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Search of human proteins with 77917617
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|77917617 hypothetical protein LOC54463 isoform 1 [Homo
sapiens]
(497 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|77917617 hypothetical protein LOC54463 isoform 1 [Homo sapiens] 993 0.0
gi|21361617 hypothetical protein LOC54463 isoform 2 [Homo sapiens] 688 0.0
gi|30023820 hypothetical protein LOC162427 [Homo sapiens] 255 6e-68
gi|187607445 hypothetical protein LOC79137 [Homo sapiens] 173 3e-43
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 42 0.001
gi|188219577 ring finger protein 19B isoform a [Homo sapiens] 41 0.003
gi|188219579 ring finger protein 19B isoform b [Homo sapiens] 41 0.003
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 40 0.004
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 40 0.004
gi|7662302 TBK1 binding protein 1 [Homo sapiens] 39 0.014
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 39 0.014
gi|40255047 pleckstrin homology domain containing, family H (wit... 37 0.032
gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens] 37 0.041
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens] 37 0.041
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho... 37 0.041
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho... 37 0.041
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho... 37 0.041
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho... 37 0.041
gi|45439367 gap junction protein, gamma 2, 47kDa [Homo sapiens] 37 0.041
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 37 0.041
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 37 0.041
gi|172072597 retinoblastoma-like 2 (p130) [Homo sapiens] 37 0.054
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens] 37 0.054
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens] 37 0.054
gi|38093637 Nance-Horan syndrome protein isoform 1 [Homo sapiens] 37 0.054
gi|229089140 leucine rich repeat containing 24 [Homo sapiens] 36 0.071
gi|110832843 TBP-associated factor 4 [Homo sapiens] 36 0.071
gi|47132519 Ras association and pleckstrin homology domains 1 is... 36 0.071
gi|21389423 junctional sarcoplasmic reticulum protein 1 [Homo sa... 36 0.071
gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens] 36 0.071
>gi|77917617 hypothetical protein LOC54463 isoform 1 [Homo sapiens]
Length = 497
Score = 993 bits (2567), Expect = 0.0
Identities = 497/497 (100%), Positives = 497/497 (100%)
Query: 1 MASPAPPEHAEEGCPAPAAEEQAPPSPPPPQASPAERQQQEEEAQEAGAAEGAGLQVEEA 60
MASPAPPEHAEEGCPAPAAEEQAPPSPPPPQASPAERQQQEEEAQEAGAAEGAGLQVEEA
Sbjct: 1 MASPAPPEHAEEGCPAPAAEEQAPPSPPPPQASPAERQQQEEEAQEAGAAEGAGLQVEEA 60
Query: 61 AGRAAAAVTWLLGEPVLWLGCRADELLSWKRPLRSLLGFVAANLLFWFLALTPWRVYHLI 120
