Guide to the Human Genome
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Search of human proteins with 86991440

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|86991440 splicing factor, arginine/serine-rich 5 [Homo
sapiens]
         (272 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|86991440 splicing factor, arginine/serine-rich 5 [Homo sapiens]    531   e-151
gi|86991438 splicing factor, arginine/serine-rich 5 [Homo sapiens]    531   e-151
gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]     307   7e-84
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]    297   6e-81
gi|5902076 splicing factor, arginine/serine-rich 1 isoform 1 [Ho...   168   4e-42
gi|118582269 splicing factor, arginine/serine-rich 1 isoform 2 [...   133   2e-31
gi|4506903 splicing factor, arginine/serine-rich 9 [Homo sapiens]     122   3e-28
gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]    112   3e-25
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]     94   1e-19
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]    92   5e-19
gi|16905517 FUS interacting protein (serine-arginine rich) 1 iso...    89   4e-18
gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens]      86   3e-17
gi|148612890 serine-arginine repressor protein [Homo sapiens]          85   6e-17
gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapi...    80   2e-15
gi|119226260 calcium homeostasis endoplasmic reticulum protein [...    79   4e-15
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]           76   3e-14
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]           76   3e-14
gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo s...    76   4e-14
gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo s...    76   4e-14
gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain ...    75   8e-14
gi|50962882 G patch domain containing 8 [Homo sapiens]                 74   1e-13
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]     74   1e-13
gi|187960109 RNA binding motif protein 28 [Homo sapiens]               71   1e-12
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]          70   3e-12
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ...    69   3e-12
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [...    69   3e-12
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi...    69   4e-12
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]    68   7e-12
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]     67   1e-11
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]       67   2e-11

>gi|86991440 splicing factor, arginine/serine-rich 5 [Homo sapiens]
          Length = 272

 Score =  531 bits (1367), Expect = e-151
 Identities = 272/272 (100%), Positives = 272/272 (100%)

Query: 1   MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK 60
           MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
Sbjct: 1   MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK 60

Query: 61  ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS 120
           ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS
Sbjct: 61  ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS 120

Query: 121 WQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGS 180
           WQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGS
Sbjct: 121 WQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGS 180

Query: 181 KRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQ 240
           KRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQ
Sbjct: 181 KRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQ 240

Query: 241 KRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN 272
           KRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
Sbjct: 241 KRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN 272


>gi|86991438 splicing factor, arginine/serine-rich 5 [Homo sapiens]
          Length = 272

 Score =  531 bits (1367), Expect = e-151
 Identities = 272/272 (100%), Positives = 272/272 (100%)

Query: 1   MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK 60
           MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK
Sbjct: 1   MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK 60

Query: 61  ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS 120
           ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS
Sbjct: 61  ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVS 120

Query: 121 WQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGS 180
           WQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGS
Sbjct: 121 WQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGS 180

Query: 181 KRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQ 240
           KRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQ
Sbjct: 181 KRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQ 240

Query: 241 KRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN 272
           KRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN
Sbjct: 241 KRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN 272


>gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]
          Length = 344

 Score =  307 bits (786), Expect = 7e-84
 Identities = 170/279 (60%), Positives = 200/279 (71%), Gaps = 17/279 (6%)

Query: 5   RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
           RV+IGRL+   REKD++RFF GYGR+ ++DLK G+GFVEFED RDADDAVYEL+GKELC 
Sbjct: 3   RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62

Query: 65  ERVTIEHARA--RSRGGRGRGRYSDR--FSSRRPRNDRRNAPPVRTENRLIVENLSSRVS 120
           ERV +EHAR   R R G   G  S    +SSRR     +  PPVRTE RLIVENLSSR S
Sbjct: 63  ERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSRCS 122

Query: 121 WQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE-- 178
           WQDLKDFMRQAGEVT+ADAH+ + NEGV+EF SY D+K A++KL G EINGR I+LIE  
Sbjct: 123 WQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIEDK 182

Query: 179 ----------GSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSR 228
                     GS+  SRSR RSRSR+R SSRSRSRS S+SR S SRSRS+ RSRSRSK R
Sbjct: 183 PRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSR-SRSRSRSKGRSRSRSKGR 241

Query: 229 SVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRS 267
                   +    RGS S S+S +  + ++SRSRSRSRS
Sbjct: 242 KSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSRS 280



 Score = 65.5 bits (158), Expect = 5e-11
 Identities = 71/251 (28%), Positives = 111/251 (44%), Gaps = 41/251 (16%)

Query: 5   RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDGKE 61
           R+ +  L+     +D++ F +  G +   D  +     G +EF    D   A+ +LDG E
Sbjct: 111 RLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTE 170

Query: 62  LCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSW 121
           +    + +   + R+   R       R  SRR R+  R+    R+ +R I ++ S   S 
Sbjct: 171 INGRNIRLIEDKPRTSHRRSYSGSRSRSRSRR-RSRSRSRRSSRSRSRSISKSRSRSRSR 229

Query: 122 QDLKDFMRQAGEVTFADAH-RPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGS 180
              +   R  G  + + +  +PK + G                 S      R     E S
Sbjct: 230 SKGRSRSRSKGRKSRSKSKSKPKSDRG-----------------SHSHSRSRSKDEYEKS 272

Query: 181 KRHSRSRS---------RSRSRTRSSSRSRS-----RSRSRS-----RKSYSRSRSRSRS 221
           +  SRSRS         +S+SR+RS SRS S      S++RS     +++ SRSRSRSRS
Sbjct: 273 RSRSRSRSPKENGKGDIKSKSRSRSQSRSNSPLPVPPSKARSVSPPPKRATSRSRSRSRS 332

Query: 222 RSRSKSRSVSR 232
           +SRS+SRS SR
Sbjct: 333 KSRSRSRSSSR 343


>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
          Length = 494

 Score =  297 bits (761), Expect = 6e-81
 Identities = 168/276 (60%), Positives = 202/276 (73%), Gaps = 18/276 (6%)

Query: 5   RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCS 64
           RV+IGRL+  ARE+DVERFFKGYG+I ++DLK G+GFVEF+D RDADDAVYEL+GK+LC 
Sbjct: 3   RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62

Query: 65  ERVTIEHARARSRGGR---GRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSW 121
           ERV +EHAR   R G    GR  Y  R S R      +  PP RTE RLIVENLSSR SW
Sbjct: 63  ERVIVEHARGPRRDGSYGSGRSGYGYRRSGRD-----KYGPPTRTEYRLIVENLSSRCSW 117

Query: 122 QDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE--- 178
           QDLKD+MRQAGEVT+ADAH+ + NEGV+EF SY D+K A+EKL G E+NGRKI+L+E   
Sbjct: 118 QDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVEDKP 177

Query: 179 GSKR-----HSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRS 233
           GS+R      SRS SRSRSR+R S +SRSRS S S+ S+S+SRSRSRS SRS+S+S SRS
Sbjct: 178 GSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGS-SKSSHSKSRSRSRSGSRSRSKSRSRS 236

Query: 234 PVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVD 269
               +S+K  S S SK   S  R  S  +SRS+S D
Sbjct: 237 QSRSRSKKEKSRSPSKE-KSRSRSHSAGKSRSKSKD 271



 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 75/280 (26%), Positives = 118/280 (42%), Gaps = 47/280 (16%)

Query: 5   RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGF---GFVEFEDPRDADDAVYELDGKE 61
           R+ +  L+     +D++ + +  G +   D  +G    G +EF    D   A+ +LDG E
Sbjct: 105 RLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTE 164

Query: 62  LCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSW 121
           +   ++ +   +    G R R  YS   S  R R+  R++   R+ +       SS+ S 
Sbjct: 165 VNGRKIRLVEDKP---GSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSG------SSKSSH 215

Query: 122 QDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSK 181
              +   R           R                       S      +K K    SK
Sbjct: 216 SKSRSRSRSGSRSRSKSRSR-----------------------SQSRSRSKKEKSRSPSK 252

Query: 182 RHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPE-KSQ 240
             SRSRS S  ++RS S+ ++  + ++  +  + +SRS SR +SKS+S SRS     + +
Sbjct: 253 EKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQERRVEEE 312

Query: 241 KRGSSSRSKSPASVDRQ-----------RSRSRSRSRSVD 269
           KRGS SR +S     RQ           RSRSRSRS+S D
Sbjct: 313 KRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKD 352



 Score = 61.6 bits (148), Expect = 7e-10
 Identities = 72/244 (29%), Positives = 102/244 (41%), Gaps = 48/244 (19%)

Query: 70  EHARARSRG-GRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFM 128
           E +R+RS   G+ R +  D+   +   ND    P  R+ +R   ++  SR   Q+ +   
Sbjct: 253 EKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKS-KSRSRSQERRVEE 311

Query: 129 RQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEIN--GRKIKLIEGSKRHSRS 186
            + G V+   +    L +      S G  ++     S  +    GRK +  E S+  SRS
Sbjct: 312 EKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRK-RSREESRSRSRS 370

Query: 187 RSRS-RSRTRSSSRSRSRSRSRSRKSYSRSRSRSRS------------------------ 221
           RS+S RSR R S R      S+ +K     RS+SRS                        
Sbjct: 371 RSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAKSESSQREGRGE 430

Query: 222 ----------RSRSKSRSVSRSPVPEKSQKRGSS-----SRSKS---PASVDRQRSRSRS 263
                     RSRS+S S S+  +P +S+ R  S     SRSKS    AS    RSRSRS
Sbjct: 431 SENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSRS 490

Query: 264 RSRS 267
            SRS
Sbjct: 491 HSRS 494


>gi|5902076 splicing factor, arginine/serine-rich 1 isoform 1 [Homo
           sapiens]
          Length = 248

 Score =  168 bits (426), Expect = 4e-42
 Identities = 111/243 (45%), Positives = 138/243 (56%), Gaps = 27/243 (11%)

Query: 4   CRVFIGRLNPAAREKDVERFFKGYGRIRDIDLK--RG---FGFVEFEDPRDADDAVYELD 58
           CR+++G L P  R KD+E  F  YG IRDIDLK  RG   F FVEFEDPRDA+DAVY  D
Sbjct: 16  CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD 75

Query: 59  GKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSR 118
           G +    R+ +E  R+    GRG GR             R   P  R+ENR++V  L   
Sbjct: 76  GYDYDGYRLRVEFPRS----GRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPS 131

Query: 119 VSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGR------ 172
            SWQDLKD MR+AG+V +AD +R     GVVEF    D+  A+ KL   +          
Sbjct: 132 GSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 189

Query: 173 -KIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSR-----SRSK 226
            ++K ++G +  S  RSRSRSR+RS SRSRS SRSR   SYS  RSR   R     SRS+
Sbjct: 190 IRVK-VDGPRSPSYGRSRSRSRSRSRSRSRSNSRSR---SYSPRRSRGSPRYSPRHSRSR 245

Query: 227 SRS 229
           SR+
Sbjct: 246 SRT 248


>gi|118582269 splicing factor, arginine/serine-rich 1 isoform 2
           [Homo sapiens]
          Length = 201

 Score =  133 bits (334), Expect = 2e-31
 Identities = 78/176 (44%), Positives = 99/176 (56%), Gaps = 11/176 (6%)

Query: 4   CRVFIGRLNPAAREKDVERFFKGYGRIRDIDLK--RG---FGFVEFEDPRDADDAVYELD 58
           CR+++G L P  R KD+E  F  YG IRDIDLK  RG   F FVEFEDPRDA+DAVY  D
Sbjct: 16  CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD 75

Query: 59  GKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSR 118
           G +    R+ +E  R+    GRG GR             R   P  R+ENR++V  L   
Sbjct: 76  GYDYDGYRLRVEFPRS----GRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPS 131

Query: 119 VSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKI 174
            SWQDLKD MR+AG+V +AD +R     GVVEF    D+  A+ KL   +    ++
Sbjct: 132 GSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEV 185


>gi|4506903 splicing factor, arginine/serine-rich 9 [Homo sapiens]
          Length = 221

 Score =  122 bits (306), Expect = 3e-28
 Identities = 84/217 (38%), Positives = 116/217 (53%), Gaps = 27/217 (12%)

Query: 5   RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRG-----FGFVEFEDPRDADDAVYELDG 59
           R+++G L    REKD+E  F  YGRIR+I+LK       F FV FEDPRDA+DA+Y  +G
Sbjct: 15  RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 74

Query: 60  KELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRV 119
            +    R+ +E  R  + GGRG            PR  R   P  R++ R++V  L    
Sbjct: 75  YDYGQCRLRVEFPR--TYGGRGGW----------PRGGRNGPPTRRSDFRVLVSGLPPSG 122

Query: 120 SWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEG 179
           SWQDLKD MR+AG+V +AD  +  +  G+VE+    D++ A+ KL     +  K +  EG
Sbjct: 123 SWQDLKDHMREAGDVCYADVQKDGV--GMVEYLRKEDMEYALRKL-----DDTKFRSHEG 175

Query: 180 SKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSR 216
              + R       R+ S   SRSRS SR R S  +SR
Sbjct: 176 ETSYIRVYP---ERSTSYGYSRSRSGSRGRDSPYQSR 209


>gi|72534660 splicing factor, arginine/serine-rich 7 [Homo sapiens]
          Length = 238

 Score =  112 bits (281), Expect = 3e-25
 Identities = 96/261 (36%), Positives = 122/261 (46%), Gaps = 44/261 (16%)

Query: 5   RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDGKE 61
           +V++G L   A + ++ER F  YG +R + + R   GF FVEFEDPRDA+DAV  LDGK 
Sbjct: 12  KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKV 71

Query: 62  LCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSW 121
           +C  RV +E                   S+  PR  R + PP R                
Sbjct: 72  ICGSRVRVE------------------LSTGMPRRSRFDRPPARRP-------------- 99

Query: 122 QDLKDFMRQAGEVTF--ADAHR-PKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE 178
            D  D   + GE      D HR  +         S+   +      S     GR+ +   
Sbjct: 100 FDPNDRCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRRSR--S 157

Query: 179 GSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSK---SRSVSRSPV 235
            S R SRS S  RSR+ S  RSRS S   SR   S SRSRSRSRS S+   SRS SRSP 
Sbjct: 158 ASPRRSRSISLRRSRSASLRRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPS 217

Query: 236 PEKSQK-RGSSSRSKSPASVD 255
           P++S+   GS  RS SP  +D
Sbjct: 218 PKRSRSPSGSPRRSASPERMD 238



 Score = 65.9 bits (159), Expect = 4e-11
 Identities = 66/196 (33%), Positives = 84/196 (42%), Gaps = 36/196 (18%)

Query: 107 ENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSG 166
           E ++ V NL +     +L+      G +      R       VEF    D ++A+  L G
Sbjct: 10  ETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDG 69

