENNYLK 180
GAPCMRLSNQAFVFRGGRWTTESQLARTRSPLLSRTAWGWKAQVQRSKSQVLLEENNYLK
Sbjct: 121 GAPCMRLSNQAFVFRGGRWTTESQLARTRSPLLSRTAWGWKAQVQRSKSQVLLEENNYLK 180
Query: 181 LQQELLIDMLTETMARMHLLEKQRNPEVIPTAAARAGQRKMRKRAGASAGVLMIQPCALD 240
LQQELLIDMLTETMARMHLLEKQRNPEVIPTAAARAGQRKMRKRAGASAGVLMIQPCALD
Sbjct: 181 LQQELLIDMLTETMARMHLLEKQRNPEVIPTAAARAGQRKMRKRAGASAGVLMIQPCALD 240
Query: 241 SQ 242
SQ
Sbjct: 241 SQ 242
>gi|50959132 PKD2 interactor, golgi and endoplasmic reticulum
associated 1 isoform b [Homo sapiens]
Length = 126
Score = 89.0 bits (219), Expect = 3e-18
Identities = 48/116 (41%), Positives = 73/116 (62%), Gaps = 8/116 (6%)
Query: 88 FSPRRPPLRRMPSLSTFYLLDHNTRQAELGLAYGAPCMRLSNQAFVFRGGRWTTESQLAR 147
FSP++ P R+ SLS + LD +TR+ ELGL YG+P M L+ Q+ F G+W E+ +
Sbjct: 8 FSPKKTPPRKSASLSNLHSLDRSTREVELGLEYGSPTMNLAGQSLKFENGQWIAETGV-- 65
Query: 148 TRSPLLSRTAWGWKAQVQRSKSQVLLEENNYLKLQQELLIDMLTETMARMHLLEKQ 203
S + R + Q R ++Q L EENN L+L+ ++L+DML+E+ A HL+EK+
Sbjct: 66 --SGGVDRR----EVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKE 115
>gi|7656942 PKD2 interactor, golgi and endoplasmic reticulum
associated 1 isoform a [Homo sapiens]
Length = 126
Score = 89.0 bits (219), Expect = 3e-18
Identities = 48/116 (41%), Positives = 73/116 (62%), Gaps = 8/116 (6%)
Query: 88 FSPRRPPLRRMPSLSTFYLLDHNTRQAELGLAYGAPCMRLSNQAFVFRGGRWTTESQLAR 147
FSP++ P R+ SLS + LD +TR+ ELGL YG+P M L+ Q+ F G+W E+ +
Sbjct: 8 FSPKKTPPRKSASLSNLHSLDRSTREVELGLEYGSPTMNLAGQSLKFENGQWIAETGV-- 65
Query: 148 TRSPLLSRTAWGWKAQVQRSKSQVLLEENNYLKLQQELLIDMLTETMARMHLLEKQ 203
S + R + Q R ++Q L EENN L+L+ ++L+DML+E+ A HL+EK+
Sbjct: 66 --SGGVDRR----EVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKE 115
>gi|22749425 spermatid associated [Homo sapiens]
Length = 448
Score = 43.1 bits (100), Expect = 2e-04
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 94 PLRRMPSLSTFYLLDHNTRQAELGLAYGAPCMRLSNQAFVFRGGRWTTESQLARTRSPLL 153
PL R S+ ++ QA+L L Y P ++LS++ FVF+ GRW E+ R +SP
Sbjct: 91 PLNRFSSVP-LDPMERPMSQADLELDYNPPRVQLSDEMFVFQDGRWVNEN--CRLQSPYF 147
Query: 154 SRTA-WGWKAQVQRSKSQVLLEENN 177
S +A + K +R + +L+E N
Sbjct: 148 SPSASFHHKLHHKRLAKECMLQEEN 172
Score = 37.0 bits (84), Expect = 0.015
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 173 LEENNYLKLQQELLIDMLTETMARMHLL 200
L ENN LKLQQ+L+ID +TE ARM +L
Sbjct: 400 LWENNKLKLQQKLVIDTVTEVTARMEML 427
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 31.6 bits (70), Expect = 0.65
Identities = 38/130 (29%), Positives = 49/130 (37%), Gaps = 36/130 (27%)
Query: 21 SPSSFWTSGLPRQERSTSRQRSRGSPSST----CVPYKVHALATFECSA----------- 65
SPS F SG QE S + + SPSS V KV + T S
Sbjct: 355 SPSGFNPSGTVSQETFPSGETTTSSPSSVSNTFLVTSKVFRMPTSRDSTLGNTEETSLSV 414
Query: 66 -------TSHASRLWQTLQQFWADHISRPFSPRRPPLRRMPSLSTFYLLDHNTRQAELGL 118
