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Search of human proteins with 87044888
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|87044888 short stature homeobox 2 isoform b [Homo sapiens]
(190 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|87044888 short stature homeobox 2 isoform b [Homo sapiens] 377 e-105
gi|89145413 short stature homeobox 2 isoform a [Homo sapiens] 368 e-102
gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens] 317 5e-87
gi|6031203 short stature homeobox isoform SHOXb [Homo sapiens] 197 6e-51
gi|24497589 aristaless related homeobox [Homo sapiens] 108 2e-24
gi|122937484 dorsal root ganglia homeobox [Homo sapiens] 100 1e-21
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 95 4e-20
gi|7706659 paired related homeobox 2 [Homo sapiens] 95 4e-20
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 94 7e-20
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 94 7e-20
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 94 7e-20
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 94 7e-20
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 94 7e-20
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 94 7e-20
gi|46249382 paired-like homeobox 2a [Homo sapiens] 94 9e-20
gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens] 94 9e-20
gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo sapi... 94 9e-20
gi|4826912 paired-like homeodomain 3 [Homo sapiens] 93 1e-19
gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens] 93 1e-19
gi|14249388 retina and anterior neural fold homeobox 2 [Homo sap... 93 1e-19
gi|14149760 orthopedia homeobox [Homo sapiens] 93 1e-19
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 93 2e-19
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 93 2e-19
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 93 2e-19
gi|12707580 paired-like homeobox 2b [Homo sapiens] 92 2e-19
gi|55743092 aristaless-like homeobox 4 [Homo sapiens] 92 3e-19
gi|122937321 UNC homeobox [Homo sapiens] 92 3e-19
gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens] 91 8e-19
gi|27436933 orthodenticle homeobox 2 isoform b [Homo sapiens] 89 2e-18
gi|11119420 orthodenticle homeobox 2 isoform a [Homo sapiens] 89 2e-18
>gi|87044888 short stature homeobox 2 isoform b [Homo sapiens]
Length = 190
Score = 377 bits (967), Expect = e-105
Identities = 190/190 (100%), Positives = 190/190 (100%)
Query: 1 MEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQ 60
MEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQ
Sbjct: 1 MEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQ 60
Query: 61 NRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQVQAQLQLDSAVAHAH 120
NRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQVQAQLQLDSAVAHAH
Sbjct: 61 NRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQVQAQLQLDSAVAHAH 120
Query: 121 HHLHPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAAKTTSKNSSIADLRLK 180
HHLHPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAAKTTSKNSSIADLRLK
Sbjct: 121 HHLHPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAAKTTSKNSSIADLRLK 180
Query: 181 AKKHAAALGL 190
AKKHAAALGL
Sbjct: 181 AKKHAAALGL 190
>gi|89145413 short stature homeobox 2 isoform a [Homo sapiens]
Length = 331
Score = 368 bits (944), Expect = e-102
Identities = 190/202 (94%), Positives = 190/202 (94%), Gaps = 12/202 (5%)
Query: 1 MEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQ 60
MEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQ
Sbjct: 130 MEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQ 189
Query: 61 NRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQ------------QVQA 108
NRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQ QVQA
Sbjct: 190 NRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQDSHCNVTPLSFQVQA 249
Query: 109 QLQLDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAAKTT 168
QLQLDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAAKTT
Sbjct: 250 QLQLDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAAKTT 309
Query: 169 SKNSSIADLRLKAKKHAAALGL 190
SKNSSIADLRLKAKKHAAALGL
Sbjct: 310 SKNSSIADLRLKAKKHAAALGL 331
>gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens]
Length = 292
Score = 317 bits (811), Expect = 5e-87
Identities = 159/189 (84%), Positives = 177/189 (93%), Gaps = 4/189 (2%)
Query: 2 EDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQN 61
+++GQTK+KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQN
Sbjct: 108 DEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQN 167
Query: 62 RRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQVQAQLQLDSAVAHAHH 121
RRAKCRKQENQ+HKGV++G A+ +ACRVAPYVN+GALRMPFQQVQAQLQL+ VAHAH
Sbjct: 168 RRAKCRKQENQMHKGVILGTANHLDACRVAPYVNMGALRMPFQQVQAQLQLE-GVAHAHP 226
Query: 122 HLHPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAAKTTSKNSSIADLRLKA 181
HLHPHLAAHAPY+MFP PPFGLP+A+L A+SASAA+VV AAAAK+ SKNSSIADLRLKA
Sbjct: 227 HLHPHLAAHAPYLMFPPPPFGLPIASL-AESASAAAVV--AAAAKSNSKNSSIADLRLKA 283
Query: 182 KKHAAALGL 190
+KHA ALGL
Sbjct: 284 RKHAEALGL 292
>gi|6031203 short stature homeobox isoform SHOXb [Homo sapiens]
Length = 225
Score = 197 bits (500), Expect = 6e-51
Identities = 91/106 (85%), Positives = 103/106 (97%)
Query: 2 EDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQN 61
+++GQTK+KQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQN
Sbjct: 108 DEDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQN 167
Query: 62 RRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQVQ 107
RRAKCRKQENQ+HKGV++G A+ +ACRVAPYVN+GALRMPFQQ++
Sbjct: 168 RRAKCRKQENQMHKGVILGTANHLDACRVAPYVNMGALRMPFQQME 213
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 108 bits (271), Expect = 2e-24
Identities = 88/231 (38%), Positives = 107/231 (46%), Gaps = 49/231 (21%)
Query: 3 DEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNR 62
+EG K KQRR RT FT QL ELER F +THYPD F REEL+ RL L+EARVQVWFQNR
Sbjct: 320 EEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNR 379
Query: 63 RAKCRKQEN---QLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQVQAQLQLD-SAVAH 118
RAK RK+E Q H L ++PY++ PF L +A A
Sbjct: 380 RAKWRKREKAGAQTHPPGLPFPGPLSATHPLSPYLDAS----PFPPHHPALDSAWTAAAA 435
Query: 119 AHHHLHPHL-----------------------AAHAPYMMFPAPPFGLPLATL------- 148
A P L AA + F +P FG +T+
Sbjct: 436 AAAAAFPSLPPPPGSASLPPSGAPLGLSTFLGAAVFRHPAFISPAFGRLFSTMAPLTSAS 495
Query: 149 -----------AADSASAASVVAAAAAAKTTSKNSSIADLRLKAKKHAAAL 188
A + A A+ +A A A + SSIA LRLKAK+HAA L
Sbjct: 496 TAAALLRQPTPAVEGAVASGALADPATAAADRRASSIAALRLKAKEHAAQL 546
>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
Length = 268
Score = 100 bits (248), Expect = 1e-21
Identities = 70/199 (35%), Positives = 99/199 (49%), Gaps = 16/199 (8%)
Query: 3 DEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNR 62
D+G + KQRR+RT FTL+QL LE +F +THYPD F REEL+ ++ L+EARVQVWFQNR
Sbjct: 30 DDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNR 89
Query: 63 RAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGA------LRMPFQQVQAQLQLDSAV 116
RAK RK E GA P N+ + R + ++AQ L V
Sbjct: 90 RAKWRKTERGA-SDQEPGAKEPMAEVTPPPVRNINSPPPGDQARSKKEALEAQQSLGRTV 148
Query: 117 AHAHHHLHPHL-------AAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAAKTTS 169
A L A +A + A G PL + S + ++
