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Search of human proteins with 88853867
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|88853867 hypothetical protein LOC388135 [Homo sapiens]
(293 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|88853867 hypothetical protein LOC388135 [Homo sapiens] 597 e-171
gi|7706194 proline rich 16 [Homo sapiens] 62 8e-10
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 40 0.002
gi|51173722 bromodomain and PHD finger-containing protein 1 isof... 39 0.007
gi|51173720 bromodomain and PHD finger-containing protein 1 isof... 39 0.007
gi|224809302 xeroderma pigmentosum, complementation group C isof... 38 0.012
gi|224809295 xeroderma pigmentosum, complementation group C isof... 38 0.012
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 37 0.016
gi|222418649 mucin 7, secreted precursor [Homo sapiens] 37 0.016
gi|222418645 mucin 7, secreted precursor [Homo sapiens] 37 0.016
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 36 0.046
gi|13129104 coiled-coil domain containing 86 [Homo sapiens] 35 0.060
gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H... 35 0.078
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 35 0.078
gi|194018497 FYVE, RhoGEF and PH domain containing 5 [Homo sapiens] 35 0.10
gi|66773344 hypothetical protein LOC140710 [Homo sapiens] 34 0.13
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens] 34 0.17
gi|42544243 dynamin 3 isoform a [Homo sapiens] 34 0.17
gi|209915561 dynamin 3 isoform b [Homo sapiens] 34 0.17
gi|171543895 ataxin 2 [Homo sapiens] 33 0.23
gi|118600967 shroom family member 4 [Homo sapiens] 33 0.30
gi|226443002 jumonji, AT rich interactive domain 1D isoform 3 [H... 33 0.30
gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Ho... 33 0.30
gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [H... 33 0.30
gi|92091572 dedicator of cytokinesis 4 [Homo sapiens] 33 0.39
gi|91992155 hydrogen voltage-gated channel 1 [Homo sapiens] 33 0.39
gi|91992153 hydrogen voltage-gated channel 1 [Homo sapiens] 33 0.39
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 33 0.39
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 33 0.39
gi|148368962 NKF3 kinase family member [Homo sapiens] 33 0.39
>gi|88853867 hypothetical protein LOC388135 [Homo sapiens]
Length = 293
Score = 597 bits (1538), Expect = e-171
Identities = 293/293 (100%), Positives = 293/293 (100%)
Query: 1 MNIRGAPDLGQPSDDPSSGGERERIRQRMKMVIGQLEGILRELKEVAKELREVVSQIDKL 60
MNIRGAPDLGQPSDDPSSGGERERIRQRMKMVIGQLEGILRELKEVAKELREVVSQIDKL
Sbjct: 1 MNIRGAPDLGQPSDDPSSGGERERIRQRMKMVIGQLEGILRELKEVAKELREVVSQIDKL 60
Query: 61 TSDFDFELEPDDWTTATVSSTSSSDKAGMGGPFDLGHLDFMTADILSDSWEFCSFLDVST 120
TSDFDFELEPDDWTTATVSSTSSSDKAGMGGPFDLGHLDFMTADILSDSWEFCSFLDVST
Sbjct: 61 TSDFDFELEPDDWTTATVSSTSSSDKAGMGGPFDLGHLDFMTADILSDSWEFCSFLDVST 120
Query: 121 PSDSVDGPESTRPGAGPDYRLMNGGTPIPNGPRVETPDSSSEEAFGAGPTVKSQLPQRTP 180