TS S +W W+D +S SP P P +ST + +T+Q+E
Sbjct: 415 SGTISAITSKVSTIW------WSDTLSTALSPSSLP----PKISTAF----HTQQSEGAE 460
Query: 119 AYGAPCMRLS 128
G P R S
Sbjct: 461 TTGRPHERSS 470
>gi|239749721 PREDICTED: hypothetical protein [Homo sapiens]
Length = 378
Score = 31.2 bits (69), Expect = 0.85
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 9 PEPDLGDAAPPGSPSSFWTSGLPRQERSTSRQRSRGSPSSTCV 51
P P L DAA P SP S +P Q +T +RSR +P+ + V
Sbjct: 61 PVPQLPDAALPLSPELRRPSTVPDQPPATDNRRSRMAPALSTV 103
>gi|239743976 PREDICTED: hypothetical protein [Homo sapiens]
Length = 378
Score = 31.2 bits (69), Expect = 0.85
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 9 PEPDLGDAAPPGSPSSFWTSGLPRQERSTSRQRSRGSPSSTCV 51
P P L DAA P SP S +P Q +T +RSR +P+ + V
Sbjct: 61 PVPQLPDAALPLSPELRRPSTVPDQPPATDNRRSRMAPALSTV 103
>gi|156104862 ankyrin repeat domain 38 [Homo sapiens]
Length = 995
Score = 30.8 bits (68), Expect = 1.1
Identities = 28/113 (24%), Positives = 40/113 (35%), Gaps = 3/113 (2%)
Query: 11 PDLGDAAPPGSPSSFWTSGLPRQERSTSRQRSRGSPSSTCVPYKVHALATFECSATSHAS 70
PD G P P W+ +PR E S Q SP P + + + +
Sbjct: 76 PDSGARPPAAPPLQNWSPVVPR-EASLGTQEQNQSPPLGNAPQASTSRSEVSYHRKALLA 134
Query: 71 RLWQTLQQFWADHISRPFSPRRPPLRRMPSLSTFYLLDHNTRQAELGLAYGAP 123
+ L+ + F RP L R S+ L H+ E GL+ G P
Sbjct: 135 EATRQLEAAEPEDAELTFGSGRPQLLRASSMPATLL--HSRASEEPGLSLGPP 185
>gi|239754979 PREDICTED: hypothetical protein [Homo sapiens]
Length = 780
Score = 30.4 bits (67), Expect = 1.4
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 11/74 (14%)
Query: 17 APPGSPSSFWTSGLPRQERSTSRQRSRGSPSSTCVPYKVHALATFECSATSHASRLWQTL 76
A PG S+ W S ++ R +SRQ SR S P A + + W T
Sbjct: 327 AAPGCRSASWCSCCAKESRRSSRQLSRLRRSPPTAP-----------GAATSSRHAWDTT 375
Query: 77 QQFWADHISRPFSP 90
W + P P
Sbjct: 376 ALLWLATVMAPAPP 389
>gi|239749217 PREDICTED: similar to Mucin-12, partial [Homo sapiens]
Length = 861
Score = 30.4 bits (67), Expect = 1.4
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 9 PEPDLGDAAP-PGSPSSFWTSGLPRQ-------ERSTSRQRSRGSPSSTCVPYKVHALAT 60
P +GD+ P P S S T+ LP E+ST+ S SP +T +P ++ +
Sbjct: 457 PSVLVGDSTPSPISSGSMETTALPGSTTKPGLSEKSTTFYSSPRSPDTTHLPARMTSSGV 516
Query: 61 FECSATSHA 69
E S TSH+
Sbjct: 517 SEESTTSHS 525
Score = 28.5 bits (62), Expect = 5.5
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 22 PSSFWTSGLPRQERSTSRQRSRGSPSSTCVPYKVHALATFECSATSHA 69
P S T GL ERST+ S SP++T P + E S TSH+
Sbjct: 810 PGSTTTPGL--SERSTTFHSSPRSPATTLSPASTTSSGVSEESTTSHS 855
Score = 27.7 bits (60), Expect = 9.4
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 22 PSSFWTSGLPRQERSTSRQRSRGSPSSTCVPYKVHALATFECSATSHA 69
P S T+GL E+ST+ S SP T P + + E S TSH+
Sbjct: 124 PGSTTTAGL--SEKSTTFYSSPRSPDRTLSPARTTSSGVSEKSTTSHS 169
>gi|239754668 PREDICTED: mucin 12 [Homo sapiens]
Length = 1952