Query: 167 KEINGRKIK--LIEGSKRHSR---------------------------SRSRSRSRTRSS 197
           K I G +++  L  G  R SR                              R   R RS 
Sbjct: 70  KVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDCHRYSRRRRSR 129

Query: 198 SRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQ 257
           SRSRS SRSR R+ YSRSRSRSR R RS+S S  RS      + R +S R     S+   
Sbjct: 130 SRSRSHSRSRGRR-YSRSRSRSRGR-RSRSASPRRSRSISLRRSRSASLRRSRSGSIKGS 187

Query: 258 R-----SRSRSRSRSV 268
           R     SRSRSRSRS+
Sbjct: 188 RYFQSPSRSRSRSRSI 203


>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
          Length = 221

 Score = 94.4 bits (233), Expect = 1e-19
 Identities = 76/204 (37%), Positives = 103/204 (50%), Gaps = 35/204 (17%)

Query: 99  RNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNE-----GVVEFAS 153
           R  P V     L V+NL+ R S   L+    + G V      R +  +       V F  
Sbjct: 5   RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64

Query: 154 YGDLKNAIEKLSGKEINGRKIKLIEG------SKRHSRS--------------RSRS-RS 192
             D ++A++ + G  ++GR++++            HSR               RSRS R 
Sbjct: 65  KRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGYGRRSRSPRR 124

Query: 193 RTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQ---------KRG 243
           R RS SRSRSRSRSRSR  YSRS+SRSR+RSRS+S S SRS    KS+         +  
Sbjct: 125 RRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSR 184

Query: 244 SSSRSKSPASVDRQRSRSRSRSRS 267
           S SRS+SP  V ++ S+SRSRS+S
Sbjct: 185 SRSRSRSPPPVSKRESKSRSRSKS 208



 Score = 72.8 bits (177), Expect = 3e-13
 Identities = 75/238 (31%), Positives = 102/238 (42%), Gaps = 58/238 (24%)

Query: 20  VERFFKGYGRIRDIDL--------KRGFGFVEFEDPRDADDAVYELDGKELCSERVTIEH 71
           + R F+ YGR+ D+ +         RGF FV F D RDA+DA+  +DG  L    + ++ 
Sbjct: 30  LRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 89

Query: 72  ARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQA 131
           AR         GR  D   SRR        PP R                       R  
Sbjct: 90  ARY--------GRPPDSHHSRR-------GPPPR-----------------------RYG 111

Query: 132 GEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSR 191
           G      +  P+         S    ++     S    +  K +    S+  S S+SRS 
Sbjct: 112 GGGYGRRSRSPRRRR-----RSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSA 166

Query: 192 SRTRSSSRSRSRSRSRSRKSYSRSRSRSR---SRSRSKSRSVSRSPVPEKSQKRGSSS 246
            R++S S S SRSRSRSR   SRSRSRS    S+  SKSRS S+SP P+  ++ G+ S
Sbjct: 167 RRSKSKSSSVSRSRSRSR---SRSRSRSPPPVSKRESKSRSRSKSP-PKSPEEEGAVS 220


>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
          Length = 282

 Score = 92.0 bits (227), Expect = 5e-19
 Identities = 83/259 (32%), Positives = 117/259 (45%), Gaps = 21/259 (8%)

Query: 20  VERFFKGYGRIRDIDLKR--------GFGFVEFEDPRDADDAVYELDGKELCSERVTIEH 71
           + R F+ YGR+ D+ + R        GF FV F D RDA DA   +DG EL    + ++ 
Sbjct: 30  LRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89

Query: 72  AR------ARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLK 125
           AR       RSR G  RGR       RR R+  R +   R  +R    + S   S    +
Sbjct: 90  ARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSRSPRRRHR----SRSRGPSCSRSR 145

Query: 126 DFMRQAGE-VTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHS 184
              R  G   + +   R   +      + Y   +    +  G   +         S+ HS
Sbjct: 146 SRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHS 205

Query: 185 RSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGS 244
            SRS S+S + +SSRS S S+S S +  S+S S SRSRSRS+S S++RSP     +K  S
Sbjct: 206 -SRSHSKSGSSTSSRSASTSKSSSARR-SKSSSVSRSRSRSRSSSMTRSPPRVSKRKSKS 263

Query: 245 SSRSKSPASVDRQRSRSRS 263
            SRSK P     +  +  S
Sbjct: 264 RSRSKRPPKSPEEEGQMSS 282



 Score = 58.2 bits (139), Expect = 8e-09
 Identities = 75/246 (30%), Positives = 95/246 (38%), Gaps = 81/246 (32%)

Query: 99  RNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNE-------GVVEF 151
           R  P V     L V+NL+ R S   L+    + G V   D + P+            V F
Sbjct: 5   RPPPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRV--GDVYIPREPHTKAPRGFAFVRF 62

Query: 152 ASYGDLKNAIEKLSGKEINGRKIKLIE-----------------------GSKRHSRS-- 186
               D ++A   + G E++GR++++                         G  R SRS  
Sbjct: 63  HDRRDAQDAEAAMDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYG 122

Query: 187 --------RSRSRSRTRSSSRSRSRSRSR---------SRKSYSRSR------SRSRSR- 222
                   R RSRSR  S SRSRSRSR R         SR  YSRSR      SRSR R 
Sbjct: 123 RRSRSPRRRHRSRSRGPSCSRSRSRSRYRGSRYSRSPYSRSPYSRSRYSRSPYSRSRYRE 182

Query: 223 -----------------------SRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRS 259
                                  SRS S+S S +     S  + SS+R    +SV R RS
Sbjct: 183 SRYGGSHYSSSGYSNSRYSRYHSSRSHSKSGSSTSSRSASTSKSSSARRSKSSSVSRSRS 242

Query: 260 RSRSRS 265
           RSRS S
Sbjct: 243 RSRSSS 248


>gi|16905517 FUS interacting protein (serine-arginine rich) 1
           isoform 2 [Homo sapiens]
          Length = 262

 Score = 89.0 bits (219), Expect = 4e-18
 Identities = 78/282 (27%), Positives = 129/282 (45%), Gaps = 64/282 (22%)

Query: 6   VFIGRLNPAAREKDVERFFKGYGRIRDIDLK--------RGFGFVEFEDPRDADDAVYEL 57
           +F+  +    R +D+ R F  YG I D+ +         RGF +V+FED RDA+DA++ L
Sbjct: 12  LFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNL 71

Query: 58  DGKELCSERVTIEHARA------RSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLI 111
           D K +C  ++ I+ A+       + +   GR  YS   SSR    DR      R+  R  
Sbjct: 72  DRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYS---SSRYDDYDRYRRSRSRSYER-- 126

Query: 112 VENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEING 171
                        +    ++ +  +  ++ P+                          N 
Sbjct: 127 -------------RRSRSRSFDYNYRRSYSPR--------------------------NS 147

Query: 172 RKIKLIEGSKRHS-----RSRSRSRSRTRSSSRSRSRSR-SRSRKSYSRSRSRSRSRSRS 225
           R       S+ HS     + R+RS SR++S+SRSRS+S+  +  K+ SRSRS S +++R 
Sbjct: 148 RPTGRPRRSRSHSDNDRFKHRNRSFSRSKSNSRSRSKSQPKKEMKAKSRSRSASHTKTRG 207

Query: 226 KSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRS 267
            S++ S++     S+    S + + P S  + RS+SRSRS+S
Sbjct: 208 TSKTDSKTHYKSGSRYEKESRKKEPPRSKSQSRSQSRSRSKS 249


>gi|4506901 splicing factor, arginine/serine-rich 3 [Homo sapiens]
          Length = 164

 Score = 86.3 bits (212), Expect = 3e-17
 Identities = 70/212 (33%), Positives = 88/212 (41%), Gaps = 62/212 (29%)

Query: 4   CRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR---GFGFVEFEDPRDADDAVYELDGK 60
           C+V++G L     + ++ER F  YG +R + + R   GF FVEFEDPRDA DAV ELDG+
Sbjct: 10  CKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGR 69

Query: 61  ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRND--RRNAPPVRTENRLIVENLSSR 118
            LC  RV +E +       R R R       RRPR+D  RR+ PP R   R         
Sbjct: 70  TLCGCRVRVELSNGEK---RSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPR--------- 117

Query: 119 VSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE 178
                 + F R        D  R +                                   
Sbjct: 118 -----RRSFSRSRSRSLSRDRRRER----------------------------------- 137

Query: 179 GSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRK 210
                S SR R+   +RS SRSRSRSRS  RK
Sbjct: 138 -----SLSRERNHKPSRSFSRSRSRSRSNERK 164



 Score = 61.2 bits (147), Expect = 9e-10
 Identities = 50/127 (39%), Positives = 66/127 (51%), Gaps = 25/127 (19%)

Query: 149 VEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRS-----RTRSSSRSRS- 202
           VEF    D  +A+ +L G+ + G +++ +E S    RSR+R        R R   R RS 
Sbjct: 51  VEFEDPRDAADAVRELDGRTLCGCRVR-VELSNGEKRSRNRGPPPSWGRRPRDDYRRRSP 109

Query: 203 --RSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSR 260
             R RS  R+S+SRSRSRS SR R + RS+SR              R+  P+   R  SR
Sbjct: 110 PPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRE-------------RNHKPS---RSFSR 153

Query: 261 SRSRSRS 267
           SRSRSRS
Sbjct: 154 SRSRSRS 160


>gi|148612890 serine-arginine repressor protein [Homo sapiens]
          Length = 261

 Score = 85.1 bits (209), Expect = 6e-17
 Identities = 84/272 (30%), Positives = 130/272 (47%), Gaps = 41/272 (15%)

Query: 6   VFIGRLNPAAREKDVERFFKGYGRIRDIDLK--------RGFGFVEFEDPRDADDAVYEL 57
           +FI  +  A R +D+ R F  YG I D+ +         RGF +V+FED RDA+DA+Y L
Sbjct: 12  LFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNL 71

Query: 58  DGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSS 117
           + K +C  ++ I+ A+   R   G+ +  +R     P + RR+  P +   R      S 
Sbjct: 72  NRKWVCGRQIEIQFAQG-DRKTPGQMKSKERHPC-SPSDHRRSRSPSQRRTR------SR 123

Query: 118 RVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLI 177
             SW       R+  +      HR           SY   K+  + L  +  + R+ +  
Sbjct: 124 SSSW----GRNRRRSDSLKESRHRR---------FSYSQSKSRSKSLPRRSTSARQSRT- 169

Query: 178 EGSKRHSRSRSRSRSRT---RSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSP 234
              +R+  SR RSRS++   RS S  +S+S S  +++ S ++SRS  R    S S++RSP
Sbjct: 170 --PRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGR---HSDSIARSP 224

Query: 235 VPEKSQKRGSSSRSK-SPASVDRQRSRSRSRS 265
              KS K  ++S +K   A     RS SRSRS
Sbjct: 225 C--KSPKGYTNSETKVQTAKHSHFRSHSRSRS 254



 Score = 58.5 bits (140), Expect = 6e-09
 Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 31/147 (21%)

Query: 149 VEFASYGDLKNAIEKLSGKEINGRKIKL------------IEGSKRH---------SRSR 187
           V+F    D ++A+  L+ K + GR+I++            ++  +RH         SRS 
Sbjct: 56  VQFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSP 115

Query: 188 SRSRSRTRSSSRSRSRSRSRSRK-------SYSRSRSRSRSRSRSKSRSVSRSPVPEKSQ 240
           S+ R+R+RSSS  R+R RS S K       SYS+S+SRS+S  R +S S  +S  P ++ 
Sbjct: 116 SQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPR-RSTSARQSRTPRRN- 173

Query: 241 KRGSSSRSKSPASVDRQRSRSRSRSRS 267
             GS  RS+S +   R +S  +S+S S
Sbjct: 174 -FGSRGRSRSKSLQKRSKSIGKSQSSS 199


>gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo
           sapiens]
          Length = 1031

 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 46/93 (49%), Positives = 56/93 (60%), Gaps = 1/93 (1%)

Query: 179 GSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEK 238
           G  R SRSR R R R RS SR + RSRSR RK   RSRSR R RSR + RS SR     +
Sbjct: 35  GDDRRSRSRDRDRRRERSRSRDKRRSRSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSR 94

Query: 239 SQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSG 271
           S+ RG  SRS SP +  + ++ +RSRS+    G
Sbjct: 95  SRSRGRRSRSSSPGNKSK-KTENRSRSKEKTDG 126



 Score = 58.2 bits (139), Expect = 8e-09
 Identities = 46/107 (42%), Positives = 54/107 (50%), Gaps = 21/107 (19%)

Query: 187 RSRSRSRTRSSSRSRSRSRSRSRK-----------SYSRSRSRSRSRSRSKSRSVSRSPV 235
           R     R RS+SR RS SRSRSR              SRSR R R R RS+SR   RS  
Sbjct: 3   RESRHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRSRS 62

Query: 236 PEKSQKRGSSSRSKSPA-------SVDRQRSRSRS---RSRSVDSGN 272
            ++ + R S SR +  +       S DR+RSRSRS   RSRS   GN
Sbjct: 63  RDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGN 109



 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 6/101 (5%)

Query: 172 RKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRS------RSRSRSRSRS 225
           R  K +  S+   R RSR R R+RS  R RSRSRSR R+S S S      ++ +RSRS+ 
Sbjct: 63  RDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKKTENRSRSKE 122

Query: 226 KSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSR 266
           K+     S   +K +      + K   + D+ +     R R
Sbjct: 123 KTDGGESSKEKKKDKDDKEDEKEKDAGNFDQNKLEEEMRKR 163



 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 41/102 (40%), Positives = 54/102 (52%), Gaps = 18/102 (17%)

Query: 181 KRHSRSR-------SRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRS 233
           KR SRSR       SRSR R RS  R RSRSR R R+S SRSR R RSRS S      ++
Sbjct: 57  KRRSRSRDRKRLRRSRSRERDRSRERRRSRSRDR-RRSRSRSRGR-RSRSSSPGNKSKKT 114

Query: 234 PVPEKSQKR---GSSSRSKSPASVDRQRSRSRSRSRSVDSGN 272
               +S+++   G SS+ K     D++  + +      D+GN
Sbjct: 115 ENRSRSKEKTDGGESSKEKKKDKDDKEDEKEK------DAGN 150


>gi|119226260 calcium homeostasis endoplasmic reticulum protein
           [Homo sapiens]
          Length = 916

 Score = 79.0 bits (193), Expect = 4e-15
 Identities = 51/82 (62%), Positives = 58/82 (70%), Gaps = 1/82 (1%)

