Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 7770079
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7770079 tachykinin 1 isoform delta precursor [Homo sapiens]
(96 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7770079 tachykinin 1 isoform delta precursor [Homo sapiens] 199 3e-52
gi|7770075 tachykinin 1 isoform alpha precursor [Homo sapiens] 189 3e-49
gi|7770077 tachykinin 1 isoform gamma precursor [Homo sapiens] 187 2e-48
gi|4507341 tachykinin 1 isoform beta precursor [Homo sapiens] 177 2e-45
gi|4503273 angiotensin I converting enzyme 1 isoform 1 precursor... 28 1.2
gi|117938256 tachykinin 4 isoform alpha [Homo sapiens] 28 1.6
gi|117938264 tachykinin 4 isoform alpha-2 [Homo sapiens] 27 2.7
gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens] 27 3.5
gi|41406057 amyloid beta A4 protein isoform c precursor [Homo sa... 27 3.5
gi|41406055 amyloid beta A4 protein isoform b precursor [Homo sa... 27 3.5
gi|4502167 amyloid beta A4 protein isoform a precursor [Homo sap... 27 3.5
gi|209915570 amyloid beta A4 protein isoform e precursor [Homo s... 27 3.5
gi|209915573 amyloid beta A4 protein isoform f precursor [Homo s... 27 3.5
gi|39753957 lamina-associated polypeptide 1B [Homo sapiens] 27 3.5
gi|117938258 tachykinin 4 isoform beta [Homo sapiens] 26 6.0
gi|224809582 RAP1 GTPase activating protein isoform c [Homo sapi... 26 6.0
gi|224809578 RAP1 GTPase activating protein isoform a [Homo sapi... 26 6.0
gi|224809573 RAP1 GTPase activating protein isoform b [Homo sapi... 26 6.0
gi|29789403 PDZ domain containing 8 [Homo sapiens] 26 6.0
gi|117938262 tachykinin 4 isoform delta [Homo sapiens] 26 7.8
gi|117938260 tachykinin 4 isoform gamma [Homo sapiens] 26 7.8
>gi|7770079 tachykinin 1 isoform delta precursor [Homo sapiens]
Length = 96
Score = 199 bits (507), Expect = 3e-52
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 1 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK 60
MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
Sbjct: 1 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK 60
Query: 61 PQQFFGLMGKRDAGHGQISHKMAYERSAMQNYERRR 96
PQQFFGLMGKRDAGHGQISHKMAYERSAMQNYERRR
Sbjct: 61 PQQFFGLMGKRDAGHGQISHKMAYERSAMQNYERRR 96
>gi|7770075 tachykinin 1 isoform alpha precursor [Homo sapiens]
Length = 111
Score = 189 bits (481), Expect = 3e-49
Identities = 96/111 (86%), Positives = 96/111 (86%), Gaps = 15/111 (13%)
Query: 1 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK 60
MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
Sbjct: 1 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK 60
Query: 61 PQQFFGLMGKRDA---------------GHGQISHKMAYERSAMQNYERRR 96
PQQFFGLMGKRDA GHGQISHKMAYERSAMQNYERRR
Sbjct: 61 PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKMAYERSAMQNYERRR 111
>gi|7770077 tachykinin 1 isoform gamma precursor [Homo sapiens]
Length = 114
Score = 187 bits (474), Expect = 2e-48
Identities = 95/114 (83%), Positives = 96/114 (84%), Gaps = 18/114 (15%)
Query: 1 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK 60
MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
Sbjct: 1 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK 60
Query: 61 PQQFFGLMGKRDAGHGQISHK------------------MAYERSAMQNYERRR 96
PQQFFGLMGKRDAGHGQISHK +AYERSAMQNYERRR
Sbjct: 61 PQQFFGLMGKRDAGHGQISHKRHKTDSFVGLMGKRALNSVAYERSAMQNYERRR 114
>gi|4507341 tachykinin 1 isoform beta precursor [Homo sapiens]
Length = 129
Score = 177 bits (448), Expect = 2e-45
Identities = 95/129 (73%), Positives = 96/129 (74%), Gaps = 33/129 (25%)
Query: 1 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK 60
MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
Sbjct: 1 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK 60
Query: 61 PQQFFGLMGKRDA---------------GHGQISHK------------------MAYERS 87
PQQFFGLMGKRDA GHGQISHK +AYERS
Sbjct: 61 PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKRHKTDSFVGLMGKRALNSVAYERS 120
Query: 88 AMQNYERRR 96
AMQNYERRR
Sbjct: 121 AMQNYERRR 129
>gi|4503273 angiotensin I converting enzyme 1 isoform 1 precursor
[Homo sapiens]
Length = 1306
Score = 28.5 bits (62), Expect = 1.2
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 10 FFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRI 55
F +S + + ++ G D YW WY+S +++L EHL Q++
Sbjct: 207 FTALSNEAYKQD-GFTDTGAYWRSWYNSPTFEDDL----EHLYQQL 247
>gi|117938256 tachykinin 4 isoform alpha [Homo sapiens]
Length = 113
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 42 EELPEPFEHLLQRIARRPKPQQFFGLMGKRDAGHGQIS--HKMAYE 85
EE P L + + K QFFGLMGKR G I K AY+
