PSMD13 6283

Name: PSMD13	Sequence: fasta or formatted (376aa)		NCBI GI: 157502193
Description: proteasome 26S non-ATPase subunit 13 isoform 1		Referenced in: Proteasome
Other entries for this name: alt prot [378aa] proteasome 26S non-ATPase subunit 13 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.3 20 2 C cysteine 1.3 5 1 D aspartate 5.6 21 1 E glutamate 7.7 29 2 F phenylalanine 4.3 16 1 G glycine 5.3 20 1 H histidine 2.9 11 1 I isoleucine 4.5 17 2 K lysine 6.1 23 2 L leucine 13.6 51 2 M methionine 2.9 11 1 N asparagine 4.0 15 2 P proline 3.2 12 1 Q glutamine 6.4 24 2 R arginine 4.3 16 1 S serine 4.8 18 2 T threonine 5.9 22 1 V valine 8.2 31 2 W tryptophan 1.6 6 1 Y tyrosine 2.1 8 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 proteasome 26S non-ATPase subunit 13 isoform 1 [Hom... PSMD13 0.874 proteasome 26S non-ATPase subunit 13 isoform 2 [Hom... COPS7A 0.019 COP9 complex subunit 7a EIF3M 0.016 eukaryotic translation initiation factor 3, subunit ... FRMPD2 0.016 FERM and PDZ domain containing 2 isoform 1 COPS4 0.008 COP9 signalosome subunit 4 FRMPD2 0.008 FERM and PDZ domain containing 2 isoform 3 IFT172 0.007 selective LIM binding factor homolog COPS2 0.007 COP9 constitutive photomorphogenic homolog subunit ... COPS2 0.007 COP9 constitutive photomorphogenic homolog subunit 2 ... CCDC46 0.007 coiled-coil domain containing 46 isoform a LOC100294345 0.005 PREDICTED: similar to N-ethylmaleimide-sensitive fa... DYNC1H1 0.005 cytoplasmic dynein 1 heavy chain 1 TTC28 0.005 tetratricopeptide repeat domain 28 TTC15 0.005 tetratricopeptide repeat domain 15 SMC2 0.005 structural maintenance of chromosomes 2 SMC2 0.005 structural maintenance of chromosomes 2 SMC2 0.005 structural maintenance of chromosomes 2 RASEF 0.005 RAS and EF-hand domain containing TMED3 0.005 transmembrane emp24 domain containing 3 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.