Sbjct: 149 GPAGPFFPSCLPGTLLNTATYAQALSHVASLKGGPLCSCCVPDPMGLSFLPTYGC--QSN 206
Query: 170 KNSSIADLRLKAKKHAAAL 188
+ +S+A LR+KA++H+ A+
Sbjct: 207 RTASVATLRMKAREHSEAV 225
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 94.7 bits (234), Expect = 4e-20
Identities = 71/215 (33%), Positives = 94/215 (43%), Gaps = 26/215 (12%)
Query: 1 MEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQ 60
+ +E Q K K RR+RT FT QL+ELER F+++HYPD + REEL+ ++ L E RVQVWFQ
Sbjct: 126 LSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQ 185
Query: 61 NRRAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGAL--------------------- 99
NRRAK R+QE + + + R P + L
Sbjct: 186 NRRAKWRRQEKLEVSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGGPAGGALPLESWL 245
Query: 100 --RMPFQQVQAQLQLDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPLATLAADSAS--- 154
+P A L A + P +PP G L LA S
Sbjct: 246 GPPLPGGGATALQSLPGFGPPAQSLPASYTPPPPPPPFLNSPPLGPGLQPLAPPPPSYPC 305
Query: 155 AASVVAAAAAAKTTSKNSSIADLRLKAKKHAAALG 189
+ +NSSIA LRLKAK+H A+G
Sbjct: 306 GPGFGDKFPLDEADPRNSSIAALRLKAKEHIQAIG 340
>gi|7706659 paired related homeobox 2 [Homo sapiens]
Length = 253
Score = 94.7 bits (234), Expect = 4e-20
Identities = 66/176 (37%), Positives = 86/176 (48%), Gaps = 35/176 (19%)
Query: 8 KIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCR 67
K KQRR+RT F QL LER+F+ THYPDAF+REEL++R+ LSEARVQVWFQNRRAK R
Sbjct: 101 KKKQRRNRTTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFR 160
Query: 68 KQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQVQAQLQLDSAVAHAHHHLHPHL 127
+ E + + A + Y A+ P L D +
Sbjct: 161 RNERAM--------LASRSASLLKSYSQEAAIEQPVAPRPTALSPD----------YLSW 202
Query: 128 AAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAAKTTSKNSSIADLRLKAKK 183
A +PY PP+ S ++ A + +SIA LRLKAK+
Sbjct: 203 TASSPYS--TVPPY---------------SPGSSGPATPGVNMANSIASLRLKAKE 241
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 94.0 bits (232), Expect = 7e-20
Identities = 48/68 (70%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 8 KIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCR 67
K KQRRSRT FT EQL ELER F+ THYPD + REEL+QR L+EARVQVWF NRRA+ R
Sbjct: 215 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 274
Query: 68 KQ--ENQL 73
KQ NQL
Sbjct: 275 KQAGANQL 282
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 94.0 bits (232), Expect = 7e-20
Identities = 48/68 (70%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 8 KIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCR 67
K KQRRSRT FT EQL ELER F+ THYPD + REEL+QR L+EARVQVWF NRRA+ R
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275
Query: 68 KQ--ENQL 73
KQ NQL
Sbjct: 276 KQAGANQL 283
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 94.0 bits (232), Expect = 7e-20
Identities = 48/68 (70%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 8 KIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCR 67
K KQRRSRT FT EQL ELER F+ THYPD + REEL+QR L+EARVQVWF NRRA+ R
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275
Query: 68 KQ--ENQL 73
KQ NQL
Sbjct: 276 KQAGANQL 283
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 94.0 bits (232), Expect = 7e-20
Identities = 48/68 (70%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 8 KIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCR 67
K KQRRSRT FT EQL ELER F+ THYPD + REEL+QR L+EARVQVWF NRRA+ R
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275
Query: 68 KQ--ENQL 73
KQ NQL
Sbjct: 276 KQAGANQL 283
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 94.0 bits (232), Expect = 7e-20