PSDSVDGPESTRPGAGPDYRLMNGGTPIPNGPRVETPDSSSEEAFGAGPTVKSQLPQRTP
Sbjct: 121 PSDSVDGPESTRPGAGPDYRLMNGGTPIPNGPRVETPDSSSEEAFGAGPTVKSQLPQRTP 180
Query: 181 GTRERVRFSDKVLYHALCCDDEEGDGEQEVEEEEVGLPPEPAHTEAHAGPHKPSPAPYKS 240
GTRERVRFSDKVLYHALCCDDEEGDGEQEVEEEEVGLPPEPAHTEAHAGPHKPSPAPYKS
Sbjct: 181 GTRERVRFSDKVLYHALCCDDEEGDGEQEVEEEEVGLPPEPAHTEAHAGPHKPSPAPYKS 240
Query: 241 RRSPLTSRHSGSTLAPEQTRRVTRNSSTQTVSDKSTQTVLPYTATRQKARGKN 293
RRSPLTSRHSGSTLAPEQTRRVTRNSSTQTVSDKSTQTVLPYTATRQKARGKN
Sbjct: 241 RRSPLTSRHSGSTLAPEQTRRVTRNSSTQTVSDKSTQTVLPYTATRQKARGKN 293
>gi|7706194 proline rich 16 [Homo sapiens]
Length = 281
Score = 61.6 bits (148), Expect = 8e-10
Identities = 80/279 (28%), Positives = 110/279 (39%), Gaps = 43/279 (15%)
Query: 35 QLEGILRELKEVAKELREVVSQIDKLTSDFDFELEPDDWT-TATVSSTSSSDKAGMGGPF 93
Q++ IL + VV QID LTSD E E D + T T++S+SS A
Sbjct: 13 QVQAILLPQPASVRHYAWVVDQIDTLTSDLQLEDEMTDSSKTDTLNSSSSGTTASSLEKI 72
Query: 94 DLGHLDFMTADILSDSWEFCSFLDVS------------TPSDSVDGPESTRPGAGP---- 137
+ A ++ + L V TP D P+ P A P
Sbjct: 73 KVQ----ANAPLIKPPAHPSAILTVLRKPNPPPPPPRLTPVKCED-PKRVVPTANPVKTN 127
Query: 138 DYRLMNGGTP-----IPNGPRVETPDSSSEEA---FGAGPTVKSQLPQRTPGTRERVRFS 189
L NGG P IPNG P+S+ ++A K + PQ P RERVRF+
Sbjct: 128 GTLLRNGGLPGGPNKIPNGDICCIPNSNLDKAPVQLLMHRPEKDRCPQAGP--RERVRFN 185
Query: 190 DKVLYHALCCDDEEGDGEQEVEEEEVGLPPEPAHTEA---HAGPHKP-----SPAPYKSR 241
+KV YH C D D ++ EV L EP H H GP P P P ++
Sbjct: 186 EKVQYHGYCPD---CDTRYNIKNREVHLHSEPVHPPGKIPHQGPPLPPTPHLPPFPLENG 242
Query: 242 RSPLTSRHSGSTLAPEQTRRVTRNSSTQTVSDKSTQTVL 280
++ +S + P T +T+ KST T +
Sbjct: 243 GMGISHSNSFPPIRPATVPPPTAPKPQKTILRKSTTTTV 281
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 40.0 bits (92), Expect = 0.002
Identities = 42/152 (27%), Positives = 56/152 (36%), Gaps = 19/152 (12%)
Query: 119 STPSDSVDGPESTRPGAGPDYRLM------NGGTPIPNGPRVETPDSSSEEAFGAGPTVK 172
S+PS S P S P GP + L G T P G RV + + E AGP K
Sbjct: 468 SSPSTSWHRPASPCPSPGPGHTLPPKPPSPRGTTASPKG-RVRRKEEAKESPSAAGPEDK 526
Query: 173 SQLPQRTPGTRERVRFSDKVLYHALCCDDEEGDGEQEVEEEEVGLPPEPAHTEAHAGPHK 232
SQ +R +E + A EQ PP T+A
Sbjct: 527 SQSKRRASNEKESAAPASPAPSPAPSPTPAPPQKEQ---------PPAETPTDAAVLTSP 577
Query: 233 PSPAPYKSRRSPL---TSRHSGSTLAPEQTRR 261
P+PAP + P+ T R + L E+ R+
Sbjct: 578 PAPAPPVTPSKPMAGTTDREEATRLLAEKRRQ 609
>gi|51173722 bromodomain and PHD finger-containing protein 1 isoform
2 [Homo sapiens]
Length = 1214
Score = 38.5 bits (88), Expect = 0.007
Identities = 35/116 (30%), Positives = 45/116 (38%), Gaps = 33/116 (28%)
Query: 195 HALCCD-DEEGDG---EQEVEEEEVGLPPEPAHTEAH-----------------AGPHKP 233
H CD D + D E +E GL P + T AH AGP K
Sbjct: 848 HPAACDKDGQTDSAAEESSSQETSKGLGPNMSSTPAHEVGRRTSVLFSKKNPKTAGPPKR 907
Query: 234 SPAPYKSRRSPLTSRHSGSTLAPEQT------------RRVTRNSSTQTVSDKSTQ 277
P K+R S +T H GS + P Q R +SS+ + SDKST+
Sbjct: 908 PGRPPKNRESQMTPSHGGSPVGPPQLPIMSSLRQRKRGRSPRPSSSSDSDSDKSTE 963
