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Search of human proteins with 84043956
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|84043956 distal-less homeobox 1 isoform 2 [Homo sapiens]
(129 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|84043956 distal-less homeobox 1 isoform 2 [Homo sapiens] 267 2e-72
gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens] 223 4e-59
gi|82659115 distal-less homeobox 6 [Homo sapiens] 70 5e-13
gi|197276670 spermatogenesis and centriole associated 1 isoform ... 41 2e-04
gi|197276668 spermatogenesis and centriole associated 1 isoform ... 41 2e-04
gi|194363771 sperm specific antigen 2 isoform 1 [Homo sapiens] 37 0.003
gi|28557788 sperm specific antigen 2 isoform 2 [Homo sapiens] 37 0.003
gi|153792012 DNA polymerase zeta [Homo sapiens] 34 0.037
gi|8923887 zinc finger protein 395 [Homo sapiens] 32 0.18
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 31 0.24
gi|113204609 zinc finger protein 750 [Homo sapiens] 31 0.31
gi|13491168 pumilio homolog 2 [Homo sapiens] 30 0.40
gi|28559039 mediator complex subunit 1 [Homo sapiens] 30 0.40
gi|237512982 voltage-gated sodium channel type V alpha isoform f... 30 0.53
gi|237512980 voltage-gated sodium channel type V alpha isoform e... 30 0.53
gi|37622907 voltage-gated sodium channel type V alpha isoform a ... 30 0.53
gi|30089970 voltage-gated sodium channel type V alpha isoform b ... 30 0.53
gi|150417969 voltage-gated sodium channel type V alpha isoform d... 30 0.53
gi|150417967 voltage-gated sodium channel type V alpha isoform c... 30 0.53
gi|217416343 fibrosin-like 1 [Homo sapiens] 30 0.53
gi|116256340 SEC31 homolog A isoform 3 [Homo sapiens] 30 0.53
gi|116256338 SEC31 homolog A isoform 1 [Homo sapiens] 30 0.53
gi|37574606 zinc finger protein 198 [Homo sapiens] 30 0.53
gi|4508011 zinc finger protein 198 [Homo sapiens] 30 0.53
gi|41349441 SEC31 homolog A isoform 2 [Homo sapiens] 30 0.53
gi|41349439 SEC31 homolog A isoform 1 [Homo sapiens] 30 0.53
gi|60097902 filaggrin [Homo sapiens] 30 0.69
gi|27502386 nuclear factor of activated T-cells, cytosolic compo... 30 0.69
gi|19923350 nuclear factor of activated T-cells, cytosolic compo... 30 0.69
gi|27502393 nuclear factor of activated T-cells, cytosolic compo... 30 0.69
>gi|84043956 distal-less homeobox 1 isoform 2 [Homo sapiens]
Length = 129
Score = 267 bits (683), Expect = 2e-72
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MTMTTMPESLNSPVSGKAVFMEFGPPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAYSSA 60
MTMTTMPESLNSPVSGKAVFMEFGPPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAYSSA
Sbjct: 1 MTMTTMPESLNSPVSGKAVFMEFGPPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAYSSA 60
Query: 61 SSFSRPLGYPYVNSVSSHASSPYISSVQSYPGSASLAQSRLEDPGQDLVPKQAIQVQEAD 120
SSFSRPLGYPYVNSVSSHASSPYISSVQSYPGSASLAQSRLEDPGQDLVPKQAIQVQEAD