Score = 29.6 bits (65), Expect = 2.5
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 9 PEPDLGDAAP-PGSPSSFWTSGLPRQ-------ERSTSRQRSRGSPSSTCVPYKVHALAT 60
P +GD+ P P S S T+ LP E+ST+ S SP +T +P + +
Sbjct: 522 PSVLVGDSTPSPISSGSMETTALPGSTTKPGLSEKSTTFYSSPRSPDTTHLPASMTSSGV 581
Query: 61 FECSATSHA 69
E S TSH+
Sbjct: 582 SEESTTSHS 590
Score = 28.5 bits (62), Expect = 5.5
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 22 PSSFWTSGLPRQERSTSRQRSRGSPSSTCVPYKVHALATFECSATSHA 69
P S T GL ERST+ S SP++T P + E S TSH+
Sbjct: 875 PGSTTTPGL--SERSTTFHSSPRSPATTLSPASTTSSGVSEESTTSHS 920
Score = 27.7 bits (60), Expect = 9.4
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 22 PSSFWTSGLPRQERSTSRQRSRGSPSSTCVPYKVHALATFECSATSHA 69
P S T+GL E+ST+ S SP T P + + E S TSH+
Sbjct: 189 PGSTTTAGL--SEKSTTFYSSPRSPDRTLSPARTTSSGVSEKSTTSHS 234
Score = 27.7 bits (60), Expect = 9.4
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 14 GDAAPPGSPSSFWTSGLPRQERSTSRQRSRGSPSSTCVPYKVHALATFECSATSHA 69
G P S T+GL E+ST+ S SP +T P + E S TSH+
Sbjct: 978 GSTETTALPGSTTTAGL--SEKSTTFYSSPRSPDTTLSPASTTSSGVSEESTTSHS 1031
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 29.6 bits (65), Expect = 2.5
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 9 PEPDLGDAAP-PGSPSSFWTSGLPRQ-------ERSTSRQRSRGSPSSTCVPYKVHALAT 60
P +GD+ P P S S T+ LP E+ST+ S SP +T +P + +
Sbjct: 601 PSVLVGDSTPSPISSGSMETTALPGSTTKPGLSEKSTTFYSSPRSPDTTHLPASMTSSGV 660
Query: 61 FECSATSHA 69
E S TSH+
Sbjct: 661 SEESTTSHS 669
Score = 27.7 bits (60), Expect = 9.4
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 22 PSSFWTSGLPRQERSTSRQRSRGSPSSTCVPYKVHALATFECSATSHA 69
P S T+GL E+ST+ S SP T P + + E S TSH+
Sbjct: 268 PGSTTTAGL--SEKSTTFYSSPRSPDRTLSPARTTSSGVSEKSTTSHS 313
Score = 27.7 bits (60), Expect = 9.4
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 13 LGDAAPPG-SPSSFWTSGLPRQ-------ERSTSRQRSRGSPSSTCVPYKVHALATFECS 64
+G++ P SPSS T+ LP E+ST+ S SP +T P + E S
Sbjct: 1409 VGESTPSRLSPSSTETTTLPGSPTTPSLSEKSTTFYTSPRSPDATLSPATTTSSGVSEES 1468
Query: 65 ATSHA 69
+TSH+
Sbjct: 1469 STSHS 1473
Score = 27.7 bits (60), Expect = 9.4
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 14 GDAAPPGSPSSFWTSGLPRQERSTSRQRSRGSPSSTCVPYKVHALATFECSATSHA 69
G P S T+GL E+ST+ S SP +T P + E S TSH+
Sbjct: 1671 GSTETTALPGSTTTAGL--SEKSTTFYSSPRSPDTTLSPASTTSSGVSEESTTSHS 1724
Score = 27.7 bits (60), Expect = 9.4
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 13 LGDAAPPG-SPSSFWTSGLPRQ-------ERSTSRQRSRGSPSSTCVPYKVHALATFECS 64
+G++ P SPSS T+ LP E+ST+ S SP +T P + E S
Sbjct: 2492 VGESTPSRLSPSSTETTTLPGSPTTPSLSEKSTTFYTSPRSPDATLSPATTTSSGVSEES 2551
Query: 65 ATSHA 69
+TSH+
Sbjct: 2552 STSHS 2556
Score = 27.7 bits (60), Expect = 9.4
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 13 LGDAAPPG-SPSSFWTSGLPRQ-------ERSTSRQRSRGSPSSTCVPYKVHALATFECS 64