>gi|51173720 bromodomain and PHD finger-containing protein 1 isoform
1 [Homo sapiens]
Length = 1220
Score = 38.5 bits (88), Expect = 0.007
Identities = 35/116 (30%), Positives = 45/116 (38%), Gaps = 33/116 (28%)
Query: 195 HALCCD-DEEGDG---EQEVEEEEVGLPPEPAHTEAH-----------------AGPHKP 233
H CD D + D E +E GL P + T AH AGP K
Sbjct: 854 HPAACDKDGQTDSAAEESSSQETSKGLGPNMSSTPAHEVGRRTSVLFSKKNPKTAGPPKR 913
Query: 234 SPAPYKSRRSPLTSRHSGSTLAPEQT------------RRVTRNSSTQTVSDKSTQ 277
P K+R S +T H GS + P Q R +SS+ + SDKST+
Sbjct: 914 PGRPPKNRESQMTPSHGGSPVGPPQLPIMSSLRQRKRGRSPRPSSSSDSDSDKSTE 969
>gi|224809302 xeroderma pigmentosum, complementation group C isoform
2 [Homo sapiens]
Length = 903
Score = 37.7 bits (86), Expect = 0.012
Identities = 43/156 (27%), Positives = 60/156 (38%), Gaps = 8/156 (5%)
Query: 101 MTADILSDSWEFCSFLDVSTPSDSVDGPESTRPGAGPDYRLMNGGTPIPNGPRVETPDSS 160
+TAD S L+ T + G + A R G G + + SS
Sbjct: 302 LTADPGGSSETSSQVLENHTKPKTSKGTKQEETFAKGTCRPSAKGKRNKGGRKKRSKPSS 361
Query: 161 SEEAFGAGPTVKSQLPQRTPGTRERVRFSDKVLYHALCCDDEEGDGEQEVEEEEVGLPPE 220
SEE G G + + QR P RER R + +V Y DE G G E G +
Sbjct: 362 SEEDEGPGDK-QEKATQRRPHGRER-RVASRVSYKEESGSDEAGSGSD--FELSSGEASD 417
Query: 221 PAHTEAHAGPHK----PSPAPYKSRRSPLTSRHSGS 252
P+ ++ GP K P+P K+ + H GS
Sbjct: 418 PSDEDSEPGPPKQRKAPAPQRTKAGSKSASRTHRGS 453
>gi|224809295 xeroderma pigmentosum, complementation group C isoform
1 [Homo sapiens]
Length = 940
Score = 37.7 bits (86), Expect = 0.012
Identities = 43/156 (27%), Positives = 60/156 (38%), Gaps = 8/156 (5%)
Query: 101 MTADILSDSWEFCSFLDVSTPSDSVDGPESTRPGAGPDYRLMNGGTPIPNGPRVETPDSS 160
+TAD S L+ T + G + A R G G + + SS
Sbjct: 339 LTADPGGSSETSSQVLENHTKPKTSKGTKQEETFAKGTCRPSAKGKRNKGGRKKRSKPSS 398
Query: 161 SEEAFGAGPTVKSQLPQRTPGTRERVRFSDKVLYHALCCDDEEGDGEQEVEEEEVGLPPE 220
SEE G G + + QR P RER R + +V Y DE G G E G +
Sbjct: 399 SEEDEGPGDK-QEKATQRRPHGRER-RVASRVSYKEESGSDEAGSGSD--FELSSGEASD 454
Query: 221 PAHTEAHAGPHK----PSPAPYKSRRSPLTSRHSGS 252
P+ ++ GP K P+P K+ + H GS
Sbjct: 455 PSDEDSEPGPPKQRKAPAPQRTKAGSKSASRTHRGS 490
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 37.4 bits (85), Expect = 0.016
Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 18/173 (10%)
Query: 120 TPSDSVDGPESTRPGAGPDYRLMNGGTPIPNGPRVETPDSSSE-EAFGAGPTVKSQLPQR 178
TPS + P S+ A P+ P P P SS+ E A PT + P
Sbjct: 194 TPSATTQAPPSS--SAPPE---TTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAP 248
Query: 179 TPGTRERVRFSDKVLYHALCCDDEEGDGEQEVEEEEVGLPPEPAHTEAHAGPHKPS-PAP 237
+ + A D E PP P+ T P PS PAP
Sbjct: 249 LSSSAPPETTAVPPTPSATTLDPSSASAPPET----TAAPPTPSATT----PAPPSSPAP 300
Query: 238 YKSRRSPLTSRHSG-STLAPE--QTRRVTRNSSTQTVSDKSTQTVLPYTATRQ 287
++ +P+T+ +S +TLAP+ +T + +T +V+ ++T T P +A Q
Sbjct: 301 QETTAAPITTPNSSPTTLAPDTSETSAAPTHQTTTSVTTQTTTTKQPTSAPGQ 353
Score = 29.6 bits (65), Expect = 3.3
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 217 LPPEPAHTEAHAGPHKPSPAPYKSRRSPLTSRHSGSTLAPEQTRRVTRNSSTQTVSDKST 276