Sbjct: 61 SSFSRPLGYPYVNSVSSHASSPYISSVQSYPGSASLAQSRLEDPGQDLVPKQAIQVQEAD 120
Query: 121 EAGWGGSGG 129
EAGWGGSGG
Sbjct: 121 EAGWGGSGG 129
>gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens]
Length = 255
Score = 223 bits (567), Expect = 4e-59
Identities = 111/128 (86%), Positives = 113/128 (88%), Gaps = 3/128 (2%)
Query: 1 MTMTTMPESLNSPVSGKAVFMEFGPPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAYSSA 60
MTMTTMPESLNSPVSGKAVFMEFGPPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAYSSA
Sbjct: 1 MTMTTMPESLNSPVSGKAVFMEFGPPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAYSSA 60
Query: 61 SSFSRPLGYPYVNSVSSHASSPYISSVQSYPGSASLAQSRLEDPGQDLVPKQAIQVQEAD 120
SSFSRPLGYPYVNSVSSHASSPYISSVQSYPGSASLAQSRLEDPG D + V E
Sbjct: 61 SSFSRPLGYPYVNSVSSHASSPYISSVQSYPGSASLAQSRLEDPGAD---SEKSTVVEGG 117
Query: 121 EAGWGGSG 128
E + G G
Sbjct: 118 EVRFNGKG 125
>gi|82659115 distal-less homeobox 6 [Homo sapiens]
Length = 265
Score = 70.1 bits (170), Expect = 5e-13
Identities = 51/140 (36%), Positives = 67/140 (47%), Gaps = 17/140 (12%)
Query: 1 MTMTTMPESLNSPVSGKAVFMEFGPPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAYSSA 60
MTMTTM + L S K+ FMEFG QQ M+ HY +HCLHSA + G++
Sbjct: 2 MTMTTMADGLEGQDSSKSAFMEFGQQQQQQHSPAMAGAHYPLHCLHSAAAAAAAGSHHHH 61
Query: 61 SSFSRPLGYPYV----NSVS--SHASSPYISS------VQSYPGSASLAQSRLEDPGQDL 108
G PY NS + S A+ PY+S +QSY S++ AQ+R +D Q
Sbjct: 62 HHQHHHHGSPYASGGGNSYNHRSLAAYPYMSHSQHSPYLQSYHNSSAAAQTRGDDTDQ-- 119
Query: 109 VPKQAIQVQEADEAGWGGSG 128
Q V E E + G G
Sbjct: 120 ---QKTTVIENGEIRFNGKG 136
>gi|197276670 spermatogenesis and centriole associated 1 isoform 2
[Homo sapiens]
Length = 441
Score = 41.2 bits (95), Expect = 2e-04
Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 16/135 (11%)
Query: 7 PESLNSPVSGKAVFMEFGP-PNQQMSP----------SPMSHGHYSMHCLHSAGHSQPDG 55
P SL SP++G + GP P Q SP P++ S L S G P
Sbjct: 110 PGSLMSPLTGTLSTLLSGPAPTSQSSPLTSFLTSPIAGPLTGTLASSLGLPSTGTLTPSS 169
Query: 56 AYSS--ASSFSRPLGYPYVNSVSSHASSPYISSVQSYPGSASLAQSRLEDPGQDLVPKQA 113
+ A S S PL P + +V+ SSP +SS + PG ++Q+ L +P +LV +A
Sbjct: 170 LVAGPVAMSQSSPLIAPVMGTVAVSLSSPLLSSTATPPG---VSQNLLANPMSNLVLPEA 226
Query: 114 IQVQEADEAGWGGSG 128
+++ A+ G +G
Sbjct: 227 PRLRLAEPLRGGPTG 241
>gi|197276668 spermatogenesis and centriole associated 1 isoform 1
[Homo sapiens]
Length = 591
Score = 41.2 bits (95), Expect = 2e-04
Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 16/135 (11%)
Query: 7 PESLNSPVSGKAVFMEFGP-PNQQMSP----------SPMSHGHYSMHCLHSAGHSQPDG 55
P SL SP++G + GP P Q SP P++ S L S G P
Sbjct: 110 PGSLMSPLTGTLSTLLSGPAPTSQSSPLTSFLTSPIAGPLTGTLASSLGLPSTGTLTPSS 169
Query: 56 AYSS--ASSFSRPLGYPYVNSVSSHASSPYISSVQSYPGSASLAQSRLEDPGQDLVPKQA 113
+ A S S PL P + +V+ SSP +SS + PG ++Q+ L +P +LV +A
Sbjct: 170 LVAGPVAMSQSSPLIAPVMGTVAVSLSSPLLSSTATPPG---VSQNLLANPMSNLVLPEA 226
Query: 114 IQVQEADEAGWGGSG 128