AGRAAAAVTWLLGEPVLWLGCRADELLSWKRPLRSLLGFVAANLLFWFLALTPWRVYHLI
Sbjct: 61 AGRAAAAVTWLLGEPVLWLGCRADELLSWKRPLRSLLGFVAANLLFWFLALTPWRVYHLI 120
Query: 121 SVMILGRVIMQIIKDMVLSRTRGAQLWRSLSESWEVINSKPDERPRLSHCIAESWMNFSI 180
SVMILGRVIMQIIKDMVLSRTRGAQLWRSLSESWEVINSKPDERPRLSHCIAESWMNFSI
Sbjct: 121 SVMILGRVIMQIIKDMVLSRTRGAQLWRSLSESWEVINSKPDERPRLSHCIAESWMNFSI 180
Query: 181 FLQEMSLFKQQSPGKFCLLVCSVCTFFTILGSYIPGVILSYLLLLCAFLCPLFKCNDIGQ 240
FLQEMSLFKQQSPGKFCLLVCSVCTFFTILGSYIPGVILSYLLLLCAFLCPLFKCNDIGQ
Sbjct: 181 FLQEMSLFKQQSPGKFCLLVCSVCTFFTILGSYIPGVILSYLLLLCAFLCPLFKCNDIGQ 240
Query: 241 KIYSKIKSVLLKLDFGIGEYINQKKRERSEADKEKSHKDDSELDFSALCPKISLTVAAKE 300
KIYSKIKSVLLKLDFGIGEYINQKKRERSEADKEKSHKDDSELDFSALCPKISLTVAAKE
Sbjct: 241 KIYSKIKSVLLKLDFGIGEYINQKKRERSEADKEKSHKDDSELDFSALCPKISLTVAAKE 300
Query: 301 LSVSDTDVSEVSWTDNGTFNLSEGYTPQTDTSDDLDRPSEEVFSRDLSDFPSLENGMGTN 360
LSVSDTDVSEVSWTDNGTFNLSEGYTPQTDTSDDLDRPSEEVFSRDLSDFPSLENGMGTN
Sbjct: 301 LSVSDTDVSEVSWTDNGTFNLSEGYTPQTDTSDDLDRPSEEVFSRDLSDFPSLENGMGTN 360
Query: 361 DEDELSLGLPTELKRKKEQLDSGHRPSKETQSAAGLTLPLNSDQTFHLMSNLAGDVITAA 420
DEDELSLGLPTELKRKKEQLDSGHRPSKETQSAAGLTLPLNSDQTFHLMSNLAGDVITAA
Sbjct: 361 DEDELSLGLPTELKRKKEQLDSGHRPSKETQSAAGLTLPLNSDQTFHLMSNLAGDVITAA 420
Query: 421 VTAAIKDQLEGVQQALSQAAPIPEEDTDTEEGDDFELLDQSELDQIESELGLTQDQEAEA 480
VTAAIKDQLEGVQQALSQAAPIPEEDTDTEEGDDFELLDQSELDQIESELGLTQDQEAEA
Sbjct: 421 VTAAIKDQLEGVQQALSQAAPIPEEDTDTEEGDDFELLDQSELDQIESELGLTQDQEAEA 480
Query: 481 QQNKKSSGFLSNLLGGH 497
QQNKKSSGFLSNLLGGH
Sbjct: 481 QQNKKSSGFLSNLLGGH 497
>gi|21361617 hypothetical protein LOC54463 isoform 2 [Homo sapiens]
Length = 356
Score = 688 bits (1776), Expect = 0.0
Identities = 345/346 (99%), Positives = 346/346 (100%)
Query: 152 ESWEVINSKPDERPRLSHCIAESWMNFSIFLQEMSLFKQQSPGKFCLLVCSVCTFFTILG 211
+SWEVINSKPDERPRLSHCIAESWMNFSIFLQEMSLFKQQSPGKFCLLVCSVCTFFTILG
Sbjct: 11 KSWEVINSKPDERPRLSHCIAESWMNFSIFLQEMSLFKQQSPGKFCLLVCSVCTFFTILG 70
Query: 212 SYIPGVILSYLLLLCAFLCPLFKCNDIGQKIYSKIKSVLLKLDFGIGEYINQKKRERSEA 271
SYIPGVILSYLLLLCAFLCPLFKCNDIGQKIYSKIKSVLLKLDFGIGEYINQKKRERSEA
Sbjct: 71 SYIPGVILSYLLLLCAFLCPLFKCNDIGQKIYSKIKSVLLKLDFGIGEYINQKKRERSEA 130
Query: 272 DKEKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDT 331
DKEKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDT
Sbjct: 131 DKEKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVSEVSWTDNGTFNLSEGYTPQTDT 190
Query: 332 SDDLDRPSEEVFSRDLSDFPSLENGMGTNDEDELSLGLPTELKRKKEQLDSGHRPSKETQ 391
SDDLDRPSEEVFSRDLSDFPSLENGMGTNDEDELSLGLPTELKRKKEQLDSGHRPSKETQ
Sbjct: 191 SDDLDRPSEEVFSRDLSDFPSLENGMGTNDEDELSLGLPTELKRKKEQLDSGHRPSKETQ 250
Query: 392 SAAGLTLPLNSDQTFHLMSNLAGDVITAAVTAAIKDQLEGVQQALSQAAPIPEEDTDTEE 451
SAAGLTLPLNSDQTFHLMSNLAGDVITAAVTAAIKDQLEGVQQALSQAAPIPEEDTDTEE
Sbjct: 251 SAAGLTLPLNSDQTFHLMSNLAGDVITAAVTAAIKDQLEGVQQALSQAAPIPEEDTDTEE 310