Query: 184 SRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRG 243
           SRSRSRS+SR RSSSRS SRS S+S  SYSRSRSRS SRS S+SRS SRS       +  
Sbjct: 737 SRSRSRSKSRGRSSSRSNSRS-SKSSGSYSRSRSRSCSRSYSRSRSRSRSRSRSSRSRSR 795

Query: 244 SSSRSKSPASVDRQRSRSRSRS 265
           S SRS+S +    +R RSRSRS
Sbjct: 796 SQSRSRSKSYSPGRRRRSRSRS 817



 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 48/94 (51%), Positives = 59/94 (62%), Gaps = 3/94 (3%)

Query: 163 KLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSR 222
           K  G+  +    +  + S  +SRSRSRS SR+ S SRSRSRSRSRS +S SRS+SRSRS+
Sbjct: 744 KSRGRSSSRSNSRSSKSSGSYSRSRSRSCSRSYSRSRSRSRSRSRSSRSRSRSQSRSRSK 803

Query: 223 SRS---KSRSVSRSPVPEKSQKRGSSSRSKSPAS 253
           S S   + RS SRSP P  S   GS+S    P S
Sbjct: 804 SYSPGRRRRSRSRSPTPPSSAGLGSNSAPPIPDS 837



 Score = 58.2 bits (139), Expect = 8e-09
 Identities = 42/77 (54%), Positives = 48/77 (62%), Gaps = 9/77 (11%)

Query: 195 RSSSRSRSRSRSRSRKSY-SRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPA- 252
           R+  R+R R     R S  SRSRSRS+SR RS SRS SRS     S+  GS SRS+S + 
Sbjct: 718 RAKMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSRSNSRS-----SKSSGSYSRSRSRSC 772

Query: 253 --SVDRQRSRSRSRSRS 267
             S  R RSRSRSRSRS
Sbjct: 773 SRSYSRSRSRSRSRSRS 789


>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
          Length = 330

 Score = 76.3 bits (186), Expect = 3e-14
 Identities = 55/110 (50%), Positives = 66/110 (60%), Gaps = 19/110 (17%)

Query: 178 EGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPE 237
           + +K+ S  RSRS+SR   SS SRS SRS S  S SRSRSRSRSRS S S+S SRS   E
Sbjct: 192 DSNKKKSNRRSRSKSR---SSHSRSSSRSSSPSS-SRSRSRSRSRSSSSSQSRSRSSSRE 247

Query: 238 KSQKRGSSSRSK---------------SPASVDRQRSRSRSRSRSVDSGN 272
           +S+ RGS SRS                S +S   +R+R RSRSRS  SG+
Sbjct: 248 RSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGD 297



 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 53/92 (57%), Positives = 64/92 (69%), Gaps = 9/92 (9%)

Query: 180 SKRHSRSRSRSRSRTRSSSRSRSRS----RSRSRKSYSRSRSRS-RSRSRSKSRSV-SRS 233
           S   SRSRSRSRSR+ SSS+SRSRS    RSRSR S SRS SRS R  S  + RS  S S
Sbjct: 219 SPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSS 278

Query: 234 PVPEKSQKRGSSSRSKSPASVDRQRSRSRSRS 265
             PE+++KR   SRS+S +S DR++ R+RSRS
Sbjct: 279 SSPERNRKR---SRSRSSSSGDRKKRRTRSRS 307



 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 62/135 (45%), Positives = 75/135 (55%), Gaps = 30/135 (22%)

Query: 162 EKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKS-YSRSRSRSR 220
           E+ S K+ + R+ +      R S SRS SRS + SSSRSRSRSRSRS  S  SRSRS SR
Sbjct: 190 EEDSNKKKSNRRSR---SKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSR 246

Query: 221 SRSRS---KSRSVSRS----------------PVPEKSQKRGSSSRSKSPASVDRQ---- 257
            RSRS   KSRS SRS                  PE+++KR   SRS+S +S DR+    
Sbjct: 247 ERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKR---SRSRSSSSGDRKKRRT 303

Query: 258 RSRSRSRSRSVDSGN 272
           RSRS  R     SG+
Sbjct: 304 RSRSPERRHRSSSGS 318



 Score = 52.0 bits (123), Expect = 6e-07
 Identities = 42/87 (48%), Positives = 49/87 (56%), Gaps = 16/87 (18%)

Query: 180 SKRHSRSRSRSR-SRTRSSSRSRSRSRSRSRKSYS-------RSRSRSRSRS-----RSK 226
           S+  SR RSRSR S++RSSSRS   S S  ++SYS       R+R RSRSRS     R K
Sbjct: 241 SRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKK 300

Query: 227 SRSVSRSPVPEKSQKRGSS---SRSKS 250
            R+ SRSP        GSS   SRS S
Sbjct: 301 RRTRSRSPERRHRSSSGSSHSGSRSSS 327



 Score = 49.3 bits (116), Expect = 4e-06
 Identities = 64/223 (28%), Positives = 88/223 (39%), Gaps = 34/223 (15%)

Query: 11  LNPAAREKDVE-RFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSERVTI 69
           + PA+  K+VE +  +G     D DL + +   E ED  DAD + Y LD  E        
Sbjct: 139 VGPASILKEVEDKESEGEEEDEDEDLSK-YKLDEDEDEDDADLSKYNLDASEEEDSNKKK 197

Query: 70  EHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMR 129
            + R+RS+      R S R SS           P  + +R    + SS  S    +   R
Sbjct: 198 SNRRSRSKSRSSHSRSSSRSSS-----------PSSSRSRSRSRSRSSSSSQSRSRSSSR 246

Query: 130 QAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSR 189
           +                      S G    +  +      + RK      S    R+R R
Sbjct: 247 ERSR-------------------SRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKR 287

Query: 190 SRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSR 232
           SRSR+ SSS  R + R+RSR    R RS S S S S SRS S+
Sbjct: 288 SRSRS-SSSGDRKKRRTRSRSPERRHRSSSGS-SHSGSRSSSK 328


>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
          Length = 320

 Score = 76.3 bits (186), Expect = 3e-14
 Identities = 55/110 (50%), Positives = 66/110 (60%), Gaps = 19/110 (17%)

Query: 178 EGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPE 237
           + +K+ S  RSRS+SR   SS SRS SRS S  S SRSRSRSRSRS S S+S SRS   E
Sbjct: 192 DSNKKKSNRRSRSKSR---SSHSRSSSRSSSPSS-SRSRSRSRSRSSSSSQSRSRSSSRE 247

Query: 238 KSQKRGSSSRSK---------------SPASVDRQRSRSRSRSRSVDSGN 272
           +S+ RGS SRS                S +S   +R+R RSRSRS  SG+
Sbjct: 248 RSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGD 297



 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 53/92 (57%), Positives = 64/92 (69%), Gaps = 9/92 (9%)

Query: 180 SKRHSRSRSRSRSRTRSSSRSRSRS----RSRSRKSYSRSRSRS-RSRSRSKSRSV-SRS 233
           S   SRSRSRSRSR+ SSS+SRSRS    RSRSR S SRS SRS R  S  + RS  S S
Sbjct: 219 SPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSS 278

Query: 234 PVPEKSQKRGSSSRSKSPASVDRQRSRSRSRS 265
             PE+++KR   SRS+S +S DR++ R+RSRS
Sbjct: 279 SSPERNRKR---SRSRSSSSGDRKKRRTRSRS 307



 Score = 70.9 bits (172), Expect = 1e-12
 Identities = 60/131 (45%), Positives = 72/131 (54%), Gaps = 24/131 (18%)

Query: 162 EKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKS-YSRSRSRSR 220
           E+ S K+ + R+ +      R S SRS SRS + SSSRSRSRSRSRS  S  SRSRS SR
Sbjct: 190 EEDSNKKKSNRRSR---SKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSR 246

Query: 221 SRSRS---KSRSVSRS----------------PVPEKSQKRGSSSRSKSPASVDRQRSRS 261
            RSRS   KSRS SRS                  PE+++KR S SRS S     ++R+RS
Sbjct: 247 ERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKR-SRSRSSSSGDRKKRRTRS 305

Query: 262 RSRSRSVDSGN 272
           RS    V   N
Sbjct: 306 RSPESQVIGEN 316



 Score = 45.1 bits (105), Expect = 7e-05
 Identities = 61/224 (27%), Positives = 83/224 (37%), Gaps = 54/224 (24%)

Query: 11  LNPAAREKDVE-RFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSERVTI 69
           + PA+  K+VE +  +G     D DL + +   E ED  DAD + Y LD  E        
Sbjct: 139 VGPASILKEVEDKESEGEEEDEDEDLSK-YKLDEDEDEDDADLSKYNLDASEEEDSNKKK 197

Query: 70  EHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMR 129
            + R+RS+      R S R SS  P + R      R+ +R    + S   S    ++  R
Sbjct: 198 SNRRSRSKSRSSHSRSSSRSSS--PSSSRS-----RSRSRSRSSSSSQSRSRSSSRERSR 250

Query: 130 QAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSR 189
             G  +                                            S R  R  S 
Sbjct: 251 SRGSKS------------------------------------------RSSSRSHRGSSS 268

Query: 190 SRSRTRSSSRS---RSRSRSRSRKSYSRSRSRSRSRSRSKSRSV 230
            R R+ SSS S   R+R RSRSR S S  R + R+RSRS    V
Sbjct: 269 PRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPESQV 312


>gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo
           sapiens]
          Length = 375

 Score = 75.9 bits (185), Expect = 4e-14
 Identities = 54/105 (51%), Positives = 68/105 (64%), Gaps = 9/105 (8%)

Query: 165 SGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSR 224
           +G++ + RK +     + HSRSRSR R R RS SR R +SRSRSR+   R +SRSRSR R
Sbjct: 48  NGEDRHKRKERKSSRGRSHSRSRSRER-RHRSRSRERKKSRSRSRE---RKKSRSRSRER 103

Query: 225 SKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVD 269
            KSRS SR    E+ ++  S SRS+S     R RSRSR+RSRS D
Sbjct: 104 KKSRSRSR----ERKRRIRSRSRSRSRHR-HRTRSRSRTRSRSRD 143



 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 49/118 (41%), Positives = 65/118 (55%), Gaps = 9/118 (7%)

Query: 158 KNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRS 217
           K+  E+ + KE +  K +    S  +   R + + R  S  RS SRSRSR R+  SRSR 
Sbjct: 23  KHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRSRE 82

Query: 218 RSRSRSRSKSRSVSRSPVPEKSQKRGSS--------SRSKSPASVDRQRSRSRSRSRS 267
           R +SRSRS+ R  SRS   E+ + R  S        SRS+S  S  R R+RSRSR+RS
Sbjct: 83  RKKSRSRSRERKKSRSRSRERKKSRSRSRERKRRIRSRSRS-RSRHRHRTRSRSRTRS 139



 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 42/86 (48%), Positives = 52/86 (60%), Gaps = 4/86 (4%)

Query: 178 EGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPE 237
           E  K  SRSR R +SR+RS  R +SRSRSR RK   RSRSRSRSR R ++RS SR+    
Sbjct: 82  ERKKSRSRSRERKKSRSRSRERKKSRSRSRERKRRIRSRSRSRSRHRHRTRSRSRT---- 137

Query: 238 KSQKRGSSSRSKSPASVDRQRSRSRS 263
           +S+ R    R + P    R  SR+ S
Sbjct: 138 RSRSRDRKKRIEKPRRFSRSLSRTPS 163



 Score = 66.2 bits (160), Expect = 3e-11
 Identities = 46/91 (50%), Positives = 55/91 (60%), Gaps = 5/91 (5%)

Query: 181 KRH-SRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRS---RSRSKSRSVSRSPVP 236
           +RH SRSR R +SR+RS  R +SRSRSR RK  SRSRSR R    RSRS+SRS  R    
Sbjct: 74  RRHRSRSRERKKSRSRSRERKKSRSRSRERKK-SRSRSRERKRRIRSRSRSRSRHRHRTR 132

Query: 237 EKSQKRGSSSRSKSPASVDRQRSRSRSRSRS 267
            +S+ R  S   K      R+ SRS SR+ S
Sbjct: 133 SRSRTRSRSRDRKKRIEKPRRFSRSLSRTPS 163



 Score = 63.9 bits (154), Expect = 1e-10
 Identities = 48/109 (44%), Positives = 62/109 (56%), Gaps = 8/109 (7%)

Query: 162 EKLSGKEINGRKIKLIEGSKRHSRSRS---RSRSRTRSSSRSRSRSRSRSRKSYSRSRSR 218
           +K   +E N ++    +G +R + S +   R + + R SSR RS SRSRSR+     R R
Sbjct: 22  KKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRER----RHR 77

Query: 219 SRSRSRSKSRSVSRSPVPEKSQKR-GSSSRSKSPASVDRQRSRSRSRSR 266
           SRSR R KSRS SR     +S+ R    SRS+S     R RSRSRSRSR
Sbjct: 78  SRSRERKKSRSRSRERKKSRSRSRERKKSRSRSRERKRRIRSRSRSRSR 126



 Score = 55.1 bits (131), Expect = 7e-08
 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 3/104 (2%)

Query: 163 KLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSR 222
           K S      RK       +R  R RSRSRSR+R   R+RSRSR+RSR   SR R +   +
Sbjct: 94  KKSRSRSRERKKSRSRSRERKRRIRSRSRSRSRHRHRTRSRSRTRSR---SRDRKKRIEK 150

Query: 223 SRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSR 266
            R  SRS+SR+P P   + R ++  ++   +   +R++     R
Sbjct: 151 PRRFSRSLSRTPSPPPFRGRNTAMDAQEALARRLERAKKLQEQR 194



 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 6/94 (6%)

Query: 178 EGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVS-----R 232
           + SK+H       +  +    R R  S       + R + R  SR RS SRS S     R
Sbjct: 19  KSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKR-KERKSSRGRSHSRSRSRERRHR 77

Query: 233 SPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSR 266
           S   E+ + R  S   K   S  R+R +SRSRSR
Sbjct: 78  SRSRERKKSRSRSRERKKSRSRSRERKKSRSRSR 111



 Score = 28.9 bits (63), Expect = 5.0
 Identities = 20/74 (27%), Positives = 25/74 (33%), Gaps = 12/74 (16%)

Query: 193 RTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPA 252
           R  S  +S  + +S        S  + R R  S      R    E+   RG         
Sbjct: 13  RHESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRG--------- 63

Query: 253 SVDRQRSRSRSRSR 266
              R  SRSRSR R
Sbjct: 64  ---RSHSRSRSRER 74


>gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo
           sapiens]
          Length = 434

 Score = 75.9 bits (185), Expect = 4e-14
 Identities = 54/105 (51%), Positives = 68/105 (64%), Gaps = 9/105 (8%)

