Guide to the Human Genome
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Name: TAC4 Sequence: fasta or formatted (113aa) NCBI GI: 117938256
Description:

tachykinin 4 isoform alpha

Referenced in:

Peptide and Protein G-coupled Signals

Other entries for this name:
alt prot [96aa] tachykinin 4 isoform beta
alt prot [87aa] tachykinin 4 isoform gamma
alt prot [76aa] tachykinin 4 isoform delta
alt prot [107aa] tachykinin 4 isoform alpha-2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1          8           1
 C cysteine            1.8          2           1
 D aspartate           1.8          2           1
 E glutamate          11.5         13           2
 F phenylalanine       3.5          4           2
 G glycine            12.4         14           2
 H histidine           0.9          1           1
 I isoleucine          2.7          3           1
 K lysine              5.3          6           2
 L leucine            15.0         17           4
 M methionine          2.7          3           1
 N asparagine          0.0          0           0
 P proline             3.5          4           1
 Q glutamine           8.0          9           1
 R arginine            5.3          6           2
 S serine              5.3          6           1
 T threonine           6.2          7           1
 V valine              5.3          6           1
 W tryptophan          0.9          1           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tachykinin 4 isoform alpha 
TAC4                  0.920   tachykinin 4 isoform alpha-2 
TAC4                  0.764   tachykinin 4 isoform beta 
TAC4                  0.663   tachykinin 4 isoform gamma 
TAC4                  0.533   tachykinin 4 isoform delta 
TAC1                  0.070   tachykinin 1 isoform gamma precursor 
TAC1                  0.020   tachykinin 1 isoform beta precursor 
TAC1                  0.015   tachykinin 1 isoform delta precursor 
CTBP2                 0.010   C-terminal binding protein 2 isoform 1 
CTBP2                 0.010   C-terminal binding protein 2 isoform 1 
CTBP2                 0.010   C-terminal binding protein 2 isoform 2 
CHD5                  0.010   chromodomain helicase DNA binding protein 5 
CTBP1                 0.005   C-terminal binding protein 1 isoform 2 
CTBP1                 0.005   C-terminal binding protein 1 isoform 1 
SCAF1                 0.005   SR-related CTD-associated factor 1 
USP9Y                 0.005   ubiquitin specific protease 9, Y-linked 
USP9X                 0.005   ubiquitin specific protease 9, X-linked isoform 4 [...
USP9X                 0.005   ubiquitin specific protease 9, X-linked isoform 3 [...
IQSEC3                0.005   IQ motif and Sec7 domain 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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