Query: 452 GDDFELLDQSELDQIESELGLTQDQEAEAQQNKKSSGFLSNLLGGH 497
GDDFELLDQSELDQIESELGLTQDQEAEAQQNKKSSGFLSNLLGGH
Sbjct: 311 GDDFELLDQSELDQIESELGLTQDQEAEAQQNKKSSGFLSNLLGGH 356
>gi|30023820 hypothetical protein LOC162427 [Homo sapiens]
Length = 466
Score = 255 bits (652), Expect = 6e-68
Identities = 171/471 (36%), Positives = 261/471 (55%), Gaps = 35/471 (7%)
Query: 19 AEEQAPPSPPPPQASPAERQQQEEEAQEAGAAEGAGLQVEEAAGRAAAAVTWLLG--EPV 76
AE + P+ P P + R +++ +G+ E Q EAA RA V LG EP+
Sbjct: 2 AEAEGVPTTPGPASGSTFRGRRDV----SGSWERD--QQVEAAQRALVEV---LGPYEPL 52
Query: 77 LWLGCRADELLSWKRPLRSLLGFVAANLLFWFLALTPWRVYHLISVMILGRVIMQIIKDM 136
L R L W+RP RS L + N FWF ALT R+ L++ ++ V + K+
Sbjct: 53 L---SRVQAALVWERPARSALWCLGLNAAFWFFALTSLRLVFLLAFGLMIIVCIDQWKNK 109
Query: 137 VLSRTRGAQLWRSLSESWEVINSKPDERPRLSHCIAESWMNFSIFLQEMSLFKQQSPGKF 196
+ + + +ESW ++ + P L H +AE W++ +IF++ + LFK+Q+PGKF
Sbjct: 110 IWPEIKVPRPDALDNESWGFVHPRLLSVPELCHHVAEVWVSGTIFIRNVLLFKKQNPGKF 169
Query: 197 CLLVCSVCTFFTILGSYIPGVILSYLLLLCAFLCPLFKCNDIGQKIYSKIKSVLLKLDFG 256
CLL C + TF +LG Y+PG++LSYL+L+ + PL + + + Y ++K L +LDF
Sbjct: 170 CLLSCGILTFLAVLGRYVPGLLLSYLMLVTVMMWPLAVYHRLWDRAYVRLKPALQRLDFS 229
Query: 257 IGEYINQKKRERS------EADKEKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVS- 309
+ Y+ K+RER ++ + DSE + +A CP++ + A+EL+++D++ S
Sbjct: 230 VRGYMMSKQRERQLRRRALHPERAMDNHSDSEEELAAFCPQLDDSTVARELAITDSEHSD 289
Query: 310 -EVSWTDNGTFNLSEGYTPQTDTSDDLDRPS--EEVFSRDLSDFPSLE-NGMGTNDEDEL 365
EVS TDNGTFNLS G TP T+ S+DLD S EE F+RDL DFPS+ + G +DED+
Sbjct: 290 AEVSCTDNGTFNLSRGQTPLTEGSEDLDGHSDPEESFARDLPDFPSINMDPAGLDDEDDT 349
Query: 366 SLGLPTELKRKKEQLDSGHRPSKETQSAA------GLTLPLNSDQTFHLMSNLAGDVITA 419
S+G+P+ + R + P AA G LP+ S+ T +L S ++ +I
Sbjct: 350 SIGMPSLMYRSPPGAEEPQAPPASRDEAALPELLLG-ALPVGSNLTSNLASLVSQGMIQL 408
Query: 420 AVTAAIKDQLEG--VQQALSQAAPIPEEDTDTE-EGDDFELLDQSELDQIE 467
A++ A + G Q+A P D DT+ EGDDFELLDQSEL Q++
Sbjct: 409 ALSGASQPGPSGAPAQRATRGFLRSPSSDLDTDAEGDDFELLDQSELSQLD 459
>gi|187607445 hypothetical protein LOC79137 [Homo sapiens]
Length = 543
Score = 173 bits (439), Expect = 3e-43
Identities = 143/498 (28%), Positives = 232/498 (46%), Gaps = 84/498 (16%)
Query: 48 GAAEGAGLQVEEAAGRAA--AAVTWLLGE--PVLWLGCR--------ADELLSWKRPLRS 95
G G L + EA A AA +G LWL R A LL W++PL S
Sbjct: 23 GLGLGLSLGMSEATSEAEEEAATAEAVGRLATTLWLRLRGWEAVLAAAQRLLVWEKPLHS 82
Query: 96 LLGFVAANLLFWFLALTPWRVYHLISVMILGRVIMQIIKDMVLSRTRGAQLWRSLSESWE 155
L+ A N LFW L+ + R + L+SV +L ++ + + L + S+S
Sbjct: 83 LVTAAALNGLFWLLSSSSLRPFFLLSVSLLAYFLLDLWQPRFLPDVSASSPEEPHSDSEG 142
Query: 156 V-INSKPD--ERPRLSHCIAESWMNFSIFLQEMSLFKQQSPGKFCLLVCSVCTFFTILGS 212
++P P L +AESW+ F I LQE+ +K+Q+P +FC+ VCS C +LG
Sbjct: 143 AGSGARPHLLSVPELCRYLAESWLTFQIHLQELLQYKRQNPAQFCVRVCSGCAVLAVLGH 202