Query: 165 SGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSR 224
           +G++ + RK +     + HSRSRSR R R RS SR R +SRSRSR+   R +SRSRSR R
Sbjct: 107 NGEDRHKRKERKSSRGRSHSRSRSRER-RHRSRSRERKKSRSRSRE---RKKSRSRSRER 162

Query: 225 SKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVD 269
            KSRS SR    E+ ++  S SRS+S     R RSRSR+RSRS D
Sbjct: 163 KKSRSRSR----ERKRRIRSRSRSRSRHR-HRTRSRSRTRSRSRD 202



 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 42/86 (48%), Positives = 52/86 (60%), Gaps = 4/86 (4%)

Query: 178 EGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPE 237
           E  K  SRSR R +SR+RS  R +SRSRSR RK   RSRSRSRSR R ++RS SR+    
Sbjct: 141 ERKKSRSRSRERKKSRSRSRERKKSRSRSRERKRRIRSRSRSRSRHRHRTRSRSRT---- 196

Query: 238 KSQKRGSSSRSKSPASVDRQRSRSRS 263
           +S+ R    R + P    R  SR+ S
Sbjct: 197 RSRSRDRKKRIEKPRRFSRSLSRTPS 222



 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 34/210 (16%)

Query: 73  RARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAG 132
           R+RSR   GR   S   SS++ +++  N     ++     E L+S            + G
Sbjct: 62  RSRSRSKEGRRHESKDKSSKKHKSEEHNDKEHSSDKGR--ERLNSS-----------ENG 108

Query: 133 EVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRS 192
           E    D H+ K  +      S+   ++   +   +    +K +     ++ SRSRSR R 
Sbjct: 109 E----DRHKRKERKSS-RGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERK 163

Query: 193 RTRSSSRSR-----SRSRSRSR---KSYSRSRSRSRSRSRSK--------SRSVSRSPVP 236
           ++RS SR R     SRSRSRSR   ++ SRSR+RSRSR R K        SRS+SR+P P
Sbjct: 164 KSRSRSRERKRRIRSRSRSRSRHRHRTRSRSRTRSRSRDRKKRIEKPRRFSRSLSRTPSP 223

Query: 237 EKSQKRGSSSRSKSPASVDRQRSRSRSRSR 266
              + R ++  ++   +   +R++     R
Sbjct: 224 PPFRGRNTAMDAQEALARRLERAKKLQEQR 253



 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 16/99 (16%)

Query: 180 SKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKS 239
           + +H  SRSRSRSR R     + +S +  RK  SRSRS+   R  SK +S  +    E +
Sbjct: 35  ASKHHYSRSRSRSRER-----KRKSDNEGRKHRSRSRSKEGRRHESKDKSSKKHKSEEHN 89

Query: 240 QKRGSSSRSKSPAS-----------VDRQRSRSRSRSRS 267
            K  SS + +   +            +R+ SR RS SRS
Sbjct: 90  DKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRS 128



 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 181 KRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQ 240
           K+  +S      R      SRSRSRSR RK  S +  R + RSRS+S+   R    +KS 
Sbjct: 22  KKKEQSEVSVSPRASKHHYSRSRSRSRERKRKSDNEGR-KHRSRSRSKEGRRHESKDKSS 80

Query: 241 KRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN 272
           K     + KS    D++ S  + R R   S N
Sbjct: 81  K-----KHKSEEHNDKEHSSDKGRERLNSSEN 107



 Score = 37.0 bits (84), Expect = 0.018
 Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 190 SRSRTRSSSRSR-SRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRS 248
           S  R +   +S  S S   S+  YSRSRSRSR R R KS +  R        K G    S
Sbjct: 17  SPDRDKKKEQSEVSVSPRASKHHYSRSRSRSRERKR-KSDNEGRKHRSRSRSKEGRRHES 75

Query: 249 KSPASVDRQRSRSRSRSRSVDSG 271
           K  +S   +      +  S D G
Sbjct: 76  KDKSSKKHKSEEHNDKEHSSDKG 98


>gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain
           containing B [Homo sapiens]
          Length = 546

 Score = 74.7 bits (182), Expect = 8e-14
 Identities = 81/247 (32%), Positives = 118/247 (47%), Gaps = 31/247 (12%)

Query: 36  KRGFGFVEF--EDPRDADDAVYELDGKELCSERVTIEHARARSRG-----GRGRGRYSDR 88
           + G G   F  E  R+ +    E + KE   ER     +R+  RG      R R R+  R
Sbjct: 283 REGHGSSSFDRELEREKERQRLEREAKEREKER---RRSRSIDRGLERRRSRSRERHRSR 339

Query: 89  FSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGV 148
             SR  + DRR+    R       E  + R   +D +D+ ++ G     +  R +  E  
Sbjct: 340 SRSRDRKGDRRDRDRER-------EKENERGRRRD-RDYDKERGNER--EKERERSRERS 389

Query: 149 VEFASYGDLKNAIEKLSGKEINGRKIKL-IEGSKRHSRSRSRSRS-RTRSSSRS---RSR 203
            E  S G+++    K    +   R  K   +  K+HSRSRSR R  R+RS SR+   RSR
Sbjct: 390 KEQRSRGEVEEKKHKEDKDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSR 449

Query: 204 SRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKR-GSSSRSKSPASVDRQRSRSR 262
           SRS+ + S  ++ S+ +S  RS+S S  R+   EKS+KR  S S+ KS     R+RSRS+
Sbjct: 450 SRSKEKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKREHSPSKEKS-----RKRSRSK 504

Query: 263 SRSRSVD 269
            RS   D
Sbjct: 505 ERSHKRD 511



 Score = 52.0 bits (123), Expect = 6e-07
 Identities = 52/196 (26%), Positives = 78/196 (39%), Gaps = 4/196 (2%)

Query: 70  EHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMR 129
           E  R+RSR    +G   DR   R   N+R        +     E    R   ++     R
Sbjct: 334 ERHRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKERGNEREKERERSRERSKEQR 393

Query: 130 QAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSR 189
             GEV        K +    +       +    +   +E   R       + + SRSRS+
Sbjct: 394 SRGEVEEKKHKEDKDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSK 453

Query: 190 SRS---RTRSSSRSRSRSRSRSR-KSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSS 245
            +S   +  S  +S  RSRS S+ ++ S  +S+ R  S SK +S  RS   E+S KR  S
Sbjct: 454 EKSSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKREHSPSKEKSRKRSRSKERSHKRDHS 513

Query: 246 SRSKSPASVDRQRSRS 261
                    DR+RS+S
Sbjct: 514 DSKDQSDKHDRRRSQS 529



 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 34/92 (36%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 181 KRHSRSRSRSRSRTRSSSRSRSRSRSRS---RKSYSRSRSRSRSRSRSKSRSVSRSPVPE 237
           +R SRS  RS S  RS  RSRSRS  R      S+ R   R + R R +  +  R     
Sbjct: 257 RRRSRSPRRSLSPRRSPRRSRSRSHHREGHGSSSFDRELEREKERQRLEREAKEREKERR 316

Query: 238 KSQKRGSSSRSKSPASVDRQRSRSRSRSRSVD 269
           +S+        +   S +R RSRSRSR R  D
Sbjct: 317 RSRSIDRGLERRRSRSRERHRSRSRSRDRKGD 348



 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 51/153 (33%), Positives = 60/153 (39%), Gaps = 53/153 (34%)

Query: 172 RKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSR---------------------- 209
           R+ K  E  +R SRS  R   R RS SR R RSRSRSR                      
Sbjct: 306 REAKEREKERRRSRSIDRGLERRRSRSRERHRSRSRSRDRKGDRRDRDREREKENERGRR 365

Query: 210 --------KSYSRSRSRSRSRSRSKSRSVSRSPVPEK-----------------SQKRGS 244
                   +   R + R RSR RSK +  SR  V EK                 S+K   
Sbjct: 366 RDRDYDKERGNEREKERERSRERSKEQR-SRGEVEEKKHKEDKDDRRHRDDKRDSKKEKK 424

Query: 245 SSRSKSPASVDRQRSRSR-----SRSRSVDSGN 272
            SRS+S     R RSRSR     SRSRS +  +
Sbjct: 425 HSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSS 457



 Score = 33.9 bits (76), Expect = 0.16
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 16/90 (17%)

Query: 198 SRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDR- 256
           +R R   +     +    R   R RSRS  RS+S    P +S+ R         +S DR 
Sbjct: 235 TRPRKIKKDGKEGAEEIDRHVERRRSRSPRRSLSPRRSPRRSRSRSHHREGHGSSSFDRE 294

Query: 257 ---------------QRSRSRSRSRSVDSG 271
                          +R + R RSRS+D G
Sbjct: 295 LEREKERQRLEREAKEREKERRRSRSIDRG 324


>gi|50962882 G patch domain containing 8 [Homo sapiens]
          Length = 1502

 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 72/206 (34%), Positives = 99/206 (48%), Gaps = 33/206 (16%)

Query: 70   EHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMR 129
            EH+R+RSR GR   R+S   SSRR  +   +A     ++    +   S  S+ D  D  R
Sbjct: 848  EHSRSRSRSGR---RHSSHRSSRRSYSSSSDASS--DQSCYSRQRSYSDDSYSDYSDRSR 902

Query: 130  QAGEVTF--------ADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSK 181
            +  + +         +  HR K ++       Y         LS  +   R       S+
Sbjct: 903  RHSKRSHDSDDSDYASSKHRSKRHKYSSSDDDYS--------LSCSQSRSR-------SR 947

Query: 182  RHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQK 241
             H+R RSRSR R+RSSS SRSRS+ RSR + + S  RSRS SR +SRS +RSP    SQ+
Sbjct: 948  SHTRERSRSRGRSRSSSCSRSRSKRRSRSTTAHSWQRSRSYSRDRSRS-TRSP----SQR 1002

Query: 242  RGSSSRSKSPASVDRQRSRSRSRSRS 267
             GS  RS    S + + S  R   RS
Sbjct: 1003 SGSRKRSWGHESPEERHSGRRDFIRS 1028



 Score = 48.1 bits (113), Expect = 8e-06
 Identities = 38/93 (40%), Positives = 49/93 (52%), Gaps = 14/93 (15%)

Query: 180 SKRHSRSRSRSRSRTRSSSRSRSRSR--SRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPE 237
           S+RHS+    S     +SS+ RS+    S S   YS S S+SRSRSRS +R        E
Sbjct: 901 SRRHSKRSHDSDDSDYASSKHRSKRHKYSSSDDDYSLSCSQSRSRSRSHTR--------E 952

Query: 238 KSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDS 270
           +S+ RG S  S    S  R RS+ RSRS +  S
Sbjct: 953 RSRSRGRSRSS----SCSRSRSKRRSRSTTAHS 981



 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 52/155 (33%), Positives = 58/155 (37%), Gaps = 62/155 (40%)

Query: 178 EGSKRHSRSRSRS---RSRTRSSSRS-------------RSRSRSRSRKSYSRSRSRSRS 221
           +    HSRSRSRS    S  RSS RS              SR RS S  SYS    RSR 
Sbjct: 844 DSGSEHSRSRSRSGRRHSSHRSSRRSYSSSSDASSDQSCYSRQRSYSDDSYSDYSDRSRR 903

Query: 222 RSR---------------------------------SKSRSVSRSPVPEKSQKRGSS--- 245
            S+                                 S+SRS SRS   E+S+ RG S   
Sbjct: 904 HSKRSHDSDDSDYASSKHRSKRHKYSSSDDDYSLSCSQSRSRSRSHTRERSRSRGRSRSS 963

Query: 246 ----------SRSKSPASVDRQRSRSRSRSRSVDS 270
                     SRS +  S  R RS SR RSRS  S
Sbjct: 964 SCSRSRSKRRSRSTTAHSWQRSRSYSRDRSRSTRS 998



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 43/112 (38%), Positives = 48/112 (42%), Gaps = 20/112 (17%)

Query: 179 GSKRHSRSRSRSR-------SRTRSSSRSRSRSRSR---------SRKSYSRSRSRS--- 219
           G+KR SRS  RS+       S   SS R   +S S+         S   +SRSRSRS   
Sbjct: 800 GTKRSSRSSHRSQPSSGDEDSDDASSHRLHQKSPSQYSEEEEEEDSGSEHSRSRSRSGRR 859

Query: 220 RSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRS-RSVDS 270
            S  RS  RS S S      Q   S  RS S  S      RSR  S RS DS
Sbjct: 860 HSSHRSSRRSYSSSSDASSDQSCYSRQRSYSDDSYSDYSDRSRRHSKRSHDS 911



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 36/118 (30%), Positives = 50/118 (42%), Gaps = 5/118 (4%)

Query: 160 AIEKLSGK--EINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRS 217
           A E  SGK  E  G       G ++H      S  + R+ ++  SRS  RS+ S     S
Sbjct: 761 AEEGSSGKKDEGGGGSSSQDHGGRKHKGELPPSSCQRRAGTKRSSRSSHRSQPSSGDEDS 820

Query: 218 RSRSRSRSKSRSVSRSPVPEKSQKRGSS---SRSKSPASVDRQRSRSRSRSRSVDSGN 272
              S  R   +S S+    E+ +  GS    SRS+S       RS  RS S S D+ +
Sbjct: 821 DDASSHRLHQKSPSQYSEEEEEEDSGSEHSRSRSRSGRRHSSHRSSRRSYSSSSDASS 878



 Score = 35.4 bits (80), Expect = 0.053
 Identities = 20/82 (24%), Positives = 30/82 (36%)

Query: 179 GSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEK 238
           G    S +    RS      RS    R + +K + +S    R          S++   EK
Sbjct: 648 GGSHGSETEDTGRSLPSKKERSGKSHRHKKKKKHKKSSKHKRKHKADTEEKSSKAESGEK 707

Query: 239 SQKRGSSSRSKSPASVDRQRSR 260
           S+KR    R K+ +S      R
Sbjct: 708 SKKRKKRKRKKNKSSAPADSER 729



 Score = 34.3 bits (77), Expect = 0.12
 Identities = 31/88 (35%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 183 HSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKR 242
           H +S S+              SRSRSR     S  RS  RS S S   S S     S++R
Sbjct: 829 HQKSPSQYSEEEEEEDSGSEHSRSRSRSGRRHSSHRSSRRSYSSSSDAS-SDQSCYSRQR 887

Query: 243 GSSSRSKSPASVDRQRSRSRSRSRSVDS 270
             S  S S  S DR R  S+    S DS
Sbjct: 888 SYSDDSYSDYS-DRSRRHSKRSHDSDDS 914



 Score = 33.1 bits (74), Expect = 0.27
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 11/108 (10%)