+++ A+ G +G
Sbjct: 227 PRLRLAEPLRGGPTG 241
>gi|194363771 sperm specific antigen 2 isoform 1 [Homo sapiens]
Length = 1259
Score = 37.4 bits (85), Expect = 0.003
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 17/73 (23%)
Query: 25 PPNQQMSPSPMSHGHYSMHCLHS--------------AGHSQPDGAYSSASSFSRPLGYP 70
P +++P PMS S+H +HS + HS P+ + ++ S+F+ P G P
Sbjct: 829 PTCSRLAPPPMSQSTCSLHSIHSEWQERPLCEHTRTLSTHSVPNISGATCSAFASPFGCP 888
Query: 71 YVNSVSSHASSPY 83
Y + HA+ PY
Sbjct: 889 YSH---RHATYPY 898
>gi|28557788 sperm specific antigen 2 isoform 2 [Homo sapiens]
Length = 1256
Score = 37.4 bits (85), Expect = 0.003
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 17/73 (23%)
Query: 25 PPNQQMSPSPMSHGHYSMHCLHS--------------AGHSQPDGAYSSASSFSRPLGYP 70
P +++P PMS S+H +HS + HS P+ + ++ S+F+ P G P
Sbjct: 829 PTCSRLAPPPMSQSTCSLHSIHSEWQERPLCEHTRTLSTHSVPNISGATCSAFASPFGCP 888
Query: 71 YVNSVSSHASSPY 83
Y + HA+ PY
Sbjct: 889 YSH---RHATYPY 898
>gi|153792012 DNA polymerase zeta [Homo sapiens]
Length = 3130
Score = 33.9 bits (76), Expect = 0.037
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 54 DGAYSSASSFSRPLGYPY-VNSVSSHASSPYISSVQSYPGSASLAQSRLEDPGQDLVPKQ 112
+ YS S S Y + +N++ + S Q P +L Q L D QDL P Q
Sbjct: 1630 ESCYSLEDSLSPEHNYNFDINTIGQTGFCSFYSGSQFVPADQNLPQKFLSDAVQDLFPGQ 1689
Query: 113 AIQVQE 118
AI+ E
Sbjct: 1690 AIEKNE 1695
>gi|8923887 zinc finger protein 395 [Homo sapiens]
Length = 513
Score = 31.6 bits (70), Expect = 0.18
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Query: 2 TMTTMPESLNSPVSGKAVFMEFGPPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAYSSAS 61
+MT +P S P KA + P S + G S S H Q D AY +
Sbjct: 358 SMTGLPLSALPPPLHKA---QSSGPEHPGPESSLPSGALSKSAPGSFWHIQADHAYQALP 414
Query: 62 SFSRPLGYPYVNSVSSHASSPYISSVQSYPGSASLAQSRLEDP 104
SF P+ P++ + S A++P + S S SL+ S + P
Sbjct: 415 SFQIPVS-PHIYTSVSWAAAPSAACSLSPVRSRSLSFSEPQQP 456
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 31.2 bits (69), Expect = 0.24
Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 12/113 (10%)
Query: 5 TMPESLNSPVSGKAVFMEFGPPNQQMSPSPMSHGHYSMH-------CLHSAGHSQPDGAY 57
T+ + P++ + ++FG P +Q P+SH ++H L+S H +
Sbjct: 864 TLARRDDDPLNARVALLQFGGPGEQQVAFPLSHNLTAIHEALETTQYLNSFSHVGAGVVH 923
Query: 58 SSASSFSRPLGYPYVNSVSSHASSPYISSVQSYPGSASLAQSRLEDPGQDLVP 110
+ + P G HA ++ G+ SL +S Q++VP
Sbjct: 924 AINAIVRSPRG-----GARRHAELSFVFLTDGVTGNDSLHESAHSMRKQNVVP 971
>gi|113204609 zinc finger protein 750 [Homo sapiens]
Length = 723
Score = 30.8 bits (68), Expect = 0.31
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Query: 24 GPPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAYSSASSFSR-PLGYPYVNSVSSHASSP 82
GP + ++PSP ++ HY + + P G Y S+FS L P V ++ SS
Sbjct: 289 GPIPKHLAPSPATYDHYRFFQQYPSNLPIPYGFYRPESAFSSYGLRLPPVTGLTRDQSSH 348
Query: 83 YISSVQSYPGSASLAQSRLEDPGQDLVPKQAIQVQEADEAGWGG 126
+ ++S ++ DP + V ++ + EA ++ G