Identities = 48/68 (70%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 8 KIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCR 67
K KQRRSRT FT EQL ELER F+ THYPD + REEL+QR L+EARVQVWF NRRA+ R
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275
Query: 68 KQ--ENQL 73
KQ NQL
Sbjct: 276 KQAGANQL 283
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 94.0 bits (232), Expect = 7e-20
Identities = 48/68 (70%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 8 KIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCR 67
K KQRRSRT FT EQL ELER F+ THYPD + REEL+QR L+EARVQVWF NRRA+ R
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275
Query: 68 KQ--ENQL 73
KQ NQL
Sbjct: 276 KQAGANQL 283
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 93.6 bits (231), Expect = 9e-20
Identities = 48/75 (64%), Positives = 54/75 (72%)
Query: 8 KIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCR 67
K KQRR RT FT QL ELER+F ETHYPD + REEL+ ++ L+EARVQVWFQNRRAK R
Sbjct: 87 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 146
Query: 68 KQENQLHKGVLIGAA 82
KQE GAA
Sbjct: 147 KQERAASAKGAAGAA 161
>gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]
Length = 217
Score = 93.6 bits (231), Expect = 9e-20
Identities = 43/73 (58%), Positives = 56/73 (76%)
Query: 1 MEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQ 60
+ E + K KQRR+RT F QL LER+F+ THYPDAF+RE+L++R+ L+EARVQVWFQ
Sbjct: 84 LNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQ 143
Query: 61 NRRAKCRKQENQL 73
NRRAK R+ E +
Sbjct: 144 NRRAKFRRNERAM 156
>gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo
sapiens]
Length = 245
Score = 93.6 bits (231), Expect = 9e-20
Identities = 43/73 (58%), Positives = 56/73 (76%)
Query: 1 MEDEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQ 60
+ E + K KQRR+RT F QL LER+F+ THYPDAF+RE+L++R+ L+EARVQVWFQ
Sbjct: 84 LNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQ 143
Query: 61 NRRAKCRKQENQL 73
NRRAK R+ E +
Sbjct: 144 NRRAKFRRNERAM 156
>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
Length = 302
Score = 93.2 bits (230), Expect = 1e-19
Identities = 78/236 (33%), Positives = 104/236 (44%), Gaps = 65/236 (27%)
Query: 3 DEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNR 62
++G K KQRR RT+FT +QL ELE F YPD REE++ L+EARV+VWF+NR
Sbjct: 54 EDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNR 113
Query: 63 RAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQVQAQLQLDSAVAHAHHH 122
RAK RK+E + Q E C+ + +G L P+++V + A
Sbjct: 114 RAKWRKRER----------SQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKA--- 160
Query: 123 LHPHLAAH--------------APYMMFPAP----------------------------- 139
L P LAA A +F P
Sbjct: 161 LAPPLAAKTFPFAFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPGPGALQGLGG 220
Query: 140 -PFGLPLATLAADSASAASVVAAAAAAKTTSK--------NSSIADLRLKAKKHAA 186
P GL A +++ + S AAAAAA S NSS+A LRLKAK+HA+
Sbjct: 221 GPPGLAPAAVSSGAVSCPYASAAAAAAAAASSPYVYRDPCNSSLASLRLKAKQHAS 276
>gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]
Length = 325
Score = 93.2 bits (230), Expect = 1e-19
Identities = 74/224 (33%), Positives = 104/224 (46%), Gaps = 41/224 (18%)
Query: 6 QTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAK 65
Q + KQ+R RT FT QLNELER F +THYPD FMREEL+ R+GL+E+RVQVWFQNRRAK
Sbjct: 99 QGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAK 158
Query: 66 CRKQENQLH----KGVLIGAAS--QFEACRVAPYVNVG--------------ALRMP-FQ 104
+K++ + G L+ QF + A +G A MP
Sbjct: 159 WKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPGVS 218
Query: 105 QVQAQLQLDSAVAHAHHHLHPHLAAHAP--------------------YMMFPAPPFGLP 144
Q+ L A A LAA P ++ PA P +P