Query: 165 SGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSR 224
           SGK    +K K  + S +H R           SS++ S  +S+ RK   R +++S + + 
Sbjct: 669 SGKSHRHKKKKKHKKSSKHKRKHKADTE--EKSSKAESGEKSKKRKKRKRKKNKSSAPAD 726

Query: 225 SKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN 272
           S+     R P PE     GS S +  P    R +  S+ RS   + G+
Sbjct: 727 SE-----RGPKPEPP---GSGSPA-PPRRRRRAQDDSQRRSLPAEEGS 765


>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
          Length = 484

 Score = 73.9 bits (180), Expect = 1e-13
 Identities = 62/166 (37%), Positives = 85/166 (51%), Gaps = 24/166 (14%)

Query: 110 LIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEI 169
           L+  +L S  S +++++ M++  E            + ++  A   D K    + S    
Sbjct: 205 LVSPSLKSDTSSKEIEEAMKRVREA-----------QSLISAAIEPDKKEEKRRHSRSRS 253

Query: 170 NGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRS-RSRKSYSRSRSRSRSRSRSKSR 228
             R+ +    S RH RSRSRSR R+ S SRSR RS+S R R+S+SR R R RSRS SK+R
Sbjct: 254 RSRR-RRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGR-RSRSTSKTR 311

Query: 229 -------SVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRS 267
                     RS  P KS      SRS   AS +R+R RSRS +RS
Sbjct: 312 DKKKEDKEKKRSKTPPKSYSTARRSRS---ASRERRRRRSRSGTRS 354



 Score = 59.3 bits (142), Expect = 3e-09
 Identities = 48/115 (41%), Positives = 61/115 (53%), Gaps = 27/115 (23%)

Query: 181 KRHSRSRSRSRS----RTRSSSRS---RSRSRSRSR----------------KSYS---R 214
           + HS+SRSR RS    R RS SR    RSRS S++R                KSYS   R
Sbjct: 276 RSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSYSTARR 335

Query: 215 SRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVD 269
           SRS SR R R +SRS +RSP   +S KR   SRS SP    +++ + + + RS D
Sbjct: 336 SRSASRERRRRRSRSGTRSPKKPRSPKR-KLSRSPSPRRHKKEKKKDKDKERSRD 389



 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 55/201 (27%), Positives = 80/201 (39%), Gaps = 33/201 (16%)

Query: 71  HARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQ 130
           H+R+RSR  R R   S R    R R+ RR+    R+  R          S +  +   R+
Sbjct: 248 HSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRR--------SKSPRRRRSHSRE 299

Query: 131 AGEVTFADAH-RPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSR 189
            G  + + +  R K  E         D +    K   K  +         + R SRS SR
Sbjct: 300 RGRRSRSTSKTRDKKKE---------DKEKKRSKTPPKSYS---------TARRSRSASR 341

Query: 190 SRSRTRSSSRSRSRSRSRS-RKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRS 248
            R R RS S +RS  + RS ++  SRS S  R +   K     +    E+S+     S S
Sbjct: 342 ERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKK-----KDKDKERSRDERERSTS 396

Query: 249 KSPASVDRQRSRSRSRSRSVD 269
           K   S D+++ R R      D
Sbjct: 397 KKKKSKDKEKDRERKSESDKD 417



 Score = 36.6 bits (83), Expect = 0.024
 Identities = 43/204 (21%), Positives = 82/204 (40%), Gaps = 12/204 (5%)

Query: 71  HARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMR- 129
           H R+RSR  R    +S   S RR ++ RR     R   R       +R   ++ K+  R 
Sbjct: 266 HRRSRSRSRRRS--HSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDKEKKRS 323

Query: 130 QAGEVTFADAHRPK-LNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRS 188
           +    +++ A R +  +       S    ++  +  S K    RK+      +RH + + 
Sbjct: 324 KTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPK----RKLSRSPSPRRHKKEKK 379

Query: 189 RSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRG-SSSR 247
           + + + RS      R RS S+K  S+ + + R R     + V +       +++G  S +
Sbjct: 380 KDKDKERSRD---ERERSTSKKKKSKDKEKDRERKSESDKDVKQVTRDYDEEEQGYDSEK 436

Query: 248 SKSPASVDRQRSRSRSRSRSVDSG 271
            K       +    +++  SV+ G
Sbjct: 437 EKKEEKKPIETGSPKTKECSVEKG 460


>gi|187960109 RNA binding motif protein 28 [Homo sapiens]
          Length = 759

 Score = 70.9 bits (172), Expect = 1e-12
 Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 14/187 (7%)

Query: 1   MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLK--------RGFGFVEFEDPRDADD 52
           M+G  +F+GRL P+AR + +E  F   G ++   +         RGFG+V F    D   
Sbjct: 1   MAGLTLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQR 60

Query: 53  AVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIV 112
           A+ E+   E C   VT+   + R++        +     + P+   + A     + RLI+
Sbjct: 61  ALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPK--AKKAKVADKKARLII 118

Query: 113 ENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGR 172
            NLS + S  DLK    Q G V   + + P+  +G +    +   KN +E  +GK + G 
Sbjct: 119 RNLSFKCSEDDLKTVFAQFGAV--LEVNIPRKPDGKMRGFGFVQFKNLLE--AGKALKGM 174

Query: 173 KIKLIEG 179
            +K I+G
Sbjct: 175 NMKEIKG 181



 Score = 37.4 bits (85), Expect = 0.014
 Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 7/80 (8%)

Query: 5   RVFIGRLNPAAREKDVERFFKGYGRIRDIDLKR-------GFGFVEFEDPRDADDAVYEL 57
           R+ I  L+    E D++  F  +G + ++++ R       GFGFV+F++  +A  A+  +
Sbjct: 115 RLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGM 174

Query: 58  DGKELCSERVTIEHARARSR 77
           + KE+    V ++ A A+ +
Sbjct: 175 NMKEIKGRTVAVDWAVAKDK 194


>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
          Length = 715

 Score = 69.7 bits (169), Expect = 3e-12
 Identities = 68/200 (34%), Positives = 95/200 (47%), Gaps = 27/200 (13%)

Query: 71  HARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQ 130
           H+RARSR  +G      R S  R  +  ++    RT  R    N S   S +      R 
Sbjct: 311 HSRARSRTRKGILSQMGRHSQSRSHSKGKSQNQSRTPRRGRSHNWSRNPSKERSHSHSRS 370

Query: 131 AGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRS 190
           + +      HR                 ++  K SG+  +G   K     + HSRSRS +
Sbjct: 371 SSK---ERDHRG---------------SSSPRKESGRSQSGSPNK----QRDHSRSRSPN 408

Query: 191 RSRTRSSSRSRSRSRSRSR-KSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSK 249
           ++R RS SRS  ++R RSR +S +++R  SRSRS  K+R  SRS  P K++     SRS+
Sbjct: 409 KARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPYKARDRSRSRSPNKAR---DHSRSR 465

Query: 250 SPASVDRQRSRSRSRSRSVD 269
           SP    R RSRSRS S+  D
Sbjct: 466 SPNKA-RDRSRSRSPSKERD 484



 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 66/203 (32%), Positives = 91/203 (44%), Gaps = 32/203 (15%)

Query: 82  RGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLS---SRVSWQDLKDFMRQAGEVTFAD 138
           R R      SR PR  R  +   RT +R+   +     SR   +  K  + Q G  + + 
Sbjct: 275 RSRPQSHSQSRSPRRSRSGSQK-RTHSRVRSHSWKRNHSRARSRTRKGILSQMGRHSQSR 333

Query: 139 AHRPKLNEGVVEFASYGDLKNAIEK-LSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSS 197
           +H            S G  +N       G+  N  +    E S  HSRS S+ R    SS
Sbjct: 334 SH------------SKGKSQNQSRTPRRGRSHNWSRNPSKERSHSHSRSSSKERDHRGSS 381

Query: 198 SRSRSRSRSRS-----RKSYSRSRS------RSRSRSRSKSRSVSRSPVPEKSQKRGSSS 246
           S  +   RS+S     ++ +SRSRS      RSRSRS  K+R  SRS  P K++     S
Sbjct: 382 SPRKESGRSQSGSPNKQRDHSRSRSPNKARDRSRSRSPYKARDRSRSRSPNKAR---DCS 438

Query: 247 RSKSPASVDRQRSRSRSRSRSVD 269
           RS+SP    R RSRSRS +++ D
Sbjct: 439 RSRSPYKA-RDRSRSRSPNKARD 460



 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 63/219 (28%), Positives = 89/219 (40%), Gaps = 31/219 (14%)

Query: 70  EHARARSRG-----GRGRGRYS--DRFSSRRPRNDR---RNAPPVRTENRLIVENLSSRV 119
           +H+R+RS        R R  Y   DR  SR P   R   R+  P +  +R      S   
Sbjct: 400 DHSRSRSPNKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPYKARDR------SRSR 453

Query: 120 SWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEG 179
           S    +D  R        D  R +      + +  G           KE + R+ +    
Sbjct: 454 SPNKARDHSRSRSPNKARDRSRSRSPSKERDHSQLGS--------PSKERDHRRSRSPSK 505

Query: 180 SK--RHSRSRSRSRSRTRSSSRSRSRSRSRSRK-SYSRSRSRSRSRSRSKSRSVSRSPVP 236
            +  R SRS S+ R   RS S S+ R R +SR  +  R RS+SRS S  +    SRSP  
Sbjct: 506 ERQCRQSRSSSKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQSRSPSK 565

Query: 237 EKSQKRGSS----SRSKSPASVDRQRSRSRSRSRSVDSG 271
           E+ ++R  S       +   S   +R  SRSRS +  SG
Sbjct: 566 ERDRRRWRSPSKERERRQSRSSSEERDHSRSRSPNKQSG 604



 Score = 54.7 bits (130), Expect = 9e-08
 Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 13/102 (12%)

Query: 180 SKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSY---SRSRSRSRSRSRSKSRSVSRSPVP 236
           +K   RS+SRS S  R   +SRS S+ R R+ +   S+ R R +SRS S+ R  SRS  P
Sbjct: 540 NKERDRSQSRSPSEEREHRQSRSPSKERDRRRWRSPSKERERRQSRSSSEERDHSRSRSP 599

Query: 237 EK---------SQKRGSSSRSKSPASVDRQRSRSRSRSRSVD 269
            K         S K  + SRS++P S +   S+SR+ S+  D
Sbjct: 600 NKQSGYSRPRASSKEKAHSRSRTP-SKEGNHSQSRTSSKESD 640



 Score = 51.6 bits (122), Expect = 7e-07
 Identities = 37/91 (40%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 183 HSRSRSRSRSRTRSSSRSRSRSRSRS-RKSYSRSRSRSRSR--SRSKSRSVSRSPVPEKS 239
           HS+SRS  RSR+ S  R+ SR RS S ++++SR+RSR+R    S+    S SRS    KS
Sbjct: 281 HSQSRSPRRSRSGSQKRTHSRVRSHSWKRNHSRARSRTRKGILSQMGRHSQSRSHSKGKS 340

Query: 240 QKRGSSSRSKSPASVDRQRSRSRSRSRSVDS 270
           Q +  + R     +  R  S+ RS S S  S
Sbjct: 341 QNQSRTPRRGRSHNWSRNPSKERSHSHSRSS 371



 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 21/110 (19%)

Query: 181 KRHSRSRSRSRSRTRSSSRSRSRSRSRSRK---------SYSRSRSRSRSRSR------- 224
           K ++++ +RSR ++ S SRS  RSRS S+K         S+ R+ SR+RSR+R       
Sbjct: 267 KSYNQASTRSRPQSHSQSRSPRRSRSGSQKRTHSRVRSHSWKRNHSRARSRTRKGILSQM 326

Query: 225 -----SKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVD 269
                S+S S  +S    ++ +RG S       S +R  S SRS S+  D
Sbjct: 327 GRHSQSRSHSKGKSQNQSRTPRRGRSHNWSRNPSKERSHSHSRSSSKERD 376



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 59/216 (27%), Positives = 92/216 (42%), Gaps = 24/216 (11%)

Query: 56  ELDGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENL 115
           E D  +L S     +H R+RS     + R S   SS + R+ RR+  P +   R      
Sbjct: 482 ERDHSQLGSPSKERDHRRSRSPSKERQCRQSR--SSSKERDHRRSRSPSKERQR---RQS 536

Query: 116 SSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIK 175
            S    +D       + E     +  P        + S             KE   R+ +
Sbjct: 537 RSPNKERDRSQSRSPSEEREHRQSRSPSKERDRRRWRS-----------PSKERERRQSR 585

Query: 176 LIEGSKRHSRSRSRSR----SRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVS 231
                + HSRSRS ++    SR R+SS+ ++ SRSR+    S+  + S+SR+ SK    S
Sbjct: 586 SSSEERDHSRSRSPNKQSGYSRPRASSKEKAHSRSRTP---SKEGNHSQSRTSSKESDPS 642

Query: 232 RSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRS 267
           +S VP     + S +R+ S  S +R  S++ S S S
Sbjct: 643 QSTVPRSPDWKRSPTRTSS-LSQNRTPSKTSSHSPS 677



 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 5/91 (5%)

Query: 180 SKRHSRSRSRSRSRTRSSSRSRSRSRSRS---RKSYSRSRSRSRSRSRSKSRSVSRSPVP 236
           S+  S +++ +RSR +S S+SRS  RSRS   ++++SR RS S  R+ S++RS +R  + 
Sbjct: 264 SRVKSYNQASTRSRPQSHSQSRSPRRSRSGSQKRTHSRVRSHSWKRNHSRARSRTRKGIL 323

Query: 237 EKSQKRGSSSRSKSPASVDRQRSRSRSRSRS 267
            +   R S SRS S      Q SR+  R RS
Sbjct: 324 SQ-MGRHSQSRSHSKGKSQNQ-SRTPRRGRS 352



 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 15/118 (12%)

Query: 165 SGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKS----------YSR 214
           S K       K    ++  SRSR RS++RT S   + +R+   S+ S          +SR
Sbjct: 61  SSKSTKSTSTKRAPSNRPSSRSRVRSKARTPSRVSTDTRTSKASKASDVRCHQRRGTHSR 120

Query: 215 SRSRSRSRSRSKSRSVSRSPVPEKSQKRGS----SSRSKSPASVDR-QRSRSRSRSRS 267
            R+  R  SRS  RS SR+  P + +  G+    +SR ++P S  +  R +S  R R+
Sbjct: 121 GRTPGRRGSRSSKRSPSRASTPGRIRTHGARPGMASRVRTPTSQQKGSRGKSYGRPRT 178



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 36/81 (44%), Positives = 47/81 (58%), Gaps = 13/81 (16%)