Query: 213 YIPGVILSYLLLLCAFLCPLFKCNDIGQKIYSKIKSVLLKLDFGIGEYIN-------QKK 265
Y+PG+++SY++LL L PL +++ Q++Y++++ +L++LD+ + N ++K
Sbjct: 203 YVPGIMISYIVLLSILLWPLVVYHELIQRMYTRLEPLLMQLDYSMKAEANALHHKHDKRK 262
Query: 266 RERSEA-----DKEKSHKDDSELDFSALCPKISLTVAAKELSVSDTDVS--EVSWTDNGT 318
R+ A + + +SE + + P + + A L+++D+++S E S ++G
Sbjct: 263 RQGKNAPPGGDEPLAETESESEAELAGFSPVVDVKKTALALAITDSELSDEEASILESGG 322
Query: 319 FNLSEGYTPQ-TDTSDDLDRPS-----EEVFSRDLSDFPSLENGMGTNDEDELS-----L 367
F++S TPQ TD S+DLD+ S EE SRDL G +E EL+ L
Sbjct: 323 FSVSRATTPQLTDVSEDLDQQSLPSEPEETLSRDL----------GEGEEGELAPPEDLL 372
Query: 368 GLPTELKRKKEQLDSGHRPSKETQSAAGLTLPLNSDQTFH----------------LMSN 411
G P L R+ + ++ L+ PL+ T +
Sbjct: 373 GRPQALSRQALDSEEEEEDVAAKETLLRLSSPLHFVNTHFNGAGSPPDGVKCSPGGPVET 432
Query: 412 LAGDVITAAVT-----------------AAIKDQLEGVQQALSQAAPIPEEDTDTEEGDD 454
L+ + ++ +T A L V Q Q P PEE+ + +D
Sbjct: 433 LSPETVSGGLTALPGTLSPPLCLVGSDPAPSPSILPPVPQDSPQPLPAPEEE-EALTTED 491
Query: 455 FELLDQSELDQIESELGL 472
FELLDQ EL+Q+ +ELGL
Sbjct: 492 FELLDQGELEQLNAELGL 509
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 42.4 bits (98), Expect = 0.001
Identities = 31/80 (38%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 1 MASPAPPEHAEEGCPAPAAEEQAPPSPPPPQASPAERQQQEEEAQEAGAAEGAGLQVEEA 60
+A PA P A P PA + PP PPPPQ +QQQ Q EG ++
Sbjct: 190 VAPPAGPRRA----PPPAVAAREPPLPPPPQPPAPPQQQQPPPPQPQPPPEGGAVR---- 241
Query: 61 AGRAAAAVTWLLGEPVLWLG 80
AG AA V+ L E V +LG
Sbjct: 242 AGGAARPVS--LREVVRYLG 259
Score = 35.8 bits (81), Expect = 0.092
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 2 ASPAPPEHAEEGCPAPAAEEQAPPSP-PPPQASPAERQQQEEEAQEAGAAEGA 53
A+P P A G PA AA PP+P PPP +P + A AA A
Sbjct: 106 ATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATA 158
>gi|188219577 ring finger protein 19B isoform a [Homo sapiens]
Length = 732
Score = 40.8 bits (94), Expect = 0.003
Identities = 27/60 (45%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 2 ASPAPPEHAEEGCPAPAAEEQAPPSPPPPQASPAERQQQEEEAQEAGAAEGAGLQVEEAA 61
A P PP PAPAA + PPP+A PAE E EA+ A AA G EEAA
Sbjct: 54 AEPPPPAAQPPPAPAPAAAQG-----PPPEALPAE-PAAEAEAEAAAAAAEPGFDDEEAA 107
>gi|188219579 ring finger protein 19B isoform b [Homo sapiens]
Length = 587
Score = 40.8 bits (94), Expect = 0.003
Identities = 27/60 (45%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 2 ASPAPPEHAEEGCPAPAAEEQAPPSPPPPQASPAERQQQEEEAQEAGAAEGAGLQVEEAA 61
A P PP PAPAA + PPP+A PAE E EA+ A AA G EEAA
Sbjct: 54 AEPPPPAAQPPPAPAPAAAQG-----PPPEALPAE-PAAEAEAEAAAAAAEPGFDDEEAA 107
>gi|21264565 AT rich interactive domain 1A isoform a [Homo
sapiens]
Length = 2285
Score = 40.4 bits (93), Expect = 0.004
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 10 AEEGCPAPAAEEQAPPSPPPPQASPAERQQQEEEAQEAGAAEGAGL-QVEEAAGR 63
A + PA A+ PP PPP + AE+QQ+EE EA AA A +++ AAG+