+G++ P SPSS T+ LP E+ST+ S SP +T P + E S
Sbjct: 2966 VGESTPSRLSPSSTETTTLPGSPTTPSLSEKSTTFYTSPRSPDATLSPATTTSSGVSEES 3025
Query: 65 ATSHA 69
+TSH+
Sbjct: 3026 STSHS 3030
Score = 27.7 bits (60), Expect = 9.4
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 14 GDAAPPGSPSSFWTSGLPRQERSTSRQRSRGSPSSTCVPYKVHALATFECSATSHA 69
G P S T+GL E+ST+ S SP +T P + E S TSH+
Sbjct: 3228 GSTETTALPGSTTTAGL--SEKSTTFYSSPRSPDTTLSPASTTSSGVSEESTTSHS 3281
Score = 27.7 bits (60), Expect = 9.4
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 13 LGDAAPPG-SPSSFWTSGLPRQ-------ERSTSRQRSRGSPSSTCVPYKVHALATFECS 64
+G++ P SPSS T+ LP E+ST+ S SP +T P + E S
Sbjct: 4049 VGESTPSRLSPSSTETTTLPGSPTTPSLSEKSTTFYTSPRSPDATLSPATTTSSGVSEES 4108
Query: 65 ATSHA 69
+TSH+
Sbjct: 4109 STSHS 4113
Score = 27.7 bits (60), Expect = 9.4
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 14 GDAAPPGSPSSFWTSGLPRQERSTSRQRSRGSPSSTCVPYKVHALATFECSATSHA 69
G P S T+GL E+ST+ S SP +T P + E S TSH+
Sbjct: 4311 GSTETTALPGSTTTAGL--SEKSTTFYSSPRSPDTTLSPASTTSSGVSEESTTSHS 4364
>gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo
sapiens]
Length = 2036
Score = 29.6 bits (65), Expect = 2.5
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 9 PEPDLGDAAP-PGSPSSFWTSGLPRQ-------ERSTSRQRSRGSPSSTCVPYKVHALAT 60
P +GD+ P P S S T+ LP E+ST+ S SP +T +P + +
Sbjct: 88 PSVLVGDSTPSPISSGSMETTALPGSTTKPGLSEKSTTFYSSPRSPDTTHLPASMTSSGV 147
Query: 61 FECSATSHA 69
E S TSH+
Sbjct: 148 SEESTTSHS 156
Score = 27.7 bits (60), Expect = 9.4
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 13 LGDAAPPG-SPSSFWTSGLPRQ-------ERSTSRQRSRGSPSSTCVPYKVHALATFECS 64
+G++ P SPSS T+ LP E+ST+ S SP +T P + E S
Sbjct: 896 VGESTPSRLSPSSTETTTLPGSPTTPSLSEKSTTFYTSPRSPDATLSPATTTSSGVSEES 955
Query: 65 ATSHA 69
+TSH+
Sbjct: 956 STSHS 960
Score = 27.7 bits (60), Expect = 9.4
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 14 GDAAPPGSPSSFWTSGLPRQERSTSRQRSRGSPSSTCVPYKVHALATFECSATSHA 69
G P S T+GL E+ST+ S SP +T P + E S TSH+
Sbjct: 1158 GSTETTALPGSTTTAGL--SEKSTTFYSSPRSPDTTLSPASTTSSGVSEESTTSHS 1211
>gi|27437042 colony stimulating factor 3 receptor isoform b
precursor [Homo sapiens]
Length = 769
Score = 29.3 bits (64), Expect = 3.2
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 12/111 (10%)
Query: 2 WASRDHLPEPDLGDAAPPGSPSSFWTSGLPRQERSTSRQRSRGSPSSTCVP---YKVHAL 58
WA + +PEP +P + FWT+ + + SRG P Y +H +
Sbjct: 542 WAQLEWVPEPPELGKSPLTHYTIFWTNAQNQSFSAILNASSRGFVLHGLEPASLYHIHLM 601
Query: 59 ATFECSATSHASRLWQTLQ--------QFWADHISRPFSPRRP-PLRRMPS 100
A + AT+ TL Q ++ ++P P RRMPS
Sbjct: 602 AASQAGATNSTVLTLMTLTPAGRIPSGQVSQTQLTAAWAPGCPQSWRRMPS 652
>gi|239757331 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 29.3 bits (64), Expect = 3.2