Query: 186 SRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSS 245
           SR +S S T  SSR          KSY+++ +RSR +S S+SRS  RS     SQKR + 
Sbjct: 252 SREKSYSPTEMSSRV---------KSYNQASTRSRPQSHSQSRSPRRSR--SGSQKR-TH 299

Query: 246 SRSKSPASVDRQRSRSRSRSR 266
           SR +S  S  R  SR+RSR+R
Sbjct: 300 SRVRSH-SWKRNHSRARSRTR 319



 Score = 35.4 bits (80), Expect = 0.053
 Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 21/109 (19%)

Query: 177 IEGSKRHSRSRSRSRSRTRSSSRS-RSRSRSRSRKSYSRSRSRS-RSRSRSKSRSVSRSP 234
           ++ +K  + +RS   ++  +S  S  S S S+S KS S  R+ S R  SRS+ RS +R+P
Sbjct: 32  LKSTKSATPNRSLVPTKPATSRNSVMSPSSSKSTKSTSTKRAPSNRPSSRSRVRSKARTP 91

Query: 235 VPEKS----------------QKRGSSSRSKSPASVDRQRSRSRSRSRS 267
               +                Q+RG+ SR ++P    R+ SRS  RS S
Sbjct: 92  SRVSTDTRTSKASKASDVRCHQRRGTHSRGRTPG---RRGSRSSKRSPS 137



 Score = 35.4 bits (80), Expect = 0.053
 Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 4/100 (4%)

Query: 172 RKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVS 231
           R  K  + S      R  + SR R+  R  SRS   S++S SR+ +  R R+      ++
Sbjct: 99  RTSKASKASDVRCHQRRGTHSRGRTPGRRGSRS---SKRSPSRASTPGRIRTHGARPGMA 155

Query: 232 RSPVPEKSQKRGSSSRSKS-PASVDRQRSRSRSRSRSVDS 270
                  SQ++GS  +S   P + +R+RS S+ R+ S  S
Sbjct: 156 SRVRTPTSQQKGSRGKSYGRPRTSNRERSDSQPRNLSKKS 195


>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
           [Homo sapiens]
          Length = 624

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 44/92 (47%), Positives = 54/92 (58%), Gaps = 12/92 (13%)

Query: 178 EGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPE 237
           E  K + R   RSRS TRS SRS S+S SR ++S S+ RSRS +RSRS+ +   RS  P 
Sbjct: 296 ESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPH 355

Query: 238 KSQKRGSSSRSKSPASVDRQRSRSRSRSRSVD 269
           K        RSKS     R+R +SRSRS S D
Sbjct: 356 K-------KRSKS-----RERRKSRSRSHSRD 375



 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 64/281 (22%), Positives = 111/281 (39%), Gaps = 63/281 (22%)

Query: 6   VFIGRLNPAAREKD-VERFFKGYGRIRDIDLKRG------FGFVEFEDPRDADDAVYELD 58
           V++G LN      D +  FFK  G ++ + +         F FVEF D      A+   +
Sbjct: 184 VYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL-AFN 242

Query: 59  GKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSR 118
           G       + I H+                       N+    PP           ++ +
Sbjct: 243 GVMFGDRPLKINHS-----------------------NNAIVKPP----------EMTPQ 269

Query: 119 VSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE 178
            + ++L++ M++  E            +  +  A   +   + E+  G+  +  + K   
Sbjct: 270 AAAKELEEVMKRVREA-----------QSFISAAIEPESGKSNERKGGRSRSHTRSKSRS 318

Query: 179 GSKRHSR---------SRSRSRSRTRSSSRSRSRSRSRSR-KSYSRSRSRSRSRSRSKSR 228
            SK HSR         SRS +RSR+R   R RS+S  + R KS  R +SRSRS SR K R
Sbjct: 319 SSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRERRKSRSRSHSRDK-R 377

Query: 229 SVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVD 269
             +R  + EK + +      +     +R++ + R +++  D
Sbjct: 378 KDTREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRD 418



 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 60/225 (26%), Positives = 87/225 (38%), Gaps = 37/225 (16%)

Query: 73  RARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAG 132
           R+RS   R R R  DR  S+ P   R  +     E R       SR   +D ++ +++  
Sbjct: 334 RSRSHN-RSRSRQKDRRRSKSPHKKRSKS----RERRKSRSRSHSRDKRKDTREKIKEKE 388

Query: 133 EVTFADAH----RPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRS 188
            V   D      R K  E   E     D     EK   +E +  K +  E  K H + R 
Sbjct: 389 RVKEKDREKEREREKEREKEKERGKNKDRDKEREK--DREKDKEKDREREREKEHEKDRD 446

Query: 189 RSRSRTRSSSRSRSRSRSR---------------------SRKSYSRSRSRSRSRSRSKS 227
           + + + +   + R + RS+                     SR+S S SR R R RSRS S
Sbjct: 447 KEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSS 506

Query: 228 RSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRS-----RSRSRS 267
           RS   S   ++   R  S RS++     R++ R      R R RS
Sbjct: 507 RSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRERERS 551



 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 50/187 (26%), Positives = 76/187 (40%), Gaps = 8/187 (4%)

Query: 71  HARARSRGGRGRGRYSDRFSSR-----RPRNDRRNAPPVRTENRLIVENLSSRVSWQDLK 125
           H+R + +  R + +  +R   +     R R   R     R +N+   +           K
Sbjct: 372 HSRDKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRDKEREKDREKDKEK 431

Query: 126 DFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSR 185
           D  R+  +    D  + K  E   E     D    I++   K+   R       + R SR
Sbjct: 432 DREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSR 491

Query: 186 S--RSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRG 243
           S  R R R R+RSSSRS   S++  RKS SRS S      + K R   R  + E+ ++  
Sbjct: 492 SSSRERRRRRSRSSSRSPRTSKTIKRKS-SRSPSPRSRNKKDKKREKERDHISERRERER 550

Query: 244 SSSRSKS 250
           S+S  KS
Sbjct: 551 STSMRKS 557



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 12/118 (10%)

Query: 156 DLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSR-SRTRSSSRSRSRSRSRSRKSYSR 214
           D +   EK   KEI+ ++ K  + S+   RS + SR SR+ S  R R RS         R
Sbjct: 454 DKEKEREKDRSKEIDEKR-KKDKKSRTPPRSYNASRRSRSSSRERRRRRS---------R 503

Query: 215 SRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN 272
           S SRS   S++  R  SRSP P +S+ +    R K    +  +R R RS S    S +
Sbjct: 504 SSSRSPRTSKTIKRKSSRSPSP-RSRNKKDKKREKERDHISERRERERSTSMRKSSND 560



 Score = 34.7 bits (78), Expect = 0.091
 Identities = 36/103 (34%), Positives = 48/103 (46%), Gaps = 17/103 (16%)

Query: 178 EGSKRHSRSRSR--SRSRT--RSSSRSRSRSRSRSRKSYSR-------SRSRSRSRSRSK 226
           E  +R SRS SR    S+T  R SSRS S  RSR++K   R       S  R R RS S 
Sbjct: 496 ERRRRRSRSSSRSPRTSKTIKRKSSRSPS-PRSRNKKDKKREKERDHISERRERERSTSM 554

Query: 227 SRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVD 269
            +S +     EK +K  +S + K     +  +    S S+ VD
Sbjct: 555 RKSSNDRDGKEKLEKNSTSLKEK-----EHNKEPDSSVSKEVD 592


>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
           [Homo sapiens]
          Length = 508

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 44/92 (47%), Positives = 54/92 (58%), Gaps = 12/92 (13%)

Query: 178 EGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPE 237
           E  K + R   RSRS TRS SRS S+S SR ++S S+ RSRS +RSRS+ +   RS  P 
Sbjct: 180 ESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPH 239

Query: 238 KSQKRGSSSRSKSPASVDRQRSRSRSRSRSVD 269
           K        RSKS     R+R +SRSRS S D
Sbjct: 240 K-------KRSKS-----RERRKSRSRSHSRD 259



 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 64/281 (22%), Positives = 111/281 (39%), Gaps = 63/281 (22%)

Query: 6   VFIGRLNPAAREKD-VERFFKGYGRIRDIDLKRG------FGFVEFEDPRDADDAVYELD 58
           V++G LN      D +  FFK  G ++ + +         F FVEF D      A+   +
Sbjct: 68  VYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL-AFN 126

Query: 59  GKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSR 118
           G       + I H+                       N+    PP           ++ +
Sbjct: 127 GVMFGDRPLKINHS-----------------------NNAIVKPP----------EMTPQ 153

Query: 119 VSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIE 178
            + ++L++ M++  E            +  +  A   +   + E+  G+  +  + K   
Sbjct: 154 AAAKELEEVMKRVREA-----------QSFISAAIEPESGKSNERKGGRSRSHTRSKSRS 202

Query: 179 GSKRHSR---------SRSRSRSRTRSSSRSRSRSRSRSR-KSYSRSRSRSRSRSRSKSR 228
            SK HSR         SRS +RSR+R   R RS+S  + R KS  R +SRSRS SR K R
Sbjct: 203 SSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRERRKSRSRSHSRDK-R 261

Query: 229 SVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVD 269
             +R  + EK + +      +     +R++ + R +++  D
Sbjct: 262 KDTREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRD 302



 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 60/225 (26%), Positives = 87/225 (38%), Gaps = 37/225 (16%)

Query: 73  RARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAG 132
           R+RS   R R R  DR  S+ P   R  +     E R       SR   +D ++ +++  
Sbjct: 218 RSRSHN-RSRSRQKDRRRSKSPHKKRSKS----RERRKSRSRSHSRDKRKDTREKIKEKE 272

Query: 133 EVTFADAH----RPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRS 188
            V   D      R K  E   E     D     EK   +E +  K +  E  K H + R 
Sbjct: 273 RVKEKDREKEREREKEREKEKERGKNKDRDKEREK--DREKDKEKDREREREKEHEKDRD 330

Query: 189 RSRSRTRSSSRSRSRSRSR---------------------SRKSYSRSRSRSRSRSRSKS 227
           + + + +   + R + RS+                     SR+S S SR R R RSRS S
Sbjct: 331 KEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSS 390

Query: 228 RSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRS-----RSRSRS 267
           RS   S   ++   R  S RS++     R++ R      R R RS
Sbjct: 391 RSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRERERS 435



 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 50/187 (26%), Positives = 76/187 (40%), Gaps = 8/187 (4%)

Query: 71  HARARSRGGRGRGRYSDRFSSR-----RPRNDRRNAPPVRTENRLIVENLSSRVSWQDLK 125
           H+R + +  R + +  +R   +     R R   R     R +N+   +           K
Sbjct: 256 HSRDKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRDKEREKDREKDKEK 315

Query: 126 DFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSR 185
           D  R+  +    D  + K  E   E     D    I++   K+   R       + R SR
Sbjct: 316 DREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSR 375

Query: 186 S--RSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRG 243
           S  R R R R+RSSSRS   S++  RKS SRS S      + K R   R  + E+ ++  
Sbjct: 376 SSSRERRRRRSRSSSRSPRTSKTIKRKS-SRSPSPRSRNKKDKKREKERDHISERRERER 434

Query: 244 SSSRSKS 250
           S+S  KS
Sbjct: 435 STSMRKS 441



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 12/118 (10%)

Query: 156 DLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSR-SRTRSSSRSRSRSRSRSRKSYSR 214
           D +   EK   KEI+ ++ K  + S+   RS + SR SR+ S  R R RS         R
Sbjct: 338 DKEKEREKDRSKEIDEKR-KKDKKSRTPPRSYNASRRSRSSSRERRRRRS---------R 387

Query: 215 SRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN 272
           S SRS   S++  R  SRSP P +S+ +    R K    +  +R R RS S    S +
Sbjct: 388 SSSRSPRTSKTIKRKSSRSPSP-RSRNKKDKKREKERDHISERRERERSTSMRKSSND 444



 Score = 34.7 bits (78), Expect = 0.091
 Identities = 36/103 (34%), Positives = 48/103 (46%), Gaps = 17/103 (16%)

Query: 178 EGSKRHSRSRSR--SRSRT--RSSSRSRSRSRSRSRKSYSR-------SRSRSRSRSRSK 226
           E  +R SRS SR    S+T  R SSRS S  RSR++K   R       S  R R RS S 
Sbjct: 380 ERRRRRSRSSSRSPRTSKTIKRKSSRSPS-PRSRNKKDKKREKERDHISERRERERSTSM 438

Query: 227 SRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVD 269
            +S +     EK +K  +S + K     +  +    S S+ VD
Sbjct: 439 RKSSNDRDGKEKLEKNSTSLKEK-----EHNKEPDSSVSKEVD 476


>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
           sapiens]
          Length = 674

 Score = 68.9 bits (167), Expect = 4e-12
 Identities = 50/103 (48%), Positives = 60/103 (58%), Gaps = 15/103 (14%)

Query: 180 SKRHSRSRSRSRSRTRSSSRSRSRSRSRSRK----------SYSRSRSR-----SRSRSR 224
           S RH+RSRSRS SR+RS SR  SRSRSR R+           YSRS +R      R RSR
Sbjct: 411 SGRHARSRSRSWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRSPARRGGYGPRRRSR 470

Query: 225 SKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRS 267
           S+S S  R     +  +  SSSRS+S  S+   RSRS +RSRS
Sbjct: 471 SRSHSGDRYRRGGRGLRHHSSSRSRSSWSLSPSRSRSLTRSRS 513



 Score = 58.5 bits (140), Expect = 6e-09
 Identities = 48/101 (47%), Positives = 53/101 (52%), Gaps = 13/101 (12%)

Query: 180 SKRHSRSRSRSRSRTR-SSSRSRSRSRSRSRK------------SYSRSRSRSRSRSRSK 226
           ++R S S S S S +R SSSRS SRS SRSR+            S SRS SRSRSRSR  
Sbjct: 373 ARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSRSWSRSRSRSRRY 432

Query: 227 SRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRS 267
           SRS SR         R     S+SPA       R RSRSRS
Sbjct: 433 SRSRSRGRRHSGGGSRDGHRYSRSPARRGGYGPRRRSRSRS 473



 Score = 58.2 bits (139), Expect = 8e-09
 Identities = 45/109 (41%), Positives = 57/109 (52%), Gaps = 10/109 (9%)

Query: 166 GKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRS---------RSRSRSRKSYSRSR 216
           G+  + R+      S   +   S SRS +RSSSRSR           +RSRSR S+SRSR
Sbjct: 368 GRNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSR-SWSRSR 426

Query: 217 SRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRS 265
           SRSR  SRS+SR    S    +   R S S ++      R+RSRSRS S
Sbjct: 427 SRSRRYSRSRSRGRRHSGGGSRDGHRYSRSPARRGGYGPRRRSRSRSHS 475