Sbjct: 2 AAQVAPAAASSLGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQ 56
Score = 30.8 bits (68), Expect = 3.0
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 4 PAPPEHAEEGCPAPAAE---EQAPPSPPP---PQA-SPAERQQQEEEAQEAGAAEGAGLQ 56
P+ P H + P P+ + +Q P S PP PQA SP ++QQ ++ A + + A Q
Sbjct: 522 PSQPPHQQSPAPYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQ 581
Query: 57 VEEAAGRAAA 66
+ + A
Sbjct: 582 PQSQQSQQTA 591
>gi|21264575 AT rich interactive domain 1A isoform b [Homo
sapiens]
Length = 2068
Score = 40.4 bits (93), Expect = 0.004
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 10 AEEGCPAPAAEEQAPPSPPPPQASPAERQQQEEEAQEAGAAEGAGL-QVEEAAGR 63
A + PA A+ PP PPP + AE+QQ+EE EA AA A +++ AAG+
Sbjct: 2 AAQVAPAAASSLGNPPPPPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQ 56
Score = 30.8 bits (68), Expect = 3.0
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 4 PAPPEHAEEGCPAPAAE---EQAPPSPPP---PQA-SPAERQQQEEEAQEAGAAEGAGLQ 56
P+ P H + P P+ + +Q P S PP PQA SP ++QQ ++ A + + A Q
Sbjct: 522 PSQPPHQQSPAPYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQQPAPSTLSQQAAYPQ 581
Query: 57 VEEAAGRAAA 66
+ + A
Sbjct: 582 PQSQQSQQTA 591
>gi|7662302 TBK1 binding protein 1 [Homo sapiens]
Length = 615
Score = 38.5 bits (88), Expect = 0.014
Identities = 34/109 (31%), Positives = 44/109 (40%), Gaps = 12/109 (11%)
Query: 3 SPAPPEHAEEGCPAPAAEEQAPPSPPPPQASPAERQQQEEEAQEAGA---AEGAGLQVEE 59
SP PP CPAP + + PP PPP + + AER + + A + ++ E
Sbjct: 415 SPVPPS-----CPAP--QPRPPPPPPPGERTLAERAYAKPPSHHVKAGFQGRRSYSELAE 467
Query: 60 AAGRAAAAVTWLLGEPVLWLGCRA--DELLSWKRPLRSLLGFVAANLLF 106
A A A+ WL E RA EL RPL F L F
Sbjct: 468 GAAYAGASPPWLQAEAATLPKPRAYGSELYGPGRPLSPRRAFEGIRLRF 516
Score = 29.6 bits (65), Expect = 6.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 3 SPAPPEHAEEGCPAPAAEEQAPPSPPPPQASPAERQ 38
SP+PP A CP + SP PP SP +R+
Sbjct: 349 SPSPPARAAPPCPPCQSPVPQRRSPVPPCPSPQQRR 384
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 38.5 bits (88), Expect = 0.014
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 2 ASPAPPEHAEEG-CPAPAAEEQAPPSPPPPQ---ASPAERQQQEEEAQEAGAAEG 52
+SP+ H CP+P PP PP P+ ASP R +++EEA+E+ +A G
Sbjct: 468 SSPSTSWHRPASPCPSPGPGHTLPPKPPSPRGTTASPKGRVRRKEEAKESPSAAG 522
>gi|40255047 pleckstrin homology domain containing, family H (with
MyTH4 domain) member 3 [Homo sapiens]
Length = 793
Score = 37.4 bits (85), Expect = 0.032
Identities = 34/110 (30%), Positives = 45/110 (40%), Gaps = 9/110 (8%)
Query: 15 PAPAAEEQAPPSP-PPPQA--------SPAERQQQEEEAQEAGAAEGAGLQVEEAAGRAA 65
PAP E+ P+P PPP A SP +++ E A+ GA AG E G A
Sbjct: 566 PAPPREDPPRPTPRPPPSAALLAGALWSPGLAKRRAERARRGGAGRTAGSIAREGGGGAG 625
Query: 66 AAVTWLLGEPVLWLGCRADELLSWKRPLRSLLGFVAANLLFWFLALTPWR 115
A L G L RA+ + ++ GF AA L+ P R