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 1 MWASRDHLPEPDLGDAAPPGSP-SSFWTSGLPRQERSTSRQRSRGSPSS 48
M+ SR LP P + PP P +S LPR R SR RSR S
Sbjct: 1 MYMSRLSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRS 49
>gi|239751841 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 29.3 bits (64), Expect = 3.2
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 1 MWASRDHLPEPDLGDAAPPGSP-SSFWTSGLPRQERSTSRQRSRGSPSS 48
M+ SR LP P + PP P +S LPR R SR RSR S
Sbjct: 1 MYMSRLSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRS 49
>gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo
sapiens]
Length = 231
Score = 29.3 bits (64), Expect = 3.2
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 1 MWASRDHLPEPDLGDAAPPGSP-SSFWTSGLPRQERSTSRQRSRGSPSS 48
M+ SR LP P + PP P +S LPR R SR RSR S
Sbjct: 1 MYMSRLSLPRPSSPLSWPPPPPRASSLPRSLPRSPRLCSRSRSRSRSRS 49
>gi|31543169 suppressor of variegation 4-20 homolog 2 [Homo sapiens]
Length = 462
Score = 29.3 bits (64), Expect = 3.2
Identities = 34/101 (33%), Positives = 41/101 (40%), Gaps = 18/101 (17%)
Query: 48 STCVPYKVHALATFECSATSHASRLW-QTLQQFWADHISRPFSPRRPPLRRMPSLSTFYL 106
+ C P ++ A CSA S LW Q L Q RP RRP RR P LST
Sbjct: 299 AACQPLRLPA-----CSARPDTSPLWLQWLPQ--PQPRVRPRKRRRPRPRRAPVLST--- 348
Query: 107 LDHNTRQAELGLAYG-APCMRLSNQAFVFRG----GRWTTE 142
H+ + L G P RL +A V G RW +
Sbjct: 349 --HHAARVSLHRWGGCGPHCRLRGEALVALGQPPHARWAPQ 387
>gi|55925608 kelch-like 21 [Homo sapiens]
Length = 597
Score = 29.3 bits (64), Expect = 3.2
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 97 RMPSLSTFYLLDHNTRQAELGLAYGAPCMRLSNQAFVFRGGRW 139
R+P + FYLL H +AE +A PC+RL +A F+ R+
Sbjct: 225 RLPFVRRFYLLAHV--EAEPLVARCPPCLRLLREARDFQAARY 265
>gi|219879806 TRAF-type zinc finger domain containing 1 [Homo
sapiens]
Length = 582
Score = 28.9 bits (63), Expect = 4.2
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 18 PPGSPSSFWTSGLPRQERSTSRQRSRGSPSSTCVP 52
PP P + T+ + RSTS R PSS CVP
Sbjct: 450 PPSRPINNMTATYNQLSRSTSGPRPGCQPSSPCVP 484
>gi|5729828 TRAF-type zinc finger domain containing 1 [Homo sapiens]
Length = 582
Score = 28.9 bits (63), Expect = 4.2
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 18 PPGSPSSFWTSGLPRQERSTSRQRSRGSPSSTCVP 52
PP P + T+ + RSTS R PSS CVP
Sbjct: 450 PPSRPINNMTATYNQLSRSTSGPRPGCQPSSPCVP 484
>gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo
sapiens]
Length = 1723
Score = 28.5 bits (62), Expect = 5.5
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 8 LPEPDLGDAAPPGSPSSFWTSGLPRQERSTSRQRSRGSPSST 49
LP P G P PSS W+S PR R Q SR + +ST
Sbjct: 1488 LPRPPPGLTNP--KPSSPWSSTAPRSVRGWGTQDSRLASAST 1527
>gi|27437045 colony stimulating factor 3 receptor isoform d
precursor [Homo sapiens]
Length = 783
Score = 28.5 bits (62), Expect = 5.5
