Guide to the Human Genome
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Name: C15orf59 Sequence: fasta or formatted (293aa) NCBI GI: 88853867
Description:

hypothetical protein LOC388135

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         16           1
 C cysteine            1.0          3           2
 D aspartate           7.8         23           2
 E glutamate           8.9         26           4
 F phenylalanine       2.7          8           1
 G glycine             8.5         25           2
 H histidine           2.0          6           1
 I isoleucine          2.4          7           1
 K lysine              4.1         12           1
 L leucine             6.5         19           1
 M methionine          2.0          6           1
 N asparagine          1.7          5           1
 P proline             8.9         26           2
 Q glutamine           3.8         11           1
 R arginine            7.5         22           2
 S serine             10.9         32           3
 T threonine           8.2         24           2
 V valine              5.5         16           2
 W tryptophan          0.7          2           1
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC388135 
PRR16                 0.065   proline rich 16 
MAP7D1                0.026   MAP7 domain containing 1 
BRPF1                 0.024   bromodomain and PHD finger-containing protein 1 isof...
BRPF1                 0.024   bromodomain and PHD finger-containing protein 1 isof...
XPC                   0.023   xeroderma pigmentosum, complementation group C isof...
XPC                   0.023   xeroderma pigmentosum, complementation group C isof...
MUC7                  0.021   mucin 7, secreted precursor 
MUC7                  0.021   mucin 7, secreted precursor 
MUC7                  0.021   mucin 7, secreted precursor 
ZFHX3                 0.019   AT-binding transcription factor 1 
CCDC86                0.017   coiled-coil domain containing 86 
CNGB1                 0.017   cyclic nucleotide gated channel beta 1 isoform a [H...
CHD6                  0.017   chromodomain helicase DNA binding protein 6 
FGD5                  0.017   FYVE, RhoGEF and PH domain containing 5 
C20orf117             0.016   hypothetical protein LOC140710 
WNK4                  0.016   WNK lysine deficient protein kinase 4 
DNM3                  0.016   dynamin 3 isoform a 
DNM3                  0.016   dynamin 3 isoform b 
ATXN2                 0.014   ataxin 2 
SHROOM4               0.014   shroom family member 4 
KDM5D                 0.014   jumonji, AT rich interactive domain 1D isoform 3 [H...
KDM5D                 0.014   jumonji, AT rich interactive domain 1D isoform 2 [Ho...
KDM5D                 0.014   jumonji, AT rich interactive domain 1D isoform 1 [H...
DOCK4                 0.014   dedicator of cytokinesis 4 
HVCN1                 0.014   hydrogen voltage-gated channel 1 
HVCN1                 0.014   hydrogen voltage-gated channel 1 
PELP1                 0.014   proline, glutamic acid and leucine rich protein 1 [...
PABPC1                0.014   poly(A) binding protein, cytoplasmic 1 
SGK269                0.014   NKF3 kinase family member 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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