Guide to the Human Genome
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Name: TAC1 Sequence: fasta or formatted (129aa) NCBI GI: 4507341
Description:

tachykinin 1 isoform beta precursor

Referenced in:

Peptide and Protein G-coupled Signals

Other entries for this name:
alt prot [111aa] tachykinin 1 isoform alpha precursor
alt prot [114aa] tachykinin 1 isoform gamma precursor
alt prot [96aa] tachykinin 1 isoform delta precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         11           1
 C cysteine            0.0          0           0
 D aspartate           6.2          8           2
 E glutamate           7.0          9           2
 F phenylalanine       5.4          7           2
 G glycine             5.4          7           1
 H histidine           3.1          4           1
 I isoleucine          4.7          6           1
 K lysine              7.0          9           1
 L leucine            10.9         14           2
 M methionine          3.1          4           1
 N asparagine          3.1          4           1
 P proline             3.1          4           1
 Q glutamine           6.2          8           2
 R arginine            7.8         10           3
 S serine              7.0          9           2
 T threonine           1.6          2           1
 V valine              4.7          6           1
 W tryptophan          1.6          2           1
 Y tyrosine            3.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tachykinin 1 isoform beta precursor 
TAC1                  0.843   tachykinin 1 isoform gamma precursor 
TAC1                  0.797   tachykinin 1 isoform alpha precursor 
TAC1                  0.644   tachykinin 1 isoform delta precursor 
TAC4                  0.017   tachykinin 4 isoform alpha 
ACE                   0.013   angiotensin I converting enzyme 1 isoform 1 precursor...
TAC4                  0.013   tachykinin 4 isoform alpha-2 
TAC4                  0.013   tachykinin 4 isoform beta 
APP                   0.008   amyloid beta A4 protein isoform c precursor 
APP                   0.008   amyloid beta A4 protein isoform b precursor 
APP                   0.008   amyloid beta A4 protein isoform a precursor 
APP                   0.008   amyloid beta A4 protein isoform e precursor 
APP                   0.008   amyloid beta A4 protein isoform f precursor 
TOR1AIP1              0.008   lamina-associated polypeptide 1B 
RBM44                 0.004   RNA binding motif protein 44 
R3HDM1                0.004   R3H domain containing 1 
SON                   0.004   SON DNA-binding protein isoform F 
SON                   0.004   SON DNA-binding protein isoform B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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