 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 37/67 (55%), Positives = 46/67 (68%), Gaps = 4/67 (5%)

Query: 179 GSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEK 238
           G + HS SRSRS S + S SRSRS +RSRS   +S S S+SRSRSRS+S+S S SP  EK
Sbjct: 485 GLRHHSSSRSRS-SWSLSPSRSRSLTRSRS---HSPSPSQSRSRSRSRSQSPSPSPAREK 540

Query: 239 SQKRGSS 245
             +  +S
Sbjct: 541 LTRPAAS 547



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 36/112 (32%), Positives = 49/112 (43%), Gaps = 12/112 (10%)

Query: 137 ADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRS 196
           AD ++     G+ +    GD    + K   +    +  K +E  K     R RSR + R 
Sbjct: 219 ADLNKQATTYGMAD----GDFVRMLRKDKEEAEAIKHAKALEEEKAMYSGR-RSRRQRRE 273

Query: 197 SSRSRSRSRSRSRKSYSRSRS-------RSRSRSRSKSRSVSRSPVPEKSQK 241
               R R R  S  SY+R  S       RS S S S+SRS SRSP P + +K
Sbjct: 274 FREKRLRGRKISPPSYARRDSPTYDPYKRSPSESSSESRSRSRSPTPGREEK 325



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 51/176 (28%), Positives = 76/176 (43%), Gaps = 30/176 (17%)

Query: 123 DLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKE--INGRKIKLIEGS 180
           D    +R+  E   A  H   L E   E A Y   ++  ++   +E  + GRKI     +
Sbjct: 234 DFVRMLRKDKEEAEAIKHAKALEE---EKAMYSGRRSRRQRREFREKRLRGRKISPPSYA 290

Query: 181 KRHSRSRS---RSRSRTRSSSRSRSRSRSRSRK-------SYSRSRSRSRSRSRSKSRS- 229
           +R S +     RS S + S SRSRSRS +  R+       S+  S   + + + + + S 
Sbjct: 291 RRDSPTYDPYKRSPSESSSESRSRSRSPTPGREEKITFITSFGGSDEEAAAAAAAAAASG 350

Query: 230 --VSRSPVPEK-----------SQKRGSSSRSKSPAS-VDRQRSRSRSRSRSVDSG 271
               + P P +           +++R SSS S S AS     RS SRS SRS   G
Sbjct: 351 VTTGKPPAPPQPGGPAPGRNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGG 406



 Score = 39.7 bits (91), Expect = 0.003
 Identities = 52/205 (25%), Positives = 77/205 (37%), Gaps = 15/205 (7%)

Query: 72  ARARSRGG---RGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFM 128
           +R+RS  G   R  GR     SS R R+    +P   + +R +  + S   S    +   
Sbjct: 469 SRSRSHSGDRYRRGGRGLRHHSSSRSRSSWSLSP---SRSRSLTRSRSHSPSPSQSRSRS 525

Query: 129 RQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSK---RHSR 185
           R   +       R KL       A    LK   E  +GKE    K KL    K   R  +
Sbjct: 526 RSRSQSPSPSPAREKLTRPAASPAVGEKLKKT-EPAAGKETGAAKPKLTPQEKLKLRMQK 584

Query: 186 SRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSS 245
           + +R     + +++ +   +   R+           + R K R        E  ++    
Sbjct: 585 ALNRQFKADKKAAQEKMIQQEHERQEREDELRAMARKIRMKERERREKEREEWERQYSRQ 644

Query: 246 SRSKSPA-----SVDRQRSRSRSRS 265
           SRS SP      S  R+RSRSRSRS
Sbjct: 645 SRSPSPRYSREYSSSRRRSRSRSRS 669



 Score = 36.6 bits (83), Expect = 0.024
 Identities = 47/171 (27%), Positives = 65/171 (38%), Gaps = 13/171 (7%)

Query: 74  ARSRG-GRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAG 132
           +RSR   R R        SR     R  +P        +    +S    + LK     AG
Sbjct: 503 SRSRSLTRSRSHSPSPSQSRSRSRSRSQSPSPSPAREKLTRPAASPAVGEKLKKTEPAAG 562

Query: 133 EVTFADAHRPKLN---------EGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRH 183
           + T   A +PKL          +  +      D K A EK+  +E + R+ +  E     
Sbjct: 563 KET--GAAKPKLTPQEKLKLRMQKALNRQFKADKKAAQEKMIQQE-HERQEREDELRAMA 619

Query: 184 SRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSP 234
            + R + R R         R  SR  +S S   SR  S SR +SRS SRSP
Sbjct: 620 RKIRMKERERREKEREEWERQYSRQSRSPSPRYSREYSSSRRRSRSRSRSP 670



 Score = 34.3 bits (77), Expect = 0.12
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 156 DLKNAIEKLSGKEINGRKIKLIEGSKRHSR-SRSRSRSRTRSSSRSRSRSRSRSRKSYSR 214
           +L+    K+  KE   R+ +  E  +++SR SRS S   +R  S SR RSRSRSR  + R
Sbjct: 614 ELRAMARKIRMKERERREKEREEWERQYSRQSRSPSPRYSREYSSSRRRSRSRSRSPHYR 673


>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
          Length = 1462

 Score = 68.2 bits (165), Expect = 7e-12
 Identities = 50/103 (48%), Positives = 60/103 (58%), Gaps = 15/103 (14%)

Query: 180  SKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSR-----SRSKSRSVSRSP 234
            S+  S+S ++SR RTRS S S SRSRSRS  S  RSRS SRSR     SR ++RS S S 
Sbjct: 1315 SRSRSKSETKSRHRTRSVSYSHSRSRSRSSTSSYRSRSYSRSRSRGWYSRGRTRSRSSSY 1374

Query: 235  VPEKSQKRGSSSRSKSPA----------SVDRQRSRSRSRSRS 267
               KS +  S SRS+S +          + D   SRSRSRSRS
Sbjct: 1375 RSYKSHRTSSRSRSRSSSYDPHSRSRSYTYDSYYSRSRSRSRS 1417



 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 45/87 (51%), Positives = 55/87 (63%), Gaps = 2/87 (2%)

Query: 182  RHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRS-KSRSVSRSPVPEKSQ 240
            R   S+SRS SR+RS S ++SR R+RS  SYS SRSRSRS + S +SRS SRS       
Sbjct: 1305 RDDDSQSRSPSRSRSKSETKSRHRTRS-VSYSHSRSRSRSSTSSYRSRSYSRSRSRGWYS 1363

Query: 241  KRGSSSRSKSPASVDRQRSRSRSRSRS 267
            +  + SRS S  S    R+ SRSRSRS
Sbjct: 1364 RGRTRSRSSSYRSYKSHRTSSRSRSRS 1390



 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 43/95 (45%), Positives = 55/95 (57%), Gaps = 4/95 (4%)

Query: 172  RKIKLIEGSKRHSRSRSRSRSRTRSS-SRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSV 230
            RK   +    R+  S S  ++ +R   S+SRS SRSRS KS ++SR R+RS S S SRS 
Sbjct: 1282 RKTARLNRRPRNQESSSDEQTPSRDDDSQSRSPSRSRS-KSETKSRHRTRSVSYSHSRSR 1340

Query: 231  SRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRS 265
            SRS     S +  S SRS+S     R R+RSRS S
Sbjct: 1341 SRSST--SSYRSRSYSRSRSRGWYSRGRTRSRSSS 1373



 Score = 51.2 bits (121), Expect = 9e-07
 Identities = 45/94 (47%), Positives = 51/94 (54%), Gaps = 8/94 (8%)

Query: 181  KRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKS---RSVSRSPVPE 237
            +  S SRSRSR      SR R+RSRS S +SY   R+ SRSRSRS S    S SRS   +
Sbjct: 1349 RSRSYSRSRSRG---WYSRGRTRSRSSSYRSYKSHRTSSRSRSRSSSYDPHSRSRSYTYD 1405

Query: 238  KSQKRGSSSRSKSPASVDRQRSRS-RSRSRSVDS 270
                R S SRS+S  S    R RS   RSRS  S
Sbjct: 1406 SYYSR-SRSRSRSQRSDSYHRGRSYNRRSRSCRS 1438



 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 45/86 (52%), Positives = 54/86 (62%), Gaps = 6/86 (6%)

Query: 180 SKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKS 239
           S R S S  RSRSR   SSRSRS SRS +R S S + S SRSRS S SRS SR+   + S
Sbjct: 682 SDRSSESSPRSRSR---SSRSRSYSRSYTR-SRSLASSHSRSRSPS-SRSHSRNKYSDHS 736

Query: 240 QKRGSSSRSKSPASVDRQRSRSRSRS 265
           Q   SSS + S +S D +R++ R RS
Sbjct: 737 QCSRSSSYT-SISSDDGRRAKRRLRS 761



 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 10/92 (10%)

Query: 176  LIEGSKRHSRSRSRSRSRTRSSS-RSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSP 234
            L +  ++ +R   R R++  SS  ++ SR      +S SRSRS+S ++SR ++RSVS S 
Sbjct: 1277 LFDEVRKTARLNRRPRNQESSSDEQTPSRDDDSQSRSPSRSRSKSETKSRHRTRSVSYS- 1335

Query: 235  VPEKSQKRGSSSRSKSPASVDRQRSRSRSRSR 266
                     S SRS+S  S  R RS SRSRSR
Sbjct: 1336 --------HSRSRSRSSTSSYRSRSYSRSRSR 1359



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 37/104 (35%), Positives = 49/104 (47%), Gaps = 3/104 (2%)

Query: 167 KEINGRKIKL---IEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRS 223
           K+   R+I +   IE SK  +R    S  R RSS  S   S   S++ +S+S    +S  
Sbjct: 452 KQTKKRRILIPSDIESSKSSTRRMKSSCDRERSSRSSSLSSHHSSKRDWSKSDKDVQSSL 511

Query: 224 RSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRS 267
              SR   RS    +S  RGSS    +  S    RSRS+SRS S
Sbjct: 512 THSSRDSYRSKSHSQSYSRGSSRSRTASKSSSHSRSRSKSRSSS 555



 Score = 49.7 bits (117), Expect = 3e-06
 Identities = 36/95 (37%), Positives = 48/95 (50%), Gaps = 2/95 (2%)

Query: 165 SGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSR 224
           S K    +  K ++ S  HS SR   RS++ S S SR  SRSR+  S S S SRSRS+SR
Sbjct: 495 SSKRDWSKSDKDVQSSLTHS-SRDSYRSKSHSQSYSRGSSRSRTA-SKSSSHSRSRSKSR 552

Query: 225 SKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRS 259
           S S+S  R    +  +K  S      P   +  R+
Sbjct: 553 SSSKSGHRKRASKSPRKTASQLSENKPVKTEPLRA 587



 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 49/110 (44%), Positives = 53/110 (48%), Gaps = 27/110 (24%)

Query: 180  SKRHSRSRSR---SRSRTRS-------------SSRSRSRS-----RSRSR-----KSYS 213
            S+ +SRSRSR   SR RTRS             SSRSRSRS      SRSR       YS
Sbjct: 1350 SRSYSRSRSRGWYSRGRTRSRSSSYRSYKSHRTSSRSRSRSSSYDPHSRSRSYTYDSYYS 1409

Query: 214  RSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRS 263
            RSRSRSRS+ RS S    RS        R   S S+S  S    RS S S
Sbjct: 1410 RSRSRSRSQ-RSDSYHRGRSYNRRSRSCRSYGSDSESDRSYSHHRSPSES 1458



 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 3/89 (3%)

Query: 182 RHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSR---SRSKSRSVSRSPVPEK 238
           R SRSRS SRS TRS S + S SRSRS  S S SR++       SRS S +   S    +
Sbjct: 695 RSSRSRSYSRSYTRSRSLASSHSRSRSPSSRSHSRNKYSDHSQCSRSSSYTSISSDDGRR 754

Query: 239 SQKRGSSSRSKSPASVDRQRSRSRSRSRS 267
           +++R  SS  K+  S  +  S S     S
Sbjct: 755 AKRRLRSSGKKNSVSHKKHSSSSEKTLHS 783



 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 49/206 (23%), Positives = 78/206 (37%), Gaps = 26/206 (12%)

Query: 63  CSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQ 122
           CS R        RSR     G YSD  ++R   + ++     + +++             
Sbjct: 393 CSSRWDERSLSQRSRSWSYNGYYSDLSTARHSGHHKKRRKEKKVKHK------------- 439

Query: 123 DLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKR 182
                 ++  +      H+      ++  +     K++  ++       R  +    S  
Sbjct: 440 ------KKGKKQKHCRRHKQTKKRRILIPSDIESSKSSTRRMKSSCDRERSSRSSSLSSH 493

Query: 183 HSRSRSRSRS------RTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVP 236
           HS  R  S+S          SSR   RS+S S+ SYSR  SRSR+ S+S S S SRS   
Sbjct: 494 HSSKRDWSKSDKDVQSSLTHSSRDSYRSKSHSQ-SYSRGSSRSRTASKSSSHSRSRSKSR 552

Query: 237 EKSQKRGSSSRSKSPASVDRQRSRSR 262
             S+       SKSP     Q S ++
Sbjct: 553 SSSKSGHRKRASKSPRKTASQLSENK 578



 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 35/79 (44%), Positives = 43/79 (54%), Gaps = 8/79 (10%)

Query: 180  SKRHSRS-----RSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSP 234
            S+  SRS      SRSRS T  S  SRSRSRSRS++S S  R RS +R   +SRS     
Sbjct: 1384 SRSRSRSSSYDPHSRSRSYTYDSYYSRSRSRSRSQRSDSYHRGRSYNR---RSRSCRSYG 1440

Query: 235  VPEKSQKRGSSSRSKSPAS 253
               +S +  S  RS S +S
Sbjct: 1441 SDSESDRSYSHHRSPSESS 1459



 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 38/99 (38%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 174 IKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRS 233
           IK    S  + +    S S   + S+   RS   S +S SRS SRSRS SRS +RS S +
Sbjct: 655 IKETGSSSSYHKREKNSESDQSTYSKYSDRSSESSPRSRSRS-SRSRSYSRSYTRSRSLA 713

Query: 234 PVPEKSQKRGSSSRSKSPASVDRQRSRSRS-RSRSVDSG 271
               +S+   S S S++  S   Q SRS S  S S D G
Sbjct: 714 SSHSRSRSPSSRSHSRNKYSDHSQCSRSSSYTSISSDDG 752



 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 9/99 (9%)

Query: 178  EGSKRHSRSRSRSR-----SRTRSSSRSRSRSRSRSRKSYSRSRSR---SRSRSRSKSRS 229
            +G +   +S+++ R        R ++R   R R++   S  ++ SR   S+SRS S+SRS
Sbjct: 1260 QGLRIEIKSKNKVRPGSLFDEVRKTARLNRRPRNQESSSDEQTPSRDDDSQSRSPSRSRS 1319

