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Search of human proteins with 7706212
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7706212 TAF9 RNA polymerase II, TATA box binding
protein-associated factor isoform b [Homo sapiens]
(172 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7706212 TAF9 RNA polymerase II, TATA box binding protein-asso... 359 e-100
gi|62865612 TAF9 RNA polymerase II, TATA box binding protein-ass... 342 7e-95
gi|45643125 nuclear VCP-like isoform 2 [Homo sapiens] 37 0.008
gi|45643123 nuclear VCP-like isoform 1 [Homo sapiens] 37 0.008
gi|28144897 adenylate kinase 5 isoform 1 [Homo sapiens] 36 0.019
gi|28144899 adenylate kinase 5 isoform 2 [Homo sapiens] 36 0.019
gi|153792148 threonine synthase-like 1 [Homo sapiens] 36 0.019
gi|237858799 adenylate kinase domain containing 1 isoform 1 [Hom... 35 0.024
gi|42476028 ATPase family, AAA domain containing 3A [Homo sapiens] 35 0.032
gi|4506431 RAS p21 protein activator 1 isoform 1 [Homo sapiens] 35 0.042
gi|12545406 RAS p21 protein activator 1 isoform 2 [Homo sapiens] 35 0.042
gi|31742536 fidgetin-like 1 [Homo sapiens] 35 0.042
gi|112789543 fidgetin-like 1 [Homo sapiens] 35 0.042
gi|75677353 AAA-ATPase TOB3 [Homo sapiens] 34 0.071
gi|194018490 ATPase family, AAA domain containing 3C [Homo sapiens] 34 0.071
gi|62177112 katanin p60 subunit A-like 1 [Homo sapiens] 33 0.16
gi|14149767 katanin p60 subunit A-like 1 [Homo sapiens] 33 0.16
gi|31377644 ATPase family, AAA domain containing 1 [Homo sapiens] 33 0.16
gi|157671927 spermatogenesis associated 5 [Homo sapiens] 32 0.27
gi|4502011 adenylate kinase 1 [Homo sapiens] 32 0.35
gi|19923437 adenylate kinase 3 [Homo sapiens] 32 0.35
gi|24415404 MDN1, midasin homolog [Homo sapiens] 31 0.46
gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens] 31 0.60
gi|18426904 Werner helicase interacting protein isoform 2 [Homo ... 31 0.60
gi|18426902 Werner helicase interacting protein isoform 1 [Homo ... 31 0.60
gi|5802970 AFG3 ATPase family gene 3-like 2 [Homo sapiens] 31 0.60
gi|40806170 spastin isoform 2 [Homo sapiens] 30 0.79
gi|11875211 spastin isoform 1 [Homo sapiens] 30 0.79
gi|148727333 adenylate kinase 7 [Homo sapiens] 30 0.79
gi|31581534 tRNA isopentenyltransferase 1 [Homo sapiens] 30 0.79
>gi|7706212 TAF9 RNA polymerase II, TATA box binding
protein-associated factor isoform b [Homo sapiens]
Length = 172
Score = 359 bits (921), Expect = e-100
Identities = 172/172 (100%), Positives = 172/172 (100%)
Query: 1 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDR 60
MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDR
Sbjct: 1 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDR 60
Query: 61 VVDELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNI 120
VVDELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNI
Sbjct: 61 VVDELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNI 120
Query: 121 QCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQWIKDHNS 172
QCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQWIKDHNS
Sbjct: 121 QCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQWIKDHNS 172
>gi|62865612 TAF9 RNA polymerase II, TATA box binding
protein-associated factor isoform c [Homo sapiens]
Length = 169
Score = 342 bits (878), Expect = 7e-95
Identities = 163/163 (100%), Positives = 163/163 (100%)
Query: 10 GTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQM 69
GTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQM
Sbjct: 7 GTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQM 66
Query: 70 REGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLY 129
REGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLY
Sbjct: 67 REGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLY 126
Query: 130 EEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQWIKDHNS 172
EEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQWIKDHNS
Sbjct: 127 EEATASYKEEIVHQLPSNKPEELENNVDQILKWIEQWIKDHNS 169
>gi|45643125 nuclear VCP-like isoform 2 [Homo sapiens]
Length = 750
Score = 37.0 bits (84), Expect = 0.008
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 6 ILLTGTPGVGKTTLGKELASKSGLKYINV 34
+LL G PG GKT L K +A++SGL +I+V
Sbjct: 512 VLLAGPPGCGKTLLAKAVANESGLNFISV 540
>gi|45643123 nuclear VCP-like isoform 1 [Homo sapiens]
Length = 856
Score = 37.0 bits (84), Expect = 0.008
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 6 ILLTGTPGVGKTTLGKELASKSGLKYINV 34
+LL G PG GKT L K +A++SGL +I+V
Sbjct: 618 VLLAGPPGCGKTLLAKAVANESGLNFISV 646
>gi|28144897 adenylate kinase 5 isoform 1 [Homo sapiens]
Length = 562
Score = 35.8 bits (81), Expect = 0.019
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 6 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE 41
IL+ G PG GK T ++A + G +YI+VG+L R++
Sbjct: 135 ILVIGGPGSGKGTQSLKIAERYGFQYISVGELLRKK 170
Score = 33.1 bits (74), Expect = 0.12
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 6 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE 41
I + G PG GK T ++L K G +++ G+L REE
Sbjct: 379 IFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREE 414
>gi|28144899 adenylate kinase 5 isoform 2 [Homo sapiens]
Length = 536
Score = 35.8 bits (81), Expect = 0.019
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 6 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE 41
IL+ G PG GK T ++A + G +YI+VG+L R++
Sbjct: 109 ILVIGGPGSGKGTQSLKIAERYGFQYISVGELLRKK 144
Score = 33.1 bits (74), Expect = 0.12
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 6 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE 41
I + G PG GK T ++L K G +++ G+L REE
Sbjct: 353 IFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREE 388
>gi|153792148 threonine synthase-like 1 [Homo sapiens]
Length = 743
Score = 35.8 bits (81), Expect = 0.019
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 8/55 (14%)
Query: 5 NILLTGTPGVGKTTLGKELASKSGLKYINVGD--------LAREEQLYDGYDEEY 51
NI+L G PG GKTT+G+ + K G I+V D ++ E+L D +E++
Sbjct: 57 NIILMGPPGAGKTTVGRIIGQKLGCCVIDVDDDILEKTWNMSVSEKLQDVGNEQF 111
>gi|237858799 adenylate kinase domain containing 1 isoform 1 [Homo
sapiens]
Length = 1911
Score = 35.4 bits (80), Expect = 0.024
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 6 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAR 39
I++ G P GKTT+ K++ S+ GLK++++G R
Sbjct: 1414 IIIVGPPKSGKTTVAKKITSEYGLKHLSIGGALR 1447
>gi|42476028 ATPase family, AAA domain containing 3A [Homo sapiens]
Length = 634
Score = 35.0 bits (79), Expect = 0.032
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 2 LLPNILLTGTPGVGKTTLGKELASKSGLKY--INVGDLA 38
L NIL+ G PG GKT K+LA SG+ Y + GD+A
Sbjct: 392 LYRNILMYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVA 430
>gi|4506431 RAS p21 protein activator 1 isoform 1 [Homo sapiens]
Length = 1047
Score = 34.7 bits (78), Expect = 0.042
Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 28/123 (22%)
Query: 28 GLKYINVGDLA---REEQLYDGYDEEYDCPILDEDRVVDE-------------------L 65
G Y ++GD+ R+EQ+ +GY + P+ D+++V+++
Sbjct: 413 GRYYNSIGDIIDHYRKEQIVEGYYLKEPVPMQDQEQVLNDTVDGKEIYNTIRRKTKDAFY 472
Query: 66 DNQMREGGVIVDYHGCDFFPERWFHIVFVLR-TDTNVLYERLETRGYNEKKLTDNIQCEI 124
N +++G ++ G +RW ++ F+L +D ++Y E R K L D C +