LPP P + PH+P P K+ +S + + +A Q VT S++ ++
Sbjct: 74 LPPSPNNPPKFPNPHQPPKHPDKN-----SSVVNPTLVATTQIPSVTFPSASTKITTLPN 128
Query: 277 QTVLPYTATRQKAR 290
T LP AT +R
Sbjct: 129 VTFLPQNATTISSR 142
>gi|222418649 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 37.4 bits (85), Expect = 0.016
Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 18/173 (10%)
Query: 120 TPSDSVDGPESTRPGAGPDYRLMNGGTPIPNGPRVETPDSSSE-EAFGAGPTVKSQLPQR 178
TPS + P S+ A P+ P P P SS+ E A PT + P
Sbjct: 194 TPSATTQAPPSS--SAPPE---TTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAP 248
Query: 179 TPGTRERVRFSDKVLYHALCCDDEEGDGEQEVEEEEVGLPPEPAHTEAHAGPHKPS-PAP 237
+ + A D E PP P+ T P PS PAP
Sbjct: 249 LSSSAPPETTAVPPTPSATTLDPSSASAPPET----TAAPPTPSATT----PAPPSSPAP 300
Query: 238 YKSRRSPLTSRHSG-STLAPE--QTRRVTRNSSTQTVSDKSTQTVLPYTATRQ 287
++ +P+T+ +S +TLAP+ +T + +T +V+ ++T T P +A Q
Sbjct: 301 QETTAAPITTPNSSPTTLAPDTSETSAAPTHQTTTSVTTQTTTTKQPTSAPGQ 353
Score = 29.6 bits (65), Expect = 3.3
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 217 LPPEPAHTEAHAGPHKPSPAPYKSRRSPLTSRHSGSTLAPEQTRRVTRNSSTQTVSDKST 276
LPP P + PH+P P K+ +S + + +A Q VT S++ ++
Sbjct: 74 LPPSPNNPPKFPNPHQPPKHPDKN-----SSVVNPTLVATTQIPSVTFPSASTKITTLPN 128
Query: 277 QTVLPYTATRQKAR 290
T LP AT +R
Sbjct: 129 VTFLPQNATTISSR 142
>gi|222418645 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 37.4 bits (85), Expect = 0.016
Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 18/173 (10%)
Query: 120 TPSDSVDGPESTRPGAGPDYRLMNGGTPIPNGPRVETPDSSSE-EAFGAGPTVKSQLPQR 178
TPS + P S+ A P+ P P P SS+ E A PT + P
Sbjct: 194 TPSATTQAPPSS--SAPPE---TTAAPPTPPATTPAPPSSSAPPETTAAPPTPSATTPAP 248
Query: 179 TPGTRERVRFSDKVLYHALCCDDEEGDGEQEVEEEEVGLPPEPAHTEAHAGPHKPS-PAP 237
+ + A D E PP P+ T P PS PAP
Sbjct: 249 LSSSAPPETTAVPPTPSATTLDPSSASAPPET----TAAPPTPSATT----PAPPSSPAP 300
Query: 238 YKSRRSPLTSRHSG-STLAPE--QTRRVTRNSSTQTVSDKSTQTVLPYTATRQ 287
++ +P+T+ +S +TLAP+ +T + +T +V+ ++T T P +A Q
Sbjct: 301 QETTAAPITTPNSSPTTLAPDTSETSAAPTHQTTTSVTTQTTTTKQPTSAPGQ 353
Score = 29.6 bits (65), Expect = 3.3
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 217 LPPEPAHTEAHAGPHKPSPAPYKSRRSPLTSRHSGSTLAPEQTRRVTRNSSTQTVSDKST 276
LPP P + PH+P P K+ +S + + +A Q VT S++ ++
Sbjct: 74 LPPSPNNPPKFPNPHQPPKHPDKN-----SSVVNPTLVATTQIPSVTFPSASTKITTLPN 128
Query: 277 QTVLPYTATRQKAR 290
T LP AT +R
Sbjct: 129 VTFLPQNATTISSR 142
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 35.8 bits (81), Expect = 0.046
Identities = 43/181 (23%), Positives = 72/181 (39%), Gaps = 22/181 (12%)
Query: 121 PSDSVDGPESTRPGAGPDYRLMNGG-----------TPIPNGPRVETPDSSSE-EAFGAG 168
P+ S GPE + G L+N G T +P GP +P SSE + GA
Sbjct: 380 PAGSAAGPEQPQAGLLTPSTLLNLGGLTSSVLKTPITSVPLGPLASSPTKSSEGKDSGAA 439
Query: 169 PTVKSQL------PQRTPGTRERVRFSDKVLYHALCCDDEEGDGEQEVEEEEVGLPPEPA 222
K ++ ++ E ++ ++EE + E+E +E GL P
Sbjct: 440 EGEKQEVGDGDCFSEKVEPAEEEAEEEEEEEEAEEEEEEEEEEEEEEEDEGCKGLFPSEL 499