Sbjct: 219 QLPLPPALGRQQAMAQSLSQCSLAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVP 278
Query: 145 LATLAADSASAASVVAAAAAAKTTSKNSSIADLRLKAKKHAAAL 188
+ + S + + ++ + + +SIA LR KA +H ++
Sbjct: 279 ASLPGPSNVSGSPQLCSSPDSSDVWRGTSIASLRRKALEHTVSM 322
>gi|14249388 retina and anterior neural fold homeobox 2 [Homo
sapiens]
Length = 184
Score = 93.2 bits (230), Expect = 1e-19
Identities = 68/187 (36%), Positives = 88/187 (47%), Gaps = 31/187 (16%)
Query: 4 EGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRR 63
E K K RR+RT FT QL++LER F+ +HYPD + REEL+ ++ L E RVQVWFQNRR
Sbjct: 20 EEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRR 79
Query: 64 AKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQVQAQLQLDSAVAHAHHHL 123
AK R+QE +L G AA + P+ A+ +P L
Sbjct: 80 AKWRRQE-RLESGSGAVAAPRLPEAPALPFARPPAMSLP--------------------L 118
Query: 124 HPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAAKTTSKNSSI--ADLRLKA 181
P L P PP L L + A A T + ++ A LRL A
Sbjct: 119 EPWLG--------PGPPAVPGLPRLLGPGPGLQASFGPHAFAPTFADGFALEEASLRLLA 170
Query: 182 KKHAAAL 188
K+HA AL
Sbjct: 171 KEHAQAL 177
>gi|14149760 orthopedia homeobox [Homo sapiens]
Length = 325
Score = 93.2 bits (230), Expect = 1e-19
Identities = 74/224 (33%), Positives = 104/224 (46%), Gaps = 41/224 (18%)
Query: 6 QTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAK 65
Q + KQ+R RT FT QLNELER F +THYPD FMREEL+ R+GL+E+RVQVWFQNRRAK
Sbjct: 99 QGQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAK 158
Query: 66 CRKQENQLH----KGVLIGAAS--QFEACRVAPYVNVG--------------ALRMP-FQ 104
+K++ + G L+ QF + A +G A MP
Sbjct: 159 WKKRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAAMPGVS 218
Query: 105 QVQAQLQLDSAVAHAHHHLHPHLAAHAP--------------------YMMFPAPPFGLP 144
Q+ L A A LAA P ++ PA P +P
Sbjct: 219 QLPLPPALGRQQAMAQSLSQCSLAAGPPPNSMGLSNSLAGSNGAGLQSHLYQPAFPGMVP 278
Query: 145 LATLAADSASAASVVAAAAAAKTTSKNSSIADLRLKAKKHAAAL 188
+ + S + + ++ + + +SIA LR KA +H ++
Sbjct: 279 ASLPGPSNVSGSPQLCSSPDSSDVWRGTSIASLRRKALEHTVSM 322
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 92.8 bits (229), Expect = 2e-19
Identities = 47/68 (69%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 8 KIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCR 67
K KQRRSRT FT EQL ELE+ F+ THYPD + REEL+QR L+EARVQVWF NRRA+ R
Sbjct: 214 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWR 273
Query: 68 KQ--ENQL 73
KQ NQL
Sbjct: 274 KQAGANQL 281
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 92.8 bits (229), Expect = 2e-19
Identities = 47/68 (69%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 8 KIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCR 67
K KQRRSRT FT EQL ELE+ F+ THYPD + REEL+QR L+EARVQVWF NRRA+ R
Sbjct: 212 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWR 271
Query: 68 KQ--ENQL 73
KQ NQL
Sbjct: 272 KQAGANQL 279
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 92.8 bits (229), Expect = 2e-19
Identities = 47/68 (69%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 8 KIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCR 67
K KQRRSRT FT EQL ELE+ F+ THYPD + REEL+QR L+EARVQVWF NRRA+ R
Sbjct: 214 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWR 273
Query: 68 KQ--ENQL 73
KQ NQL
Sbjct: 274 KQAGANQL 281
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 92.4 bits (228), Expect = 2e-19
Identities = 45/63 (71%), Positives = 51/63 (80%)
Query: 8 KIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCR 67
K KQRR RT FT QL ELER+F ETHYPD + REEL+ ++ L+EARVQVWFQNRRAK R
Sbjct: 95 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154
Query: 68 KQE 70
KQE
Sbjct: 155 KQE 157