Sbjct: 473 KNIVKKGYLLKKGKG-----KRWKNLYFILEGSDAQLIYFESEKRATKPKGLIDLSVCSV 527
Query: 125 FQV 127
+ V
Sbjct: 528 YVV 530
>gi|12545406 RAS p21 protein activator 1 isoform 2 [Homo sapiens]
Length = 870
Score = 34.7 bits (78), Expect = 0.042
Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 28/123 (22%)
Query: 28 GLKYINVGDLA---REEQLYDGYDEEYDCPILDEDRVVDE-------------------L 65
G Y ++GD+ R+EQ+ +GY + P+ D+++V+++
Sbjct: 236 GRYYNSIGDIIDHYRKEQIVEGYYLKEPVPMQDQEQVLNDTVDGKEIYNTIRRKTKDAFY 295
Query: 66 DNQMREGGVIVDYHGCDFFPERWFHIVFVLR-TDTNVLYERLETRGYNEKKLTDNIQCEI 124
N +++G ++ G +RW ++ F+L +D ++Y E R K L D C +
Sbjct: 296 KNIVKKGYLLKKGKG-----KRWKNLYFILEGSDAQLIYFESEKRATKPKGLIDLSVCSV 350
Query: 125 FQV 127
+ V
Sbjct: 351 YVV 353
>gi|31742536 fidgetin-like 1 [Homo sapiens]
Length = 674
Score = 34.7 bits (78), Expect = 0.042
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 6 ILLTGTPGVGKTTLGKELASKSGLKYINV 34
ILL G PG GKT +GK +AS+SG + ++
Sbjct: 437 ILLFGPPGTGKTLIGKCIASQSGATFFSI 465
>gi|112789543 fidgetin-like 1 [Homo sapiens]
Length = 674
Score = 34.7 bits (78), Expect = 0.042
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 6 ILLTGTPGVGKTTLGKELASKSGLKYINV 34
ILL G PG GKT +GK +AS+SG + ++
Sbjct: 437 ILLFGPPGTGKTLIGKCIASQSGATFFSI 465
>gi|75677353 AAA-ATPase TOB3 [Homo sapiens]
Length = 648
Score = 33.9 bits (76), Expect = 0.071
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 2 LLPNILLTGTPGVGKTTLGKELASKSGLKY--INVGDLA 38
L +ILL G PG GKT K+LA SG+ Y + GD+A
Sbjct: 344 LYRHILLYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVA 382
>gi|194018490 ATPase family, AAA domain containing 3C [Homo sapiens]
Length = 411
Score = 33.9 bits (76), Expect = 0.071
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 2 LLPNILLTGTPGVGKTTLGKELASKSGLKY--INVGDLA 38
L +ILL G PG GKT K+LA SG+ Y + GD+A
Sbjct: 169 LYRHILLYGPPGTGKTLFAKKLALHSGMDYAIMTGGDVA 207
>gi|62177112 katanin p60 subunit A-like 1 [Homo sapiens]
Length = 490
Score = 32.7 bits (73), Expect = 0.16
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 6 ILLTGTPGVGKTTLGKELASKSGLKYINV 34
+L+ G PG GKT L K +A++ G + NV
Sbjct: 244 VLMVGPPGTGKTMLAKAVATECGTTFFNV 272
>gi|14149767 katanin p60 subunit A-like 1 [Homo sapiens]
Length = 490
Score = 32.7 bits (73), Expect = 0.16
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 6 ILLTGTPGVGKTTLGKELASKSGLKYINV 34
+L+ G PG GKT L K +A++ G + NV
Sbjct: 244 VLMVGPPGTGKTMLAKAVATECGTTFFNV 272
>gi|31377644 ATPase family, AAA domain containing 1 [Homo sapiens]
Length = 361
Score = 32.7 bits (73), Expect = 0.16
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 6 ILLTGTPGVGKTTLGKELASKSGLKYINV 34
+LL G PG GKT + K A ++G ++IN+
Sbjct: 129 VLLYGPPGCGKTLIAKATAKEAGCRFINL 157
>gi|157671927 spermatogenesis associated 5 [Homo sapiens]
Length = 893
Score = 32.0 bits (71), Expect = 0.27
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 6 ILLTGTPGVGKTTLGKELASKSGLKYINV 34
+LL G PG KT + K LA++SGL ++ +
Sbjct: 664 VLLYGPPGCSKTMIAKALANESGLNFLAI 692
Score = 26.9 bits (58), Expect = 8.7
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 6 ILLTGTPGVGKTTLGKELASKSGLKYINV 34
+LL G PG GKT + + +A++ G Y++V
Sbjct: 390 VLLYGPPGTGKTMIARAVANEVG-AYVSV 417
>gi|4502011 adenylate kinase 1 [Homo sapiens]
Length = 194
Score = 31.6 bits (70), Expect = 0.35
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 6 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE 41
I + G PG GK T +++ K G +++ GDL R E
Sbjct: 11 IFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSE 46
>gi|19923437 adenylate kinase 3 [Homo sapiens]
Length = 227
Score = 31.6 bits (70), Expect = 0.35