Sbjct: 349 LLEEATLVYPASSPSRLNPSDPNRKHVEFES-PIPEAKDSSKAG 391
>gi|13491168 pumilio homolog 2 [Homo sapiens]
Length = 1064
Score = 30.4 bits (67), Expect = 0.40
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 26 PNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAYSSASSFSRPLGYPYVNSVSSHASSPYIS 85
P ++P P H S LH G + G Y SA+ P S SS SS + S
Sbjct: 631 PGHSLTPPPSLSSHGSSSSLHLGGLTNGSGRYISAA----PGAEAKYRSASS-TSSLFSS 685
Query: 86 SVQSYPGSASLAQSRLEDPGQDLVP 110
S Q +P SRL D++P
Sbjct: 686 SSQLFP------PSRLRYNRSDIMP 704
>gi|28559039 mediator complex subunit 1 [Homo sapiens]
Length = 1581
Score = 30.4 bits (67), Expect = 0.40
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 25 PPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAYSSASSFSRPLGYPYVNSVSSHASSPYI 84
P M P SH Y+ S+ S+ ++SS+SS S +S S +SS +
Sbjct: 1068 PKGTVMVGKPSSHSQYTSSGSVSSSGSKSHHSHSSSSSSSASTSGKMKSSKSEGSSSSKL 1127
Query: 85 SS-VQSYPGSASLAQSR 100
SS + S GS+ +QS+
Sbjct: 1128 SSSMYSSQGSSGSSQSK 1144
>gi|237512982 voltage-gated sodium channel type V alpha isoform f
[Homo sapiens]
Length = 1962
Score = 30.0 bits (66), Expect = 0.53
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 56 AYSSASSFSRPLGYPYVNSVSSHASSPYISSV 87
AY + +FSRPLG P +S+SS + P SV
Sbjct: 1895 AYVMSENFSRPLGPPSSSSISSTSFPPSYDSV 1926
>gi|237512980 voltage-gated sodium channel type V alpha isoform e
[Homo sapiens]
Length = 1983
Score = 30.0 bits (66), Expect = 0.53
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 56 AYSSASSFSRPLGYPYVNSVSSHASSPYISSV 87
AY + +FSRPLG P +S+SS + P SV
Sbjct: 1916 AYVMSENFSRPLGPPSSSSISSTSFPPSYDSV 1947
>gi|37622907 voltage-gated sodium channel type V alpha isoform a [Homo
sapiens]
Length = 2016
Score = 30.0 bits (66), Expect = 0.53
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 56 AYSSASSFSRPLGYPYVNSVSSHASSPYISSV 87
AY + +FSRPLG P +S+SS + P SV
Sbjct: 1949 AYVMSENFSRPLGPPSSSSISSTSFPPSYDSV 1980
>gi|30089970 voltage-gated sodium channel type V alpha isoform b [Homo
sapiens]
Length = 2015
Score = 30.0 bits (66), Expect = 0.53
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 56 AYSSASSFSRPLGYPYVNSVSSHASSPYISSV 87
AY + +FSRPLG P +S+SS + P SV
Sbjct: 1948 AYVMSENFSRPLGPPSSSSISSTSFPPSYDSV 1979
>gi|150417969 voltage-gated sodium channel type V alpha isoform d
[Homo sapiens]
Length = 1998
Score = 30.0 bits (66), Expect = 0.53
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 56 AYSSASSFSRPLGYPYVNSVSSHASSPYISSV 87
AY + +FSRPLG P +S+SS + P SV
Sbjct: 1931 AYVMSENFSRPLGPPSSSSISSTSFPPSYDSV 1962
>gi|150417967 voltage-gated sodium channel type V alpha isoform c
[Homo sapiens]
Length = 2016
Score = 30.0 bits (66), Expect = 0.53
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 56 AYSSASSFSRPLGYPYVNSVSSHASSPYISSV 87
AY + +FSRPLG P +S+SS + P SV
Sbjct: 1949 AYVMSENFSRPLGPPSSSSISSTSFPPSYDSV 1980
>gi|217416343 fibrosin-like 1 [Homo sapiens]