Sbjct: 626 TAAAVLGGWKRLRGMGRAEAMAAYLALAAQCPGFGAARYDVLELSTEPGR 675
>gi|19920317 cytoskeleton-associated protein 4 [Homo sapiens]
Length = 602
Score = 37.0 bits (84), Expect = 0.041
Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 14/108 (12%)
Query: 15 PAPAAEEQAPPSPPPPQASPAERQQQEEEAQ--EAGAAEGAGLQVEEAAGRAAAAVTWLL 72
P PA ++ PP P PQ P + Q + + G G G ++ AAAA
Sbjct: 36 PPPAPQQPPPPPAPHPQQHPQQHPQNQAHGKGGHRGGGGGGGKSSSSSSASAAAA----- 90
Query: 73 GEPVLWLGCRADELLSWKRPLRSLLGFVAANLLFWFLALTPWRVYHLI 120
A S R L L F+ L A + W V+H++
Sbjct: 91 -------AAAASSSASCSRRLGRALNFLFYLALVAAAAFSGWCVHHVL 131
>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
Length = 237
Score = 37.0 bits (84), Expect = 0.041
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 15 PAPAAEEQAPPSPPPPQASPAERQQQEEEAQEAGAAEGAGLQVEEAAGRAAAAVTWLLGE 74
P P APP P PP A P A A G G + A R + L+
Sbjct: 98 PPPQPSRPAPPPPAPPSALP--------RGGRAARAGGPGSRARAAGARGCRLRSQLVPV 149
Query: 75 PVLWLGCRADELLSWK 90
L LG R+DEL+ ++
Sbjct: 150 RALGLGHRSDELVRFR 165
>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 37.0 bits (84), Expect = 0.041
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 15 PAPAAEEQAPPSPPPPQASPAERQQQEEEAQEAGAAEGAGLQVEEAAGRAAAAVTWLLGE 74
P P APP P PP A P A A G G + A R + L+
Sbjct: 81 PPPQPSRPAPPPPAPPSALP--------RGGRAARAGGPGSRARAAGARGCRLRSQLVPV 132
Query: 75 PVLWLGCRADELLSWK 90
L LG R+DEL+ ++
Sbjct: 133 RALGLGHRSDELVRFR 148
>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 37.0 bits (84), Expect = 0.041
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 15 PAPAAEEQAPPSPPPPQASPAERQQQEEEAQEAGAAEGAGLQVEEAAGRAAAAVTWLLGE 74
P P APP P PP A P A A G G + A R + L+
Sbjct: 89 PPPQPSRPAPPPPAPPSALP--------RGGRAARAGGPGSRARAAGARGCRLRSQLVPV 140
Query: 75 PVLWLGCRADELLSWK 90
L LG R+DEL+ ++
Sbjct: 141 RALGLGHRSDELVRFR 156
>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 37.0 bits (84), Expect = 0.041
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 15 PAPAAEEQAPPSPPPPQASPAERQQQEEEAQEAGAAEGAGLQVEEAAGRAAAAVTWLLGE 74
P P APP P PP A P A A G G + A R + L+
Sbjct: 81 PPPQPSRPAPPPPAPPSALP--------RGGRAARAGGPGSRARAAGARGCRLRSQLVPV 132
Query: 75 PVLWLGCRADELLSWK 90
L LG R+DEL+ ++
Sbjct: 133 RALGLGHRSDELVRFR 148
>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 37.0 bits (84), Expect = 0.041
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 15 PAPAAEEQAPPSPPPPQASPAERQQQEEEAQEAGAAEGAGLQVEEAAGRAAAAVTWLLGE 74
P P APP P PP A P A A G G + A R + L+
Sbjct: 89 PPPQPSRPAPPPPAPPSALP--------RGGRAARAGGPGSRARAAGARGCRLRSQLVPV 140
Query: 75 PVLWLGCRADELLSWK 90
L LG R+DEL+ ++
Sbjct: 141 RALGLGHRSDELVRFR 156
>gi|45439367 gap junction protein, gamma 2, 47kDa [Homo sapiens]
Length = 439
Score = 37.0 bits (84), Expect = 0.041
