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Search of human proteins with 88957790
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|88957790 PREDICTED: hypothetical protein LOC389043 [Homo
sapiens]
(108 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|88957790 PREDICTED: hypothetical protein LOC389043 [Homo sapi... 233 3e-62
gi|239753337 PREDICTED: hypothetical protein LOC389043 [Homo sap... 154 2e-38
gi|239741781 PREDICTED: hypothetical protein LOC389043 [Homo sap... 152 7e-38
gi|47458036 hereditary sensory neuropathy, type II [Homo sapiens] 30 0.32
gi|239755199 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|239745032 PREDICTED: hypothetical protein XP_002343336 [Homo ... 30 0.42
gi|239753972 PREDICTED: hypothetical protein [Homo sapiens] 30 0.55
gi|169161039 PREDICTED: hypothetical protein LOC400743 [Homo sap... 28 1.6
gi|169162103 PREDICTED: hypothetical protein LOC400743 [Homo sap... 28 1.6
gi|169162790 PREDICTED: hypothetical protein LOC400743 [Homo sap... 28 1.6
gi|85838513 pantothenate kinase 2 isoform 1 preproprotein [Homo ... 28 2.1
gi|148747866 heparan sulfate 6-O-sulfotransferase 1 [Homo sapiens] 28 2.1
gi|22749325 zinc finger protein 48 [Homo sapiens] 27 2.7
gi|116089284 fibrous sheath interacting protein 1 [Homo sapiens] 27 2.7
gi|169161714 PREDICTED: tetratricopeptide repeat domain 34 [Homo... 27 3.5
gi|169162130 PREDICTED: tetratricopeptide repeat domain 34 [Homo... 27 3.5
gi|29570785 CCCTC-binding factor-like protein [Homo sapiens] 27 3.5
gi|145977222 zinc finger protein 154 [Homo sapiens] 27 4.6
gi|169206056 PREDICTED: similar to FRAS1 related extracellular m... 26 6.0
gi|113424309 PREDICTED: similar to FRAS1 related extracellular m... 26 6.0
gi|113424119 PREDICTED: similar to FRAS1 related extracellular m... 26 6.0
gi|156139122 CXXC finger 6 [Homo sapiens] 26 6.0
gi|109715833 zinc finger protein 565 [Homo sapiens] 26 6.0
gi|109715831 zinc finger protein 565 [Homo sapiens] 26 6.0
gi|239746716 PREDICTED: hypothetical protein XP_002343819 [Homo ... 26 7.9
gi|218083800 Rho GTPase-activating protein isoform 1 [Homo sapiens] 26 7.9
gi|29469071 Rho GTPase-activating protein isoform 2 [Homo sapiens] 26 7.9
>gi|88957790 PREDICTED: hypothetical protein LOC389043 [Homo
sapiens]
Length = 108
Score = 233 bits (593), Expect = 3e-62
Identities = 108/108 (100%), Positives = 108/108 (100%)
Query: 1 MQDPEGSKESTVRRKSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLLTLGSRRIP 60
MQDPEGSKESTVRRKSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLLTLGSRRIP
Sbjct: 1 MQDPEGSKESTVRRKSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLLTLGSRRIP 60
Query: 61 DHSCVHPGREPSEDFRDHLEGSGPERLPRNRLWLFTRCLLCFIWEPLP 108
DHSCVHPGREPSEDFRDHLEGSGPERLPRNRLWLFTRCLLCFIWEPLP
Sbjct: 61 DHSCVHPGREPSEDFRDHLEGSGPERLPRNRLWLFTRCLLCFIWEPLP 108
>gi|239753337 PREDICTED: hypothetical protein LOC389043 [Homo
sapiens]
Length = 128
Score = 154 bits (388), Expect = 2e-38
Identities = 73/73 (100%), Positives = 73/73 (100%)
Query: 1 MQDPEGSKESTVRRKSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLLTLGSRRIP 60
MQDPEGSKESTVRRKSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLLTLGSRRIP
Sbjct: 1 MQDPEGSKESTVRRKSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLLTLGSRRIP 60
Query: 61 DHSCVHPGREPSE 73
DHSCVHPGREPSE
Sbjct: 61 DHSCVHPGREPSE 73
>gi|239741781 PREDICTED: hypothetical protein LOC389043 [Homo
sapiens]
Length = 128
Score = 152 bits (383), Expect = 7e-38
Identities = 72/73 (98%), Positives = 72/73 (98%)
Query: 1 MQDPEGSKESTVRRKSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLLTLGSRRIP 60
MQDPEGSKESTVR KSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLLTLGSRRIP
Sbjct: 1 MQDPEGSKESTVRHKSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLLTLGSRRIP 60
Query: 61 DHSCVHPGREPSE 73
DHSCVHPGREPSE
Sbjct: 61 DHSCVHPGREPSE 73
>gi|47458036 hereditary sensory neuropathy, type II [Homo sapiens]
Length = 434
Score = 30.4 bits (67), Expect = 0.32
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 13 RRKSTV---RQLSFRDVVLRCRPHPQVHPGSQPSEGTME-IQLLTLGSRRIPDHSC---V 65
RRKST Q +LR + PG P+ T E + +L + R+ SC V
Sbjct: 58 RRKSTSFLEAQTHHFQPLLRTVGQSLLPPGGSPTNWTPEAVVMLGTTASRVTGESCEIQV 117
Query: 66 HPGREPSEDFRDHLEG 81
HP EPS+ + D+ G
Sbjct: 118 HPMFEPSQVYSDYRPG 133
>gi|239755199 PREDICTED: hypothetical protein [Homo sapiens]
Length = 279
Score = 30.0 bits (66), Expect = 0.42
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 33 HPQVHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPGREPSEDFRDH 78
HP +HP + PS L+ S P H HP P+ R H
Sbjct: 140 HPSIHPPTHPSIHASTHPLIHHPSTHPPTHPSTHPSIHPTIHPRAH 185
>gi|239745032 PREDICTED: hypothetical protein XP_002343336 [Homo
sapiens]
Length = 828
Score = 30.0 bits (66), Expect = 0.42
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 33 HPQVHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPGREP 71
HP HP + PS + I L T S P HS +HP P
Sbjct: 167 HPPTHPPTHPSIHS-SIHLPTHSSIHPPTHSFIHPSIHP 204
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 33 HPQVHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPGREP 71
HP +HP + PS + I S P HS +HP P
Sbjct: 69 HPPIHPPTHPSIHPL-IHPSIHPSLHPPTHSSIHPSTHP 106
Score = 25.8 bits (55), Expect = 7.9
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 5/40 (12%)
Query: 33 HPQVHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPGREPS 72
HP +HP P + S P HS +HP PS
Sbjct: 85 HPSIHPSLHPPTHSS-----IHPSTHPPTHSSIHPSIHPS 119
>gi|239753972 PREDICTED: hypothetical protein [Homo sapiens]
Length = 298
Score = 29.6 bits (65), Expect = 0.55
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 32 PHPQVHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPGREPS 72
PHP +HP PS + I T S P H HP PS
Sbjct: 181 PHPSIHPPIHPSTHPL-IHPSTHTSTHPPTHPPTHPPSNPS 220
>gi|169161039 PREDICTED: hypothetical protein LOC400743 [Homo
sapiens]
Length = 190
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 36 VHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPGREPSEDFRDHLEGSG 83
+H S P ++ L +LG R P C G PS+D R +GSG
Sbjct: 115 LHSHSPPMLSSLGAPLASLGHR--PRLGCEEAGAPPSDDARCPSQGSG 160
>gi|169162103 PREDICTED: hypothetical protein LOC400743 [Homo
sapiens]
Length = 190
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 36 VHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPGREPSEDFRDHLEGSG 83
+H S P ++ L +LG R P C G PS+D R +GSG
Sbjct: 115 LHSHSPPMLSSLGAPLASLGHR--PRLGCEEAGAPPSDDARCPSQGSG 160