Query: 223 HTEAHAGPH-KPSPAPYKSRRSPLTSRH---SGSTLAPEQTRRVTRNSSTQTVSDKSTQT 278
E PH +P A S + L + S S L P + ++R +++ + + S+
Sbjct: 500 DEELEDRPHEEPGAAAGSSSKKDLALSNQSISNSPLMPNVLQTLSRGTASTSSNSASSFV 559
Query: 279 V 279
V
Sbjct: 560 V 560
>gi|13129104 coiled-coil domain containing 86 [Homo sapiens]
Length = 360
Score = 35.4 bits (80), Expect = 0.060
Identities = 46/152 (30%), Positives = 58/152 (38%), Gaps = 29/152 (19%)
Query: 128 PESTR-PGAGPDYRLMNGGTP------IPNGPRV------ETPDSSSEEAFGAGPTVKSQ 174
PE TR PG+ P + G+P P PR+ E+P E A P +
Sbjct: 39 PEETREPGSPPSVQRAGLGSPERPPKTSPGSPRLQQGAGLESPQGQPEPG-AASPQRQQD 97
Query: 175 L----PQRTPG-TRERVRFSDKVLYHALCCDDEEG----DGEQEVEEEEVG-----LPPE 220
L PQR P + E R K A C ++G + Q EE G LPP
Sbjct: 98 LHLESPQRQPEYSPESPRCQPKPSEEAPKCSQDQGVLASELAQNKEELTPGAPQHQLPPV 157
Query: 221 PAHTEAHAGPHKPSPAPYKSRRSPLTSRHSGS 252
P E + G P P P + LT R GS
Sbjct: 158 PGSPEPYPGQQAPGPEPSQPLLE-LTPRAPGS 188
>gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo
sapiens]
Length = 1251
Score = 35.0 bits (79), Expect = 0.078
Identities = 40/205 (19%), Positives = 70/205 (34%), Gaps = 10/205 (4%)
Query: 44 KEVAKELREVVSQIDKLTSDFDFELEPDDWTTATVSSTSSSDKAGMGGPFDLGHLDFMTA 103
+E KE E + + ++ + E EP DW + ++ A G P H +
Sbjct: 411 EEAKKEAEEKAKEEAEEVAEEEAEKEPQDWAETKEEPEAEAEAASSGVPATKQHPEVQVE 470
Query: 104 DILSDSWEFCSFLDVSTPSDSVDGPESTRPGAGPDYRLMNGGTPIPNGPRVETPDSSSEE 163
D +DS C + P +V P S A D ++ + ++ + D +EE
Sbjct: 471 DTDADS---CPLMAEENPPSTVLPPPSP---AKSDTLIVPSSASGTHRKKLPSEDDEAEE 524
Query: 164 AFGAGPTVKSQLPQRTPGTRERVRFSDKVLYHALCCDDEEGDGEQEV----EEEEVGLPP 219
P + P T + D+ A D QE+ +E +
Sbjct: 525 LKALSPAESPVVAWSDPTTPKDTDGQDRAASTASTNSAIINDRLQELVKLFKERTEKVKE 584
Query: 220 EPAHTEAHAGPHKPSPAPYKSRRSP 244
+ + + P P+P K P
Sbjct: 585 KLIDPDVTSDEESPKPSPAKKAPEP 609
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 35.0 bits (79), Expect = 0.078
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 19/144 (13%)
Query: 152 PRVETPDSSSEEAFGAGPTVKSQLPQRTPGTRERVRFSDKVLYHALCCDDEEGDGEQEVE 211
PR T + E++ G G VK + ++ PG +E K D E +++ E
Sbjct: 73 PRKMTSHNGMEDSGGGGTGVKKKRKKKEPGDQEGAAKGSK---------DREPKPKRKRE 123
Query: 212 EEEVGLP---PEPAHTEAHAGPHKPSPAPYKSRRSPLTSRHSGSTLAPEQTRRVTRNSST 268
+E P EP + H P + A K R P R + T ++ R T +S+
Sbjct: 124 PKEPKEPRKAKEPKKAKEHKEPKQKDGA--KKARKP---REASGTKEAKEKRSCT-DSAA 177
Query: 269 QTVSDKSTQTVLPYTATRQKARGK 292
+T S K+++ P T +K +GK
Sbjct: 178 RTKSRKASKEQGP-TPVEKKKKGK 200
>gi|194018497 FYVE, RhoGEF and PH domain containing 5 [Homo sapiens]
Length = 1462
Score = 34.7 bits (78), Expect = 0.10
Identities = 39/134 (29%), Positives = 52/134 (38%), Gaps = 11/134 (8%)
Query: 111 EFCSFLDVSTPSDSVDGPESTRPGA-------GPDYRLMNGGTPIPNGP-RVETPDSSSE 162
E C DSV P + GA G D L + G + P +E S E
Sbjct: 107 EACGLEGTGAGEDSV-APAAPGAGALSREGEEGTDLALEDEGEGCADEPGTLEQVSRSEE 165
Query: 163 EAFGAGPTVKSQLPQRTPGTRERVRFSDKVLYHALCCDDEEGD--GEQEVEEEEVGLPPE 220