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 6 PPEHAEEGCPAPAAEEQAPPSPPPPQASPAERQQQEEEAQEAGAAEGAGLQVEEAAGRAA 65
PP HA PA EE+ P +EEE +E GAAEGAG + EEA A
Sbjct: 129 PPPHAGWPEPADLGEEE-----------PMLGLGEEEEEEETGAAEGAGEEAEEAGAEEA 177
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 37.0 bits (84), Expect = 0.041
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 4 PAPPEHAEEGCPAPAAEEQAPPSPPPPQASPA 35
PAP + P+P++ +PP PPPP A PA
Sbjct: 188 PAPSSASSSPSPSPSSSSPSPPPPPPPPAPPA 219
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 37.0 bits (84), Expect = 0.041
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 4 PAPPEHAEEGCPAPAAE--EQAPPSPPPPQASPAERQQQEEEAQEAG---AAEGAG 54
P PP H ++ P P +Q PP PPP P ++QQ Q++ A+G G
Sbjct: 61 PPPPPHQQQQQPPPQQPPPQQPPPHQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPG 116
>gi|172072597 retinoblastoma-like 2 (p130) [Homo sapiens]
Length = 1139
Score = 36.6 bits (83), Expect = 0.054
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 17 PAAEEQAPPSPPPPQASPAERQQQEEEAQEAGAAEGA 53
P+ +Q+PP PPPP A+ A +++E++ + AA A
Sbjct: 2 PSGGDQSPPPPPPPPAAAASDEEEEDDGEAEDAAPPA 38
Score = 31.2 bits (69), Expect = 2.3
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 21/88 (23%)
Query: 15 PAPAAEEQAPPSPPPPQASPAERQQQEEEAQEAG-AAEGAGLQVEEA---------AGRA 64
P+ + PP PPP A+ E ++ + EA++A AE Q+++ A
Sbjct: 2 PSGGDQSPPPPPPPPAAAASDEEEEDDGEAEDAAPPAESPTPQIQQRFDELCSRLNMDEA 61
Query: 65 AAAVTW-----------LLGEPVLWLGC 81
A A W L G + WL C
Sbjct: 62 ARAEAWDSYRSMSESYTLEGNDLHWLAC 89
>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
Length = 638
Score = 36.6 bits (83), Expect = 0.054
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 13/90 (14%)
Query: 1 MASPAPPEHAEEGCPAPAA-------EEQAPPSPPPPQASPAE------RQQQEEEAQEA 47
M P PP + + P P+ ++Q PP PPPP +S A +Q A
Sbjct: 477 MMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTTTSA 536
Query: 48 GAAEGAGLQVEEAAGRAAAAVTWLLGEPVL 77
G Q ++AA A+ + G P +
Sbjct: 537 GTGSIPPWQQQQAAAAASPGAPQMQGNPTM 566
>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
Length = 639
Score = 36.6 bits (83), Expect = 0.054
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 13/90 (14%)
Query: 1 MASPAPPEHAEEGCPAPAA-------EEQAPPSPPPPQASPAE------RQQQEEEAQEA 47
M P PP + + P P+ ++Q PP PPPP +S A +Q A
Sbjct: 477 MMPPPPPPPSGQPPPPPSGPLPPWQQQQQQPPPPPPPSSSMASSTPLPWQQNTTTTTTSA 536
Query: 48 GAAEGAGLQVEEAAGRAAAAVTWLLGEPVL 77
G Q ++AA A+ + G P +
Sbjct: 537 GTGSIPPWQQQQAAAAASPGAPQMQGNPTM 566
>gi|38093637 Nance-Horan syndrome protein isoform 1 [Homo sapiens]
Length = 1630
Score = 36.6 bits (83), Expect = 0.054
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 7 PEHAEEGCPAPAAEEQAPPSPPPPQASPAERQQQEE-EAQEAGAAEGAGL-QVEEAAGRA 64
PE PAP+ P PPPP +PA++ Q EA AG AG+ + AAG A
Sbjct: 54 PEEPARAVPAPSGL----PPPPPPLPAPADQTQPPHGEASVAGEESTAGIPEAAPAAGEA 109