>gi|169162790 PREDICTED: hypothetical protein LOC400743 [Homo
sapiens]
Length = 190
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 36 VHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPGREPSEDFRDHLEGSG 83
+H S P ++ L +LG R P C G PS+D R +GSG
Sbjct: 115 LHSHSPPMLSSLGAPLASLGHR--PRLGCEEAGAPPSDDARCPSQGSG 160
>gi|85838513 pantothenate kinase 2 isoform 1 preproprotein [Homo
sapiens]
Length = 570
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 33 HPQVHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPGREPS 72
HP+VH + PS + +LL L RIP + + P R S
Sbjct: 8 HPRVHWAAPPSLSSGLHRLLFLRGTRIPSSTTLSPPRHDS 47
>gi|148747866 heparan sulfate 6-O-sulfotransferase 1 [Homo sapiens]
Length = 411
Score = 27.7 bits (60), Expect = 2.1
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 16/79 (20%)
Query: 1 MQDPEGSKESTVRRKSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLLTLGSRRIP 60
MQ + +K+ +R RQL R+ LR R E +LL +P
Sbjct: 345 MQLYDYAKDLFQQRYQYKRQLERREQRLRSR----------------EERLLHRAKEALP 388
Query: 61 DHSCVHPGREPSEDFRDHL 79
PGR P+ED+ H+
Sbjct: 389 REDADEPGRVPTEDYMSHI 407
>gi|22749325 zinc finger protein 48 [Homo sapiens]
Length = 618
Score = 27.3 bits (59), Expect = 2.7
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 33 HPQVHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPGREPSEDFRDHLEGSGPERLPRNRL 92
H + H G +P + + + S RI H H G +P +R GP ++PR+R+
Sbjct: 130 HQRTHTGEKPYKCGVCGKGFGDSSARIK-HQRTHSGEKP---YRARPPAQGPPKIPRSRI 185
Query: 93 WLFTRCLLC 101
R +C
Sbjct: 186 PAGERPTIC 194
>gi|116089284 fibrous sheath interacting protein 1 [Homo sapiens]
Length = 581
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 25 DVVLRCRPHPQVHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPGREPSEDFRDHLEGSGP 84
D + + + ++ PGS+ S ++E+ GS ++ S ++ G+E DH E S
Sbjct: 9 DGISKPASNSRIRPGSRSSNASLEVLSTEPGSFKVDTASNLNSGKE------DHSESSNT 62
Query: 85 E 85
E
Sbjct: 63 E 63
>gi|169161714 PREDICTED: tetratricopeptide repeat domain 34 [Homo
sapiens]
Length = 747
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 3 DPEGSKESTVRRKSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLL 52
DP G++ T+ ++ + F D + C + HP +G LL
Sbjct: 220 DPRGTRSDTLSPEALLHSGRFEDCLAACSRALEAHPTGSEPQGERRAALL 269
>gi|169162130 PREDICTED: tetratricopeptide repeat domain 34 [Homo
sapiens]
Length = 901
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 3 DPEGSKESTVRRKSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLL 52
DP G++ T+ ++ + F D + C + HP +G LL
Sbjct: 374 DPRGTRSDTLSPEALLHSGRFEDCLAACSRALEAHPTGSEPQGERRAALL 423
>gi|29570785 CCCTC-binding factor-like protein [Homo sapiens]
Length = 663
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 11/49 (22%)
Query: 29 RCRPHPQVHPGSQPSE-----------GTMEIQLLTLGSRRIPDHSCVH 66
+ + H + H G +P E GTM+I +L +P + C H
Sbjct: 384 KLKRHMRTHSGEKPYECHICHTRFTQSGTMKIHILQKHGENVPKYQCPH 432
>gi|145977222 zinc finger protein 154 [Homo sapiens]
Length = 437
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 31 RPHPQVHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPGREPSE 73
R H +VH GS+P E + + T S I H VH G +P E
Sbjct: 373 RKHQRVHTGSRPYECSECGKSFTQNSGLI-KHRRVHTGEKPYE 414