Sbjct: 41 EEGAGPSIQLQLQEVKTGKASQFFGLMGKRVGGRPLIQPRRKKAYQ 86
>gi|117938264 tachykinin 4 isoform alpha-2 [Homo sapiens]
Length = 107
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 60 KPQQFFGLMGKRDAGHGQIS--HKMAYE 85
K QFFGLMGKR G I K AY+
Sbjct: 53 KASQFFGLMGKRVGGRPLIQPRRKKAYQ 80
>gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens]
Length = 4753
Score = 26.9 bits (58), Expect = 3.5
Identities = 16/66 (24%), Positives = 29/66 (43%)
Query: 21 EIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPKPQQFFGLMGKRDAGHGQISH 80
E+ + +L W D+ +S+ EE EP+ + R++ P + ISH
Sbjct: 2707 EVESEGELAQWEDFSNSNSETEEEEEPYGLQVARVSNSRDPSLTPSIGPVSRGMKESISH 2766
Query: 81 KMAYER 86
K+ E+
Sbjct: 2767 KIRQEK 2772
>gi|41406057 amyloid beta A4 protein isoform c precursor [Homo
sapiens]
Length = 695
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 20 EEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQR 54
EE A+DD D D D+++EE EP+E +R
Sbjct: 238 EEEEADDD----EDDEDGDEVEEEAEEPYEEATER 268
>gi|41406055 amyloid beta A4 protein isoform b precursor [Homo
sapiens]
Length = 751
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 20 EEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQR 54
EE A+DD D D D+++EE EP+E +R
Sbjct: 238 EEEEADDD----EDDEDGDEVEEEAEEPYEEATER 268
>gi|4502167 amyloid beta A4 protein isoform a precursor [Homo
sapiens]
Length = 770
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 20 EEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQR 54
EE A+DD D D D+++EE EP+E +R
Sbjct: 238 EEEEADDD----EDDEDGDEVEEEAEEPYEEATER 268
>gi|209915570 amyloid beta A4 protein isoform e precursor [Homo
sapiens]
Length = 639
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 20 EEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQR 54
EE A+DD D D D+++EE EP+E +R
Sbjct: 182 EEEEADDD----EDDEDGDEVEEEAEEPYEEATER 212
>gi|209915573 amyloid beta A4 protein isoform f precursor [Homo
sapiens]
Length = 714
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 20 EEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQR 54
EE A+DD D D D+++EE EP+E +R
Sbjct: 182 EEEEADDD----EDDEDGDEVEEEAEEPYEEATER 212
>gi|39753957 lamina-associated polypeptide 1B [Homo sapiens]
Length = 583
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 35 YDSDQIKEELPEPFEHLLQRIARRPKPQQ 63
+ SD KEE+ E +L R R+P+PQ+
Sbjct: 90 FRSDSAKEEVRESAYYLRSRQRRQPRPQE 118
>gi|117938258 tachykinin 4 isoform beta [Homo sapiens]
Length = 96
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 60 KPQQFFGLMGKRDAGHGQISH 80
K QFFGLMGKR G Q+ H
Sbjct: 53 KASQFFGLMGKR-VGAYQLEH 72
>gi|224809582 RAP1 GTPase activating protein isoform c [Homo
sapiens]
Length = 663
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 42 EELPEPFEHLLQRIARRPKPQQFFGLMGKRDAGHGQISHKMAY 84
EE P F L+ + ++ K Q F G G D HGQ + Y
Sbjct: 215 EESPA-FVEFLEFLGQKVKLQDFKGFRGGLDVTHGQTGTESVY 256
>gi|224809578 RAP1 GTPase activating protein isoform a [Homo
sapiens]
Length = 727
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 42 EELPEPFEHLLQRIARRPKPQQFFGLMGKRDAGHGQISHKMAY 84
EE P F L+ + ++ K Q F G G D HGQ + Y
Sbjct: 279 EESPA-FVEFLEFLGQKVKLQDFKGFRGGLDVTHGQTGTESVY 320
>gi|224809573 RAP1 GTPase activating protein isoform b [Homo
sapiens]
Length = 681
Score = 26.2 bits (56), Expect = 6.0
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 42 EELPEPFEHLLQRIARRPKPQQFFGLMGKRDAGHGQISHKMAY 84
EE P F L+ + ++ K Q F G G D HGQ + Y
Sbjct: 215 EESPA-FVEFLEFLGQKVKLQDFKGFRGGLDVTHGQTGTESVY 256
>gi|29789403 PDZ domain containing 8 [Homo sapiens]
Length = 1154
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 42 EELPEPFEHLLQRIARRPKPQQFFGLMGKRDAGH 75
E+ EP HL++ ++ PK +QF G MG + H
Sbjct: 810 EKEKEP--HLVEEVSVLPKEEQFVGQMGLTENKH 841
>gi|117938262 tachykinin 4 isoform delta [Homo sapiens]
Length = 76
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 60 KPQQFFGLMGKRDAG 74
K QFFGLMGKR G
Sbjct: 53 KASQFFGLMGKRVGG 67
>gi|117938260 tachykinin 4 isoform gamma [Homo sapiens]
Length = 87
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 60 KPQQFFGLMGKRDAG 74
K QFFGLMGKR G
Sbjct: 53 KASQFFGLMGKRVGG 67
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,617,842
Number of Sequences: 37866
Number of extensions: 155844
Number of successful extensions: 374
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 21
length of query: 96
length of database: 18,247,518
effective HSP length: 67
effective length of query: 29
effective length of database: 15,710,496
effective search space: 455604384
effective search space used: 455604384
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.