E P + L P E V SD +L H D E D GE E ++EE +
Sbjct: 166 EEKLVQPHRECSLEDSGPWAGEGVFQSDLLLPHIHGEDQEPPDTPGEAEEDDEEGCASTD 225
Query: 221 PAHTEAHAGPHKPS 234
PA + +GP +P+
Sbjct: 226 PAGADEGSGPDRPT 239
>gi|66773344 hypothetical protein LOC140710 [Homo sapiens]
Length = 1016
Score = 34.3 bits (77), Expect = 0.13
Identities = 53/206 (25%), Positives = 83/206 (40%), Gaps = 39/206 (18%)
Query: 21 ERERIRQRMKMVIGQLEGILRELKEVAKELREVVSQIDKLTSDF---DFELEPDDWTTAT 77
ER ++++++V +L+G +++++ KEL+ +SQ+ K + ELE D +
Sbjct: 841 ERNWSQEKLQLV-ERLQGEKQQVEQQVKELQNRLSQLQKAADPWVLKHSELEKQDNSWKE 899
Query: 78 VSSTSSSDKAGMGGPFDLGHLDFMTADILSDSWEFCSFLDVSTPSDSVDGPESTRPGAGP 137
S DK + +LG +S EF S LD S AG
Sbjct: 900 TRSEKIHDKEAV-SEVELGGNGLKRTKSVSSMSEFESLLDCSPYL------------AGG 946
Query: 138 DYRLMNGGTPIPNGPRVETPDSSSEEAFGAGPTVKSQLPQRTPGTRERVRFSDKVLYH-- 195
D R G +PN P AFG V S+ T+E+ S + H
Sbjct: 947 DAR----GKKLPNNP-----------AFG---FVSSEPGDPEKDTKEKPGLSSRDCNHLG 988
Query: 196 ALCCDDEEGDGEQEVEEEEVGLPPEP 221
AL C D G Q++ + PP+P
Sbjct: 989 ALACQDP--PGSQKLPFLLILAPPQP 1012
>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
Length = 1243
Score = 33.9 bits (76), Expect = 0.17
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 14/77 (18%)
Query: 145 GTPIPNGPRVETPDSSSEEAFGAGPTVKSQLPQRTPGTRERVRFSDKVLYHALCCDDEEG 204
G+P P+ P++ + S +E++ G GP TRE + SD+ +EEG
Sbjct: 1040 GSPKPSTPQLTSESSDTEDSAGGGPE-----------TREALAESDRAAEGLGAGVEEEG 1088
Query: 205 DGEQEVEEEEVGLPPEP 221
D + +E +VG P+P
Sbjct: 1089 D---DGKEPQVGGSPQP 1102
>gi|42544243 dynamin 3 isoform a [Homo sapiens]
Length = 863
Score = 33.9 bits (76), Expect = 0.17
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 127 GPESTRPGAGPDYRLMNGGTPIPNGPRVETPDSSSEEAFGAGPTVKSQLPQRTP 180
GP P GP +G P+P P P SS ++FGA P V S+ P R P
Sbjct: 788 GPAPAIPSPGPH----SGAPPVPFRPGPLPPFPSSSDSFGAPPQVPSR-PTRAP 836
>gi|209915561 dynamin 3 isoform b [Homo sapiens]
Length = 859
Score = 33.9 bits (76), Expect = 0.17
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 127 GPESTRPGAGPDYRLMNGGTPIPNGPRVETPDSSSEEAFGAGPTVKSQLPQRTP 180
GP P GP +G P+P P P SS ++FGA P V S+ P R P
Sbjct: 784 GPAPAIPSPGPH----SGAPPVPFRPGPLPPFPSSSDSFGAPPQVPSR-PTRAP 832
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 33.5 bits (75), Expect = 0.23
Identities = 36/142 (25%), Positives = 46/142 (32%), Gaps = 45/142 (31%)
Query: 119 STPSDSVDGPESTRPGAGPDYRLMNGGTPIPNGPRVETPDSSSEEAFGAGPTVKSQLPQR 178
S PS S P +G D R++NGG P P+ +P S + +GP S P+
Sbjct: 523 SMPSRSTSHTSDFNPNSGSDQRVVNGGVPWPS--PCPSPSSRPPSRYQSGP--NSLPPRA 578
Query: 179 TPGTRERVRFSDKVLYHALCCDDEEGDGEQEVEEEEVGLPPE-----PAHTEAHAGPHKP 233
TR R PP P+H AH P
Sbjct: 579 ATPTRPPSR------------------------------PPSRPSRPPSHPSAHGSPAPV 608
Query: 234 SPAPYK------SRRSPLTSRH 249
S P + R SP RH
Sbjct: 609 STMPKRMSSEGPPRMSPKAQRH 630
Score = 29.3 bits (64), Expect = 4.3
Identities = 15/40 (37%), Positives = 18/40 (45%)