Query: 65 AAA 67
++A
Sbjct: 110 SSA 112
>gi|229089140 leucine rich repeat containing 24 [Homo sapiens]
Length = 513
Score = 36.2 bits (82), Expect = 0.071
Identities = 22/57 (38%), Positives = 26/57 (45%)
Query: 16 APAAEEQAPPSPPPPQASPAERQQQEEEAQEAGAAEGAGLQVEEAAGRAAAAVTWLL 72
A + Q P PPPP A PA + + E A A G Q AA A A+T LL
Sbjct: 364 ASRQQPQQPAQPPPPAARPAGSEPRPEAGSMAFRALGVATQTAIAAAIALLALTALL 420
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 36.2 bits (82), Expect = 0.071
Identities = 27/81 (33%), Positives = 31/81 (38%), Gaps = 17/81 (20%)
Query: 2 ASPAPPEHAEEGCPAPAAEEQAPPSPP---------------PPQASPAERQQQEEEAQE 46
A PAP + PAPAA APP PP PP A+PA AQ
Sbjct: 248 APPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPA--VPPPAAAQN 305
Query: 47 AGAAEGAGLQVEEAAGRAAAA 67
G+A A A G A +
Sbjct: 306 GGSAGAAPAPAPAAGGPAGVS 326
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 36.2 bits (82), Expect = 0.071
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 4 PAPPEHAEEGCPAPAAEEQAPPSPPPPQASP 34
P PPE + P P + APP PPPP ASP
Sbjct: 918 PPPPESSLVFPPPPPSPVPAPPPPPPPTASP 948
>gi|21389423 junctional sarcoplasmic reticulum protein 1 [Homo
sapiens]
Length = 331
Score = 36.2 bits (82), Expect = 0.071
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 6 PPEHA--EEGCPAPAAEEQAPPS-PPPPQAS-------PAERQQQEEEAQEAGAAEGAGL 55
PP A E P P E QAPPS PP P+A P R+ E + +E G A G +
Sbjct: 164 PPSSAPREPSSPLPKFEAQAPPSAPPAPRAEAEVRPKIPGSREAAENDEEEPGEATGEAV 223
Query: 56 Q 56
+
Sbjct: 224 R 224
>gi|56549129 transmembrane anchor protein 1 isoform 3 [Homo sapiens]
Length = 170
Score = 36.2 bits (82), Expect = 0.071
Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 2 ASPAPPEHAEEGCPAPAAEEQAPPSP-----PPPQASPAERQQQEEEAQEAGAAEGAGLQ 56
ASP P E PAP AE P+P P P ASPA ++ E A E AG
Sbjct: 33 ASPEPARAPPE--PAPPAEATGAPAPSRPCAPEPAASPAGPEEPGEPAGLGELGEPAGPG 90
Query: 57 VEEAAGRAAAA 67
E G AAA
Sbjct: 91 EPEGPGDPAAA 101
Score = 31.2 bits (69), Expect = 2.3
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
Query: 2 ASPAPPEHAEEGCPAPAAE--EQA----PPSPPPPQASPAERQQQEEEAQE 46
ASPA PE E G PA E E A P P P A+PAE ++Q EA++
Sbjct: 66 ASPAGPE--EPGEPAGLGELGEPAGPGEPEGPGDPAAAPAEAEEQAVEARQ 114
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,665,240
Number of Sequences: 37866
Number of extensions: 1050177
Number of successful extensions: 14814
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 311
Number of HSP's that attempted gapping in prelim test: 11479
Number of HSP's gapped (non-prelim): 2933
length of query: 497
length of database: 18,247,518
effective HSP length: 106
effective length of query: 391
effective length of database: 14,233,722
effective search space: 5565385302
effective search space used: 5565385302
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.