Length = 1045
Score = 30.0 bits (66), Expect = 0.53
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 32 PSPMSHGHYSMHCLHS----AGHSQP--DGAYSSASSFSRPLGYPYVNSVSSHASSPYIS 85
P P G H S AGHSQ +G + + S S PLG S+S H P++S
Sbjct: 302 PPPQPRGLLPTHVPASLGAFAGHSQAAANGLHGLSRSSSAPLGLGKHVSLSPHGPGPHLS 361
Query: 86 SVQSYPGSASLAQSRL 101
+ S+ S AQ +L
Sbjct: 362 T--SHLALRSQAQHQL 375
>gi|116256340 SEC31 homolog A isoform 3 [Homo sapiens]
Length = 1205
Score = 30.0 bits (66), Expect = 0.53
Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 5/108 (4%)
Query: 2 TMTTMPESLNSPVSGKAVFMEFGPPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAY---S 58
T P N P G + P P+ H H + QP Y +
Sbjct: 828 TQQYYPHGENPPPPGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGT 887
Query: 59 SASSFSRPLGYPYVNSVSSHASSPYISSVQSYPGSASL--AQSRLEDP 104
S+ RP + +++ ++PYISS SY G + L AQ + P
Sbjct: 888 GGSAMYRPQQPVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSP 935
>gi|116256338 SEC31 homolog A isoform 1 [Homo sapiens]
Length = 1220
Score = 30.0 bits (66), Expect = 0.53
Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 5/108 (4%)
Query: 2 TMTTMPESLNSPVSGKAVFMEFGPPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAY---S 58
T P N P G + P P+ H H + QP Y +
Sbjct: 828 TQQYYPHGENPPPPGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGT 887
Query: 59 SASSFSRPLGYPYVNSVSSHASSPYISSVQSYPGSASL--AQSRLEDP 104
S+ RP + +++ ++PYISS SY G + L AQ + P
Sbjct: 888 GGSAMYRPQQPVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSP 935
>gi|37574606 zinc finger protein 198 [Homo sapiens]
Length = 1377
Score = 30.0 bits (66), Expect = 0.53
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 47 SAGHSQPDGAYSSASSFSRPLGYPYVNSVSSHASSP---YISSVQSYP 91
SA H PD S ++SF R P V+S+S AS P + SVQ P
Sbjct: 276 SATHHNPDSWISQSASFPRNQKQPGVDSLSPVASLPKQIFQPSVQQQP 323
>gi|4508011 zinc finger protein 198 [Homo sapiens]
Length = 1377
Score = 30.0 bits (66), Expect = 0.53
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 47 SAGHSQPDGAYSSASSFSRPLGYPYVNSVSSHASSP---YISSVQSYP 91
SA H PD S ++SF R P V+S+S AS P + SVQ P
Sbjct: 276 SATHHNPDSWISQSASFPRNQKQPGVDSLSPVASLPKQIFQPSVQQQP 323
>gi|41349441 SEC31 homolog A isoform 2 [Homo sapiens]
Length = 1181
Score = 30.0 bits (66), Expect = 0.53
Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 5/108 (4%)
Query: 2 TMTTMPESLNSPVSGKAVFMEFGPPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAY---S 58
T P N P G + P P+ H H + QP Y +
Sbjct: 789 TQQYYPHGENPPPPGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGT 848
Query: 59 SASSFSRPLGYPYVNSVSSHASSPYISSVQSYPGSASL--AQSRLEDP 104
S+ RP + +++ ++PYISS SY G + L AQ + P
Sbjct: 849 GGSAMYRPQQPVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSP 896
>gi|41349439 SEC31 homolog A isoform 1 [Homo sapiens]
Length = 1220
Score = 30.0 bits (66), Expect = 0.53