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 2 WASRDHLPEPDLGDAAPPGSPSSFWTSGLPRQERSTSRQRSRGSPSSTCVP---YKVHAL 58
WA + +PEP +P + FWT+ + + SRG P Y +H +
Sbjct: 542 WAQLEWVPEPPELGKSPLTHYTIFWTNAQNQSFSAILNASSRGFVLHGLEPASLYHIHLM 601
Query: 59 ATFECSATSHASRLWQTL 76
A + AT+ TL
Sbjct: 602 AASQAGATNSTVLTLMTL 619
>gi|24496783 colony stimulating factor 3 receptor isoform c
precursor [Homo sapiens]
Length = 863
Score = 28.5 bits (62), Expect = 5.5
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 2 WASRDHLPEPDLGDAAPPGSPSSFWTSGLPRQERSTSRQRSRGSPSSTCVP---YKVHAL 58
WA + +PEP +P + FWT+ + + SRG P Y +H +
Sbjct: 542 WAQLEWVPEPPELGKSPLTHYTIFWTNAQNQSFSAILNASSRGFVLHGLEPASLYHIHLM 601
Query: 59 ATFECSATSHASRLWQTL 76
A + AT+ TL
Sbjct: 602 AASQAGATNSTVLTLMTL 619
>gi|67782330 trinucleotide repeat containing 6B isoform 3 [Homo
sapiens]
Length = 1029
Score = 28.5 bits (62), Expect = 5.5
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 8 LPEPDLGDAAPPGSPSSFWTSGLPRQERSTSRQRSRGSPSST 49
LP P G P PSS W+S PR R Q SR + +ST
Sbjct: 794 LPRPPPGLTNP--KPSSPWSSTAPRSVRGWGTQDSRLASAST 833
>gi|4503081 colony stimulating factor 3 receptor isoform a precursor
[Homo sapiens]
Length = 836
Score = 28.5 bits (62), Expect = 5.5
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 2 WASRDHLPEPDLGDAAPPGSPSSFWTSGLPRQERSTSRQRSRGSPSSTCVP---YKVHAL 58
WA + +PEP +P + FWT+ + + SRG P Y +H +
Sbjct: 542 WAQLEWVPEPPELGKSPLTHYTIFWTNAQNQSFSAILNASSRGFVLHGLEPASLYHIHLM 601
Query: 59 ATFECSATSHASRLWQTL 76
A + AT+ TL
Sbjct: 602 AASQAGATNSTVLTLMTL 619
>gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo
sapiens]
Length = 1833
Score = 28.5 bits (62), Expect = 5.5
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 8 LPEPDLGDAAPPGSPSSFWTSGLPRQERSTSRQRSRGSPSST 49
LP P G P PSS W+S PR R Q SR + +ST
Sbjct: 1598 LPRPPPGLTNP--KPSSPWSSTAPRSVRGWGTQDSRLASAST 1637
>gi|27886539 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 2 isoform B [Homo sapiens]
Length = 921
Score = 28.5 bits (62), Expect = 5.5
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 124 CMRLSNQAFVFRGGRWTTESQLARTRSPLLSRTAWGWKAQVQRSKSQ 170
C+ Q + G +T+ES++ T + W +A V + KSQ
Sbjct: 588 CLVYGGQQMILTGQNFTSESKVVFTEKTTDGQQIWEMEATVDKDKSQ 634
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.129 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,108,392
Number of Sequences: 37866
Number of extensions: 469824
Number of successful extensions: 2126
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 2066
Number of HSP's gapped (non-prelim): 95
length of query: 242
length of database: 18,247,518
effective HSP length: 99
effective length of query: 143
effective length of database: 14,498,784
effective search space: 2073326112
effective search space used: 2073326112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.