Query: 217 LPPEPAHTEAHAGPHKPSPAPYKSRRSPLTSRHSGSTLAP 256
L + AH A PH P P P + S+H GS AP
Sbjct: 1129 LAQQYAHPNATLHPHTPHPQPSATPTGQQQSQHGGSHPAP 1168
>gi|118600967 shroom family member 4 [Homo sapiens]
Length = 1493
Score = 33.1 bits (74), Expect = 0.30
Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 14/121 (11%)
Query: 152 PRVETPDSSSEEAFGAGPTVKSQLPQRTPGTRERVRFSDKVLYHALCCDDEEGDGEQEVE 211
PR P+ F A K Q Q+ E ++ ++EE + E+E E
Sbjct: 1102 PRPPPPNWEKYRLFRAAQQQKQQQQQQKQQEEEEEEEEEE--------EEEEEEEEEEAE 1153
Query: 212 EEEVGLPPEPAHTEAHAGPHKPSPAPYKSRRSPLTSRH-----SGSTLAPEQTRRVTRNS 266
EEE LPP+ +E +G +P + PL+ H GS P + +S
Sbjct: 1154 EEEEELPPQYFSSET-SGSCALNPEEVLEQPQPLSFGHLEGSRQGSQSVPAEQESFALHS 1212
Query: 267 S 267
S
Sbjct: 1213 S 1213
>gi|226443002 jumonji, AT rich interactive domain 1D isoform 3 [Homo
sapiens]
Length = 1482
Score = 33.1 bits (74), Expect = 0.30
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 123 DSVDGPESTRPGAGPDYRLMNGGTPIPNGPRVETPDS 159
DSV PE+ PG G D L++ P GP +E P++
Sbjct: 1285 DSVTSPENMAPGKGSDLELLSSLLPQLTGPVLELPEA 1321
>gi|33356560 jumonji, AT rich interactive domain 1D isoform 2 [Homo
sapiens]
Length = 1539
Score = 33.1 bits (74), Expect = 0.30
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 123 DSVDGPESTRPGAGPDYRLMNGGTPIPNGPRVETPDS 159
DSV PE+ PG G D L++ P GP +E P++
Sbjct: 1342 DSVTSPENMAPGKGSDLELLSSLLPQLTGPVLELPEA 1378
>gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [Homo
sapiens]
Length = 1570
Score = 33.1 bits (74), Expect = 0.30
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 123 DSVDGPESTRPGAGPDYRLMNGGTPIPNGPRVETPDS 159
DSV PE+ PG G D L++ P GP +E P++
Sbjct: 1373 DSVTSPENMAPGKGSDLELLSSLLPQLTGPVLELPEA 1409
>gi|92091572 dedicator of cytokinesis 4 [Homo sapiens]
Length = 1966
Score = 32.7 bits (73), Expect = 0.39
Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 149 PNG-PRVETPDSSSEEAFGAGPTVKSQLPQRTPGTRERV-RFSDKVLYHALCCDDEEGDG 206
PNG PRV + P +P+R+P + V R+S L + G
Sbjct: 1604 PNGSPRV----CRNSAPASVSPDGTRVIPRRSPLSYPAVNRYSSSSLSSQASAEVSNITG 1659
Query: 207 EQEVEEEEVGLPPEPAHTEAH----AGPHKPSPAPYKSRRSPLTS---RHS--GSTLAPE 257
+ E +E + P P+ + A P+ S AP +R SPL S +HS S L+P
Sbjct: 1660 QSESSDEVFNMQPSPSTSSLSSTHSASPNVTSSAPSSARASPLLSDKHKHSRENSCLSPR 1719
Query: 258 Q 258
+
Sbjct: 1720 E 1720
>gi|91992155 hydrogen voltage-gated channel 1 [Homo sapiens]
Length = 273
Score = 32.7 bits (73), Expect = 0.39
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 194 YHALCCDDEEGDGEQEVEEEEVGLPPEPAHTEAHAGPHKPSPAPYKSRRSPLTSR 248
YHA + ++ + E+E EEEE P + E A +PAP + R+PL R
Sbjct: 35 YHAWNINYKKWENEEEEEEEEQPPPTPVSGEEGRAAAPDVAPAPGPAPRAPLDFR 89
>gi|91992153 hydrogen voltage-gated channel 1 [Homo sapiens]
Length = 273
Score = 32.7 bits (73), Expect = 0.39
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 194 YHALCCDDEEGDGEQEVEEEEVGLPPEPAHTEAHAGPHKPSPAPYKSRRSPLTSR 248
YHA + ++ + E+E EEEE P + E A +PAP + R+PL R