>gi|169206056 PREDICTED: similar to FRAS1 related extracellular
matrix protein 2 [Homo sapiens]
Length = 322
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 38 PGSQPSEGTMEIQLLTLGSRRIPDH 62
P SQP G + + L++L R+P+H
Sbjct: 48 PPSQPPPGPLPLLLVSLVQARVPEH 72
>gi|113424309 PREDICTED: similar to FRAS1 related extracellular
matrix protein 2 [Homo sapiens]
Length = 322
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 38 PGSQPSEGTMEIQLLTLGSRRIPDH 62
P SQP G + + L++L R+P+H
Sbjct: 48 PPSQPPPGPLPLLLVSLVQARVPEH 72
>gi|113424119 PREDICTED: similar to FRAS1 related extracellular
matrix protein 2 [Homo sapiens]
Length = 322
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 38 PGSQPSEGTMEIQLLTLGSRRIPDH 62
P SQP G + + L++L R+P+H
Sbjct: 48 PPSQPPPGPLPLLLVSLVQARVPEH 72
>gi|156139122 CXXC finger 6 [Homo sapiens]
Length = 2136
Score = 26.2 bits (56), Expect = 6.0
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 9 ESTVRRKSTVRQLSFRDVVLRCRPHPQVHPGSQPSEGTMEIQLLTLGSR 57
E T+ S ++ +D V C P PQ S+G IQL LGSR
Sbjct: 230 EETLNDTSGSPKMFAQDTV--CAPFPQRATPKVTSQGNPSIQLEELGSR 276
>gi|109715833 zinc finger protein 565 [Homo sapiens]
Length = 499
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 33 HPQVHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPG 68
H ++HPG +P E Q LGS+ I +H +H G
Sbjct: 465 HQRIHPGIKPYECRECGQAFILGSQLI-EHYRIHTG 499
>gi|109715831 zinc finger protein 565 [Homo sapiens]
Length = 499
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 33 HPQVHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPG 68
H ++HPG +P E Q LGS+ I +H +H G
Sbjct: 465 HQRIHPGIKPYECRECGQAFILGSQLI-EHYRIHTG 499
>gi|239746716 PREDICTED: hypothetical protein XP_002343819 [Homo
sapiens]
Length = 217
Score = 25.8 bits (55), Expect = 7.9
Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 9/46 (19%)
Query: 33 HPQVHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPGREPSEDFRDH 78
HP +HP +PS T S H +HP PS H
Sbjct: 77 HPSIHPSIRPS---------TYSSIHPSTHISIHPSIHPSIHLHIH 113
>gi|218083800 Rho GTPase-activating protein isoform 1 [Homo sapiens]
Length = 2087
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 33 HPQVHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPGREPSEDFRDHLEGS 82
H H +QP + ++ + +L SR++PD C P + R H E S
Sbjct: 1841 HHGGHGSTQPEKPSLPQKQSSLRSRKLPDMGCSLP------EHRAHQEAS 1884
>gi|29469071 Rho GTPase-activating protein isoform 2 [Homo sapiens]
Length = 1738
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 33 HPQVHPGSQPSEGTMEIQLLTLGSRRIPDHSCVHPGREPSEDFRDHLEGS 82
H H +QP + ++ + +L SR++PD C P + R H E S
Sbjct: 1492 HHGGHGSTQPEKPSLPQKQSSLRSRKLPDMGCSLP------EHRAHQEAS 1535
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.139 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,663,913
Number of Sequences: 37866
Number of extensions: 285977
Number of successful extensions: 730
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 692
Number of HSP's gapped (non-prelim): 50
length of query: 108
length of database: 18,247,518
effective HSP length: 78
effective length of query: 30
effective length of database: 15,293,970
effective search space: 458819100
effective search space used: 458819100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.