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 7 LLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQL 43
++ G PG GK T+ + + LK+++ GDL R+ L
Sbjct: 11 VIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNML 47
>gi|24415404 MDN1, midasin homolog [Homo sapiens]
Length = 5596
Score = 31.2 bits (69), Expect = 0.46
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 6 ILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYD 45
ILL G+PGVGKT+L LA SG + + +L+ + + D
Sbjct: 1749 ILLEGSPGVGKTSLVGALAKASGNTLVRI-NLSEQTDITD 1787
>gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens]
Length = 980
Score = 30.8 bits (68), Expect = 0.60
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 6 ILLTGTPGVGKTTLGKELASKSGLKYINV 34
+LL G PG GKT L K +A++ L +++V
Sbjct: 740 LLLHGPPGTGKTLLAKAVATECSLTFLSV 768
Score = 27.3 bits (59), Expect = 6.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 5 NILLTGTPGVGKTTLGKELASKSGLKYINV 34
++LL G PG GKTT+ S GL + V
Sbjct: 465 SVLLRGPPGCGKTTVVAAACSHLGLHLLKV 494
>gi|18426904 Werner helicase interacting protein isoform 2 [Homo
sapiens]
Length = 640
Score = 30.8 bits (68), Expect = 0.60
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 3 LPNILLTGTPGVGKTTLGKELASKS 27
+P+++L G PG GKTTL +AS S
Sbjct: 261 IPSLILWGPPGCGKTTLAHIIASNS 285
>gi|18426902 Werner helicase interacting protein isoform 1 [Homo
sapiens]
Length = 665
Score = 30.8 bits (68), Expect = 0.60
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 3 LPNILLTGTPGVGKTTLGKELASKS 27
+P+++L G PG GKTTL +AS S
Sbjct: 261 IPSLILWGPPGCGKTTLAHIIASNS 285
>gi|5802970 AFG3 ATPase family gene 3-like 2 [Homo sapiens]
Length = 797
Score = 30.8 bits (68), Expect = 0.60
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 7 LLTGTPGVGKTTLGKELASKSGLKYINV 34
+LTG PG GKT L K A ++ + +I V
Sbjct: 345 ILTGPPGTGKTLLAKATAGEANVPFITV 372
>gi|40806170 spastin isoform 2 [Homo sapiens]
Length = 584
Score = 30.4 bits (67), Expect = 0.79
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 6 ILLTGTPGVGKTTLGKELASKSGLKYINV 34
+LL G PG GKT L K +A++S + N+
Sbjct: 346 LLLFGPPGNGKTMLAKAVAAESNATFFNI 374
>gi|11875211 spastin isoform 1 [Homo sapiens]
Length = 616
Score = 30.4 bits (67), Expect = 0.79
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 6 ILLTGTPGVGKTTLGKELASKSGLKYINV 34
+LL G PG GKT L K +A++S + N+
Sbjct: 378 LLLFGPPGNGKTMLAKAVAAESNATFFNI 406
>gi|148727333 adenylate kinase 7 [Homo sapiens]
Length = 723
Score = 30.4 bits (67), Expect = 0.79
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 2 LLP-NILLTGTPGVGKTTLGKELASKSGLKYINVGDLARE 40
L+P I + G P VGK+++ KELA+ L +I + D+ E
Sbjct: 365 LMPIKICILGPPAVGKSSIAKELANYYKLHHIQLKDVISE 404
>gi|31581534 tRNA isopentenyltransferase 1 [Homo sapiens]
Length = 467
Score = 30.4 bits (67), Expect = 0.79
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 3 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYD 48
LP +++ G G GK+TL +L + G + ++ + Q+Y+G D
Sbjct: 23 LPLVVILGATGTGKSTLALQLGQRLGGEIVSADSM----QVYEGLD 64
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.139 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,956,503
Number of Sequences: 37866
Number of extensions: 304594
Number of successful extensions: 1044
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 959
Number of HSP's gapped (non-prelim): 99
length of query: 172
length of database: 18,247,518
effective HSP length: 95
effective length of query: 77
effective length of database: 14,650,248
effective search space: 1128069096
effective search space used: 1128069096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.