>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
Length = 411
Score = 92.0 bits (227), Expect = 3e-19
Identities = 68/208 (32%), Positives = 98/208 (47%), Gaps = 28/208 (13%)
Query: 3 DEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNR 62
D K K+RR+RT FT QL ELE++F +THYPD + RE+L+ R L+EARVQVWFQNR
Sbjct: 206 DSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNR 265
Query: 63 RAKCRKQE------------NQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQVQAQL 110
RAK RK+E + ++ L+ A + + ++ P +
Sbjct: 266 RAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQIQNPSWLGNNGAASPVP--ACVV 323
Query: 111 QLDSAVAHAHHHLHPHLAAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAA----- 165
D A H HP + + F + A S+ AA+ +
Sbjct: 324 PCDPVPACMSPHAHPPGSGASSVTDF----LSVSGAGSHVGQTHMGSLFGAASLSPGLNG 379
Query: 166 -----KTTSKNSSIADLRLKAKKHAAAL 188
+ K SSIA LR+KAK+H+AA+
Sbjct: 380 YELNGEPDRKTSSIAALRMKAKEHSAAI 407
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 92.0 bits (227), Expect = 3e-19
Identities = 45/69 (65%), Positives = 54/69 (78%)
Query: 3 DEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNR 62
D+ K+RR+RTNFT QL ELE+ F+E+HYPD FMRE L+ RL L E+RVQVWFQNR
Sbjct: 97 DKESPGCKRRRTRTNFTGWQLEELEKAFNESHYPDVFMREALALRLDLVESRVQVWFQNR 156
Query: 63 RAKCRKQEN 71
RAK RK+EN
Sbjct: 157 RAKWRKKEN 165
>gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]
Length = 326
Score = 90.5 bits (223), Expect = 8e-19
Identities = 72/203 (35%), Positives = 97/203 (47%), Gaps = 25/203 (12%)
Query: 3 DEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNR 62
D + K+RR RT FT QL ELE++F +THYPD ++RE+L+ R L+EARVQVWFQNR
Sbjct: 124 DSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNR 183
Query: 63 RAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGALRMPFQQVQAQLQLDSA----VAH 118
RAK RK+E G + A S F A ++V + Q+Q L +A V
Sbjct: 184 RAKWRKRERY---GQIQQAKSHFAA---TYDISVLPRTDSYPQIQNNLWAGNASGGSVVT 237
Query: 119 AHHHLHPHLAAHAPYMMFPAPPFG-------------LPLATLAADSASAASVVAAAAAA 165
+ + PY P +PL DS + A
Sbjct: 238 SCMLPRDTSSCMTPYSHSPRTDSSYTGFSNHQNQFSHVPLNNFFTDSLLTGATNGHAFET 297
Query: 166 KT--TSKNSSIADLRLKAKKHAA 186
K ++SSIA LR+KAK+H A
Sbjct: 298 KPEFERRSSSIAVLRMKAKEHTA 320
>gi|27436933 orthodenticle homeobox 2 isoform b [Homo sapiens]
Length = 289
Score = 89.0 bits (219), Expect = 2e-18
Identities = 42/70 (60%), Positives = 52/70 (74%)
Query: 7 TKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKC 66
T KQRR RT FT QL+ LE LF +T YPD FMREE++ ++ L E+RVQVWF+NRRAKC
Sbjct: 34 TPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKC 93
Query: 67 RKQENQLHKG 76
R+Q+ Q G
Sbjct: 94 RQQQQQQQNG 103
>gi|11119420 orthodenticle homeobox 2 isoform a [Homo sapiens]
Length = 297
Score = 89.0 bits (219), Expect = 2e-18
Identities = 42/70 (60%), Positives = 52/70 (74%)
Query: 7 TKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKC 66
T KQRR RT FT QL+ LE LF +T YPD FMREE++ ++ L E+RVQVWF+NRRAKC
Sbjct: 42 TPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKC 101
Query: 67 RKQENQLHKG 76
R+Q+ Q G
Sbjct: 102 RQQQQQQQNG 111
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.128 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,364,626
Number of Sequences: 37866
Number of extensions: 240659
Number of successful extensions: 2392
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 1694
Number of HSP's gapped (non-prelim): 665
length of query: 190
length of database: 18,247,518
effective HSP length: 96
effective length of query: 94
effective length of database: 14,612,382
effective search space: 1373563908
effective search space used: 1373563908
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.