Identities = 27/108 (25%), Positives = 40/108 (37%), Gaps = 5/108 (4%)
Query: 2 TMTTMPESLNSPVSGKAVFMEFGPPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAY---S 58
T P N P G + P P+ H H + QP Y +
Sbjct: 828 TQQYYPHGENPPPPGFIMHGNVNPNAAGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGT 887
Query: 59 SASSFSRPLGYPYVNSVSSHASSPYISSVQSYPGSASL--AQSRLEDP 104
S+ RP + +++ ++PYISS SY G + L AQ + P
Sbjct: 888 GGSAMYRPQQPVAPPTSNAYPNTPYISSASSYTGQSQLYAAQHQASSP 935
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 29.6 bits (65), Expect = 0.69
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 2/85 (2%)
Query: 46 HSAGHSQPDGAYSSASSFSRPLGYPYVNSVSSHASSPYISSVQSYPGS--ASLAQSRLED 103
H H + + ++ SR G P+ + S ++ +S PG S Q +
Sbjct: 984 HPRSHHEDRAGHGHSADSSRQSGTPHAETSSGGQAASSHEQARSSPGERHGSRHQQSADS 1043
Query: 104 PGQDLVPKQAIQVQEADEAGWGGSG 128
+P++ D WG SG
Sbjct: 1044 SRHSGIPRRQASSAVRDSGHWGSSG 1068
>gi|27502386 nuclear factor of activated T-cells, cytosolic
component 1 isoform C [Homo sapiens]
Length = 930
Score = 29.6 bits (65), Expect = 0.69
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 26 PNQQMSPS------PMSHGHYSMHCLHSAGHSQPDGAYSSASSFSRPLGYPYVNSVSSHA 79
P+ + SPS P + CL A S ASS+ YPY + +S
Sbjct: 133 PSSKRSPSTATLSLPSLEAYRDPSCLSPASSLSSRSCNSEASSYESNYSYPYASPQTSPW 192
Query: 80 SSPYISSVQSYP 91
SP +S + P
Sbjct: 193 QSPCVSPKTTDP 204
>gi|19923350 nuclear factor of activated T-cells, cytosolic
component 1 isoform B [Homo sapiens]
Length = 825
Score = 29.6 bits (65), Expect = 0.69
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 26 PNQQMSPS------PMSHGHYSMHCLHSAGHSQPDGAYSSASSFSRPLGYPYVNSVSSHA 79
P+ + SPS P + CL A S ASS+ YPY + +S
Sbjct: 146 PSSKRSPSTATLSLPSLEAYRDPSCLSPASSLSSRSCNSEASSYESNYSYPYASPQTSPW 205
Query: 80 SSPYISSVQSYP 91
SP +S + P
Sbjct: 206 QSPCVSPKTTDP 217
>gi|27502393 nuclear factor of activated T-cells, cytosolic
component 1 isoform A [Homo sapiens]
Length = 716
Score = 29.6 bits (65), Expect = 0.69
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 26 PNQQMSPS------PMSHGHYSMHCLHSAGHSQPDGAYSSASSFSRPLGYPYVNSVSSHA 79
P+ + SPS P + CL A S ASS+ YPY + +S
Sbjct: 146 PSSKRSPSTATLSLPSLEAYRDPSCLSPASSLSSRSCNSEASSYESNYSYPYASPQTSPW 205
Query: 80 SSPYISSVQSYP 91
SP +S + P
Sbjct: 206 QSPCVSPKTTDP 217
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.124 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,009,032
Number of Sequences: 37866
Number of extensions: 286540
Number of successful extensions: 969
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 866
Number of HSP's gapped (non-prelim): 156
length of query: 129
length of database: 18,247,518
effective HSP length: 90
effective length of query: 39
effective length of database: 14,839,578
effective search space: 578743542
effective search space used: 578743542
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.