Query: 230  VSRSPVPEKSQKRG-SSSRSKSPASVDRQRSRSRSRSRS 267
             S +    +++    S SRS+S +S    RSRS SRSRS
Sbjct: 1320 KSETKSRHRTRSVSYSHSRSRSRSSTSSYRSRSYSRSRS 1358



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 5/99 (5%)

Query: 170 NGRKIK--LIEGSKRHS---RSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSR 224
           +GR+ K  L    K++S   +  S S  +T  S   + R RS   + YS SRS     S 
Sbjct: 751 DGRRAKRRLRSSGKKNSVSHKKHSSSSEKTLHSKYVKGRDRSSCVRKYSESRSSLDYSSD 810

Query: 225 SKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRS 263
           S+  SV  +   ++ +K+G   R+ +    +R   +S+S
Sbjct: 811 SEQSSVQATQSAQEKEKQGQMERTHNKQEKNRGEEKSKS 849



 Score = 38.1 bits (87), Expect = 0.008
 Identities = 35/99 (35%), Positives = 46/99 (46%), Gaps = 15/99 (15%)

Query: 180 SKRHSRSRSRSRSRTRS-SSRSRSRSRSRSRKSYSRS------------RSRSRSRSRSK 226
           S   SRS + S SR+RS SSRS SR++       SRS            R++ R RS  K
Sbjct: 705 SYTRSRSLASSHSRSRSPSSRSHSRNKYSDHSQCSRSSSYTSISSDDGRRAKRRLRSSGK 764

Query: 227 SRSVSRSPVPEKSQKRGSSS--RSKSPASVDRQRSRSRS 263
             SVS       S+K   S   + +  +S  R+ S SRS
Sbjct: 765 KNSVSHKKHSSSSEKTLHSKYVKGRDRSSCVRKYSESRS 803



 Score = 37.4 bits (85), Expect = 0.014
 Identities = 32/85 (37%), Positives = 40/85 (47%), Gaps = 19/85 (22%)

Query: 186  SRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSS 245
            +R   R R + SS S  ++ SR   S SRS SRSRS+S +KSR  +RS            
Sbjct: 1285 ARLNRRPRNQESS-SDEQTPSRDDDSQSRSPSRSRSKSETKSRHRTRS------------ 1331

Query: 246  SRSKSPASVDRQRSRSRSRSRSVDS 270
                   S    RSRSRS + S  S
Sbjct: 1332 ------VSYSHSRSRSRSSTSSYRS 1350



 Score = 35.4 bits (80), Expect = 0.053
 Identities = 29/56 (51%), Positives = 33/56 (58%), Gaps = 8/56 (14%)

Query: 183  HSRSRSRSRSRTRSSSRSRSRS---RSRSRKSYSRS----RSRSRSRSRSKSRSVS 231
            +SRSRSRSRS+ RS S  R RS   RSRS +SY       RS S  RS S+S   S
Sbjct: 1408 YSRSRSRSRSQ-RSDSYHRGRSYNRRSRSCRSYGSDSESDRSYSHHRSPSESSRYS 1462



 Score = 34.3 bits (77), Expect = 0.12
 Identities = 39/120 (32%), Positives = 51/120 (42%), Gaps = 11/120 (9%)

Query: 154 YGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYS 213
           Y DL  A  + SG     RK K ++  K+  + +   R +     R    S   S KS +
Sbjct: 415 YSDLSTA--RHSGHHKKRRKEKKVKHKKKGKKQKHCRRHKQTKKRRILIPSDIESSKSST 472

Query: 214 RSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSK------SPASVDRQRSRSRSRSRS 267
           R    S  R RS SRS S S     S KR  S   K      + +S D  RS+S S+S S
Sbjct: 473 RRMKSSCDRERS-SRSSSLSS--HHSSKRDWSKSDKDVQSSLTHSSRDSYRSKSHSQSYS 529



 Score = 33.9 bits (76), Expect = 0.16
 Identities = 34/89 (38%), Positives = 41/89 (46%), Gaps = 19/89 (21%)

Query: 184 SRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRG 243
           S S  +    + S   + S+   RS +S  RSRSRS SRSRS SRS +RS          
Sbjct: 661 SSSYHKREKNSESDQSTYSKYSDRSSESSPRSRSRS-SRSRSYSRSYTRS---------- 709

Query: 244 SSSRSKSPASVDRQRSRSRSRSRSVDSGN 272
                +S AS     SRSRS S    S N
Sbjct: 710 -----RSLAS---SHSRSRSPSSRSHSRN 730



 Score = 33.1 bits (74), Expect = 0.27
 Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 184 SRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQK-R 242
           S S S S S + SSS S        R+ + R     RS+ R K  S S  P  + +   +
Sbjct: 198 SDSSSNSSSSSESSSESELEHERSRRRKHKRRPKVKRSKKRRKEASSSEEPRNKHAMNPK 257

Query: 243 GSSSRS--KSPASVDRQRSRSR 262
           G S RS      SVD    R +
Sbjct: 258 GHSERSDTNEKRSVDSSAKREK 279



 Score = 32.3 bits (72), Expect = 0.45
 Identities = 25/87 (28%), Positives = 31/87 (35%), Gaps = 1/87 (1%)

Query: 185 RSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGS 244
           + R +      S S S S S S S         RSR R   +   V RS    K      
Sbjct: 187 KKRKKPTHSEGSDSSSNSSSSSESSSESELEHERSRRRKHKRRPKVKRSKKRRKEASSSE 246

Query: 245 SSRSKSPASVDRQRSRS-RSRSRSVDS 270
             R+K   +      RS  +  RSVDS
Sbjct: 247 EPRNKHAMNPKGHSERSDTNEKRSVDS 273



 Score = 31.6 bits (70), Expect = 0.77
 Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 13/188 (6%)

Query: 84  RYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPK 143
           +YSDR S   PR+  R++   R+ +R    + S   S    +    ++        H   
Sbjct: 680 KYSDRSSESSPRSRSRSSRS-RSYSRSYTRSRSLASSHSRSRSPSSRSHSRNKYSDHSQC 738

Query: 144 LNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRS------RSRTRSS 197
                    S  D + A  +L     +G+K  +    K+HS S  ++      + R RSS
Sbjct: 739 SRSSSYTSISSDDGRRAKRRLRS---SGKKNSV--SHKKHSSSSEKTLHSKYVKGRDRSS 793

Query: 198 SRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQ 257
              R  S SRS   YS    +S  ++   ++   +    E++  +   +R +  +  +R+
Sbjct: 794 C-VRKYSESRSSLDYSSDSEQSSVQATQSAQEKEKQGQMERTHNKQEKNRGEEKSKSERE 852

Query: 258 RSRSRSRS 265
              S+ R+
Sbjct: 853 CPHSKKRT 860



 Score = 30.4 bits (67), Expect = 1.7
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 210 KSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVD 269
           K    S S  +    S+S   + S   ++S +  SS RS+S +S  R  SRS +RSRS+ 
Sbjct: 656 KETGSSSSYHKREKNSESDQSTYSKYSDRSSE--SSPRSRSRSSRSRSYSRSYTRSRSLA 713

Query: 270 SGN 272
           S +
Sbjct: 714 SSH 716



 Score = 30.0 bits (66), Expect = 2.2
 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 5/72 (6%)

Query: 178 EGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPE 237
           E    H RSR R   R     RS+ R +  S     R++     +  S+     RS   E
Sbjct: 213 ESELEHERSRRRKHKRRPKVKRSKKRRKEASSSEEPRNKHAMNPKGHSE-----RSDTNE 267

Query: 238 KSQKRGSSSRSK 249
           K     S+ R K
Sbjct: 268 KRSVDSSAKREK 279


>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
          Length = 288

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 51/118 (43%), Positives = 65/118 (55%), Gaps = 20/118 (16%)

Query: 153 SYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRS---RTRSSSRSRSRSRSRSR 209
           +YG+ ++     SG      K      S RH+ +RSRS+    R+RS SRSRS SRSRSR
Sbjct: 8   NYGERESRSASRSGSAHGSGK------SARHTPARSRSKEDSRRSRSKSRSRSESRSRSR 61

Query: 210 KS----YSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRS 263
           +S    Y+RSRSRSRS  RS+SRS SR         R   S S SP S  R+   +R+
Sbjct: 62  RSSRRHYTRSRSRSRSHRRSRSRSYSR-------DYRRRHSHSHSPMSTRRRHVGNRA 112



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 37/88 (42%), Positives = 47/88 (53%), Gaps = 24/88 (27%)

Query: 181 KRHSRSRSRSRSRTRSSSRSR-SRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKS 239
           +R SRS SRS S   S   +R + +RSRS++   RSRS+SRSRS S+SRS          
Sbjct: 11  ERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRS---------- 60

Query: 240 QKRGSSSRSKSPASVDRQRSRSRSRSRS 267
             R SS           +R  +RSRSRS
Sbjct: 61  --RRSS-----------RRHYTRSRSRS 75



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 10/103 (9%)

Query: 4   CRVFIGRLNPAAREKDVERFFKGYGRIRDIDL--------KRGFGFVEFEDPRDADDAVY 55
           C + +  L+    E+D+   F  YG I D+ +         RGF FV FE+  DA +A  
Sbjct: 118 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKE 177

Query: 56  ELDGKELCSERVTIEHARARSRGGRGRGRYSDR--FSSRRPRN 96
             +G EL   R+ ++ +  +       G Y  R  + S R R+
Sbjct: 178 RANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRD 220



 Score = 36.2 bits (82), Expect = 0.031
 Identities = 34/93 (36%), Positives = 44/93 (47%), Gaps = 24/93 (25%)

Query: 179 GSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEK 238
           G + +    SRS SR+ S+  S   +R    +S S+  SR   RSRSKSR          
Sbjct: 5   GEQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSR---RSRSKSR---------- 51

Query: 239 SQKRGSSSRSKSPA----SVDRQRSRSRSRSRS 267
                  SRS+S +    S  R  +RSRSRSRS
Sbjct: 52  -------SRSESRSRSRRSSRRHYTRSRSRSRS 77



 Score = 34.7 bits (78), Expect = 0.091
 Identities = 21/53 (39%), Positives = 30/53 (56%)

Query: 215 SRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRS 267
           S S  ++    +SRS SRS     S K    + ++S +  D +RSRS+SRSRS
Sbjct: 2   SDSGEQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRS 54



 Score = 33.5 bits (75), Expect = 0.20
 Identities = 22/57 (38%), Positives = 30/57 (52%)

Query: 211 SYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRS 267
           S S  ++     SRS SRS S     + ++   + SRSK  +   R +SRSRS SRS
Sbjct: 2   SDSGEQNYGERESRSASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRS 58


>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
          Length = 524

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 48/118 (40%), Positives = 63/118 (53%), Gaps = 5/118 (4%)

Query: 152 ASYGDLKNAIEKLSGKEINGRKIKLIEG-SKRHSRSRSRSRSRTRSSSRSRSRSRSRSRK 210
           A Y   +N +   +G E   +K K  +  S+ H R RS+S+ R RS  R R +S+SR RK
Sbjct: 13  APYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRERK 72

Query: 211 SYSRSRSRSRSRSRSKSRSV-SRSPVPEKSQKRGSSSRSK--SPASVDRQRSRSRSRS 265
             SRS+ R RSRSRS+ R    R   P    K  S+ R K   P S+   R RSRS+S
Sbjct: 73  R-SRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKLSRRRSRSKS 129



 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 27/111 (24%)

Query: 156 DLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRS 215
           D++  +E    K+ N  K+    G +  S+ R +S+SR+RS  R RS+S+ R R   SR 
Sbjct: 6   DIEAMLEAPYKKDEN--KLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKR---SRD 60

Query: 216 RSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSR 266
           R R +S+SR + RS S+                      +R+RSRSRSR R
Sbjct: 61  RERKKSKSRERKRSRSK----------------------ERRRSRSRSRDR 89



 Score = 42.7 bits (99), Expect = 3e-04
 Identities = 45/199 (22%), Positives = 86/199 (43%), Gaps = 30/199 (15%)

Query: 6   VFIGRLNPAAREKDVERFFKGYGRIRDIDL--------KRGFGFVEFEDPRDADDAVYEL 57
           VF  +L    R +D+E FF   G++RD+ +         +G  +VEF D      A+  L
Sbjct: 155 VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAI-GL 213

Query: 58  DGKELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSS 117
            G+ +    + ++ ++A            +R ++      + +A P+    RL V +L  
Sbjct: 214 TGQRVLGVPIIVQASQAE----------KNRAAAMANNLQKGSAGPM----RLYVGSLHF 259

Query: 118 RVSWQDLKDFMRQAGEVTF------ADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEING 171
            ++   L+      G +        ++  R K   G + F+     K A+E+L+G E+ G
Sbjct: 260 NITEDMLRGIFEPFGRIESIQLMMDSETGRSK-GYGFITFSDSECAKKALEQLNGFELAG 318

Query: 172 RKIKLIEGSKRHSRSRSRS 190
           R +K+   ++R   S + S
Sbjct: 319 RPMKVGHVTERTDASSASS 337



 Score = 40.8 bits (94), Expect = 0.001
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 8/80 (10%)

Query: 5   RVFIGRLNPAAREKDVERFFKGYGRIRDIDL--------KRGFGFVEFEDPRDADDAVYE 56
           R+++G L+    E  +   F+ +GRI  I L         +G+GF+ F D   A  A+ +
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310

Query: 57  LDGKELCSERVTIEHARARS 76
           L+G EL    + + H   R+
Sbjct: 311 LNGFELAGRPMKVGHVTERT 330



 Score = 36.6 bits (83), Expect = 0.024
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 21/79 (26%)

Query: 189 RSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRS 248
           +  ++  S++    RS+ R +KS SRSRS  R RS+SK R  SR                
Sbjct: 17  KDENKLSSANGHEERSKKR-KKSKSRSRSHERKRSKSKERKRSRDR-------------- 61

Query: 249 KSPASVDRQRSRSRSRSRS 267
                 +R++S+SR R RS
Sbjct: 62  ------ERKKSKSRERKRS 74


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.129    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,402,033
Number of Sequences: 37866
Number of extensions: 415255
Number of successful extensions: 15337
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 313
Number of HSP's that attempted gapping in prelim test: 3584
Number of HSP's gapped (non-prelim): 3944
length of query: 272
length of database: 18,247,518
effective HSP length: 101
effective length of query: 171
effective length of database: 14,423,052
effective search space: 2466341892
effective search space used: 2466341892
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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