Guide to the Human Genome
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Name: TAC4 Sequence: fasta or formatted (107aa) NCBI GI: 117938264
Description:

tachykinin 4 isoform alpha-2

Referenced in:

Peptide and Protein G-coupled Signals

Other entries for this name:
alt prot [113aa] tachykinin 4 isoform alpha
alt prot [96aa] tachykinin 4 isoform beta
alt prot [87aa] tachykinin 4 isoform gamma
alt prot [76aa] tachykinin 4 isoform delta
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5          7           1
 C cysteine            1.9          2           1
 D aspartate           1.9          2           1
 E glutamate          11.2         12           2
 F phenylalanine       3.7          4           2
 G glycine            13.1         14           2
 H histidine           0.9          1           1
 I isoleucine          1.9          2           1
 K lysine              5.6          6           2
 L leucine            15.0         16           4
 M methionine          2.8          3           1
 N asparagine          0.0          0           0
 P proline             3.7          4           1
 Q glutamine           8.4          9           1
 R arginine            5.6          6           2
 S serine              5.6          6           1
 T threonine           6.5          7           1
 V valine              3.7          4           1
 W tryptophan          0.9          1           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tachykinin 4 isoform alpha-2 
TAC4                  0.963   tachykinin 4 isoform alpha 
TAC4                  0.837   tachykinin 4 isoform beta 
TAC4                  0.726   tachykinin 4 isoform gamma 
TAC4                  0.589   tachykinin 4 isoform delta 
TAC1                  0.068   tachykinin 1 isoform gamma precursor 
TAC1                  0.016   tachykinin 1 isoform beta precursor 
LOC730079             0.016   PREDICTED: similar to hCG1807128 
LOC730079             0.016   PREDICTED: similar to hCG1807128 
LOC730079             0.016   PREDICTED: similar to hCG1807128 
TAC1                  0.011   tachykinin 1 isoform delta precursor 
SETBP1                0.005   SET binding protein 1 isoform b 
SETBP1                0.005   SET binding protein 1 isoform a 
IQSEC3                0.005   IQ motif and Sec7 domain 3 
TMEM5                 0.005   transmembrane protein 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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