Sbjct: 35 YHAWNINYKKWENEEEEEEEEQPPPTPVSGEEGRAAAPDVAPAPGPAPRAPLDFR 89
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 32.7 bits (73), Expect = 0.39
Identities = 36/137 (26%), Positives = 52/137 (37%), Gaps = 21/137 (15%)
Query: 118 VSTPSDSVDGPESTRPGAGPDYRLMNGGTPIPNGPRVETPDSSSEEAFGAGPTVKSQLPQ 177
VS P + GPE+ R G+ D L GTP P P PD E FG ++P+
Sbjct: 717 VSVPPRLLPGPENHRAGSNEDPILAPSGTPPPTIP----PD----ETFG------GRVPR 762
Query: 178 RTPGTRERVRFSDKVLYHALCCDDEEGDGEQEVEEEEVGLPPEPAHTEAHAGPHKPSPAP 237
++ SD + E D + V GLPP P + A P +P
Sbjct: 763 PAFVHYDKEEASDVEI-------SLESDSDDSVVIVPEGLPPLPPPPPSGATPPPIAPTG 815
Query: 238 YKSRRSPLTSRHSGSTL 254
+ P+ ++ L
Sbjct: 816 PPTASPPVPAKEEPEEL 832
Score = 28.1 bits (61), Expect = 9.6
Identities = 23/84 (27%), Positives = 28/84 (33%), Gaps = 12/84 (14%)
Query: 154 VETPDSSSEEAFGAGPTVKSQLPQRTPGTRERVRFSDKVLYHALCCDDEEGDGEQEVEEE 213
VE P + E PT+ P+ P E R + G QE+ EE
Sbjct: 1009 VEEPGTEEERGADTAPTLA---PEALPSQGEVEREGES---------PAAGPPPQELVEE 1056
Query: 214 EVGLPPEPAHTEAHAGPHKPSPAP 237
E PP E G K P P
Sbjct: 1057 EPSAPPTLLEEETEDGSDKVQPPP 1080
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 32.7 bits (73), Expect = 0.39
Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 217 LPPEPAHTEAHAGPHKPSPAPYKSRRSPLTSRHSGSTLAPEQTRRVTRNSSTQTVSDKST 276
L P P T A PH P R P R ST+ P ++ V R STQ V++ ST
Sbjct: 431 LRPSPRWTAQGARPHPFQNMPGAIR--PAAPRPPFSTMRPASSQ-VPRVMSTQRVANTST 487
Query: 277 QTVLPYTATRQKA 289
QT+ P A A
Sbjct: 488 QTMGPRPAAAAAA 500
>gi|148368962 NKF3 kinase family member [Homo sapiens]
Length = 1746
Score = 32.7 bits (73), Expect = 0.39
Identities = 43/180 (23%), Positives = 68/180 (37%), Gaps = 13/180 (7%)
Query: 120 TPSDSVDGPESTRPGAGPDYRLMNGGTPIPNGPRVETPDS-----SSEEAFGAGPT--VK 172
T + G STR A + P P ETP S S EE + P V
Sbjct: 748 TQESQMVGSSSTREKASTVLSQIVASIQPPQSPP-ETPQSGPKACSVEELYAIPPDADVA 806
Query: 173 SQLPQRTPGTRERVRFSDKVLYHALCCDDEEGDGEQEVEEEEVGLPPEPAHTEAHAGPHK 232
P+ TP R + F+ + A + +V+++ P P+ ++ P
Sbjct: 807 KSTPKSTP-VRPKSLFTSQPSGEAEAPQTTDSP-TTKVQKDPSIKPVTPSPSKLVTSPQS 864
Query: 233 PSPAPYKSRRSPLTSRHSGSTLAPEQTRRVTRNSSTQTVSDKSTQTVLPYTATRQKARGK 292
PAP+ RS + H+G+ L T S T++ ++VL +R+ A K
Sbjct: 865 EPPAPFPPPRSTSSPYHAGNLLQRHFTNWTKPTSPTRST---EAESVLHSEGSRRAADAK 921
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.129 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,900,767
Number of Sequences: 37866
Number of extensions: 804654
Number of successful extensions: 5213
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 215
Number of HSP's that attempted gapping in prelim test: 4784
Number of HSP's gapped (non-prelim): 635
length of query: 293
length of database: 18,247,518
effective HSP length: 101
effective length of query: 192
effective length of database: 14,423,052
effective search space: 2769225984
effective search space used: 2769225984
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.