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Search of human proteins with 7705963
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7705963 RAB9B, member RAS oncogene family [Homo sapiens]
(201 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7705963 RAB9B, member RAS oncogene family [Homo sapiens] 415 e-116
gi|4759012 RAB9A, member RAS oncogene family [Homo sapiens] 327 3e-90
gi|34147513 RAB7, member RAS oncogene family [Homo sapiens] 210 7e-55
gi|38490537 RAB7B, member RAS oncogene family [Homo sapiens] 141 3e-34
gi|4758984 Ras-related protein Rab-11A [Homo sapiens] 137 5e-33
gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens] 135 3e-32
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa... 131 4e-31
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens] 131 4e-31
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens] 131 4e-31
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens] 127 5e-30
gi|10880989 RAB18, member RAS oncogene family [Homo sapiens] 127 5e-30
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens] 127 8e-30
gi|16933567 mel transforming oncogene [Homo sapiens] 125 2e-29
gi|19923260 RAB4A, member RAS oncogene family [Homo sapiens] 125 2e-29
gi|19923483 GTPase Rab14 [Homo sapiens] 124 4e-29
gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo sa... 124 5e-29
gi|116812567 RAB25 [Homo sapiens] 124 5e-29
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap... 123 1e-28
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens] 123 1e-28
gi|34485711 Ras-related protein Rab-27A [Homo sapiens] 121 5e-28
gi|34485709 Ras-related protein Rab-27A [Homo sapiens] 121 5e-28
gi|34485706 Ras-related protein Rab-27A [Homo sapiens] 121 5e-28
gi|19923264 Ras-related protein Rab-27A [Homo sapiens] 121 5e-28
gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo sa... 120 6e-28
gi|21361418 RAB30, member RAS oncogene family [Homo sapiens] 120 8e-28
gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens] 120 1e-27
gi|34485714 Ras-related protein Rab-23 [Homo sapiens] 118 4e-27
gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens] 118 4e-27
gi|34485716 Ras-related protein Rab-23 [Homo sapiens] 118 4e-27
gi|46361978 RAB26, member RAS oncogene family [Homo sapiens] 117 5e-27
>gi|7705963 RAB9B, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 415 bits (1067), Expect = e-116
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MSGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQI 60
MSGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQI
Sbjct: 1 MSGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQI 60
Query: 61 WDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFV 120
WDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFV
Sbjct: 61 WDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFV 120
Query: 121 VLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLE 180
VLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLE
Sbjct: 121 VLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLE 180
Query: 181 HCMLGHTIDLNSGSKAGSSCC 201
HCMLGHTIDLNSGSKAGSSCC
Sbjct: 181 HCMLGHTIDLNSGSKAGSSCC 201
>gi|4759012 RAB9A, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 327 bits (839), Expect = 3e-90
Identities = 153/201 (76%), Positives = 175/201 (87%)
Query: 1 MSGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQI 60
M+GKS L KVILLGDGGVGKSSLMNRYVTNKFD+Q FHTIGVEFLN+DLEVDG FVT+QI
Sbjct: 1 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQI 60
Query: 61 WDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFV 120
WDTAGQERF+SLRTPFYRG+DCCLLTFSVDD QSF+NL NW+KEFIYYADVK+PE FPFV
Sbjct: 61 WDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFV 120
Query: 121 VLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLE 180
+LGNK+D +RQV+TEEAQ WC +NGDYPY ETSAKD TNV AFEEAVR+VLA E++ +
Sbjct: 121 ILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSD 180
Query: 181 HCMLGHTIDLNSGSKAGSSCC 201
H + T++L+ K SSCC
Sbjct: 181 HLIQTDTVNLHRKPKPSSSCC 201
>gi|34147513 RAB7, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 210 bits (534), Expect = 7e-55
Identities = 105/203 (51%), Positives = 135/203 (66%), Gaps = 3/203 (1%)
Query: 2 SGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIW 61
S K +LLKVI+LGD GVGK+SLMN+YV KF +Q TIG +FL +++ VD R VT+QIW
Sbjct: 3 SRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 62
Query: 62 DTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVV 121
DTAGQERF+SL FYRGADCC+L F V +F+ L +W+ EF+ A +DPE+FPFVV
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 122
Query: 122 LGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLE- 180
LGNK+D E+RQV T+ AQ WC + PY ETSAK+ NV AF+ R L E ++E
Sbjct: 123 LGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 182
Query: 181 --HCMLGHTIDLNSGSKAGSSCC 201
+D N +KA + C
Sbjct: 183 YNEFPEPIKLDKNDRAKASAESC 205
>gi|38490537 RAB7B, member RAS oncogene family [Homo sapiens]
Length = 199
Score = 141 bits (356), Expect = 3e-34
Identities = 81/198 (40%), Positives = 118/198 (59%), Gaps = 3/198 (1%)
Query: 4 KSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDT 63
K + LK+I++G GVGK+SL ++YV F + T+G L++ + + + LQIWDT
Sbjct: 5 KKVDLKLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDT 64
Query: 64 AGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLG 123
GQERF+S+ + FY+G+D C+L F V D +SFE L W+ + + V + +P V+LG
Sbjct: 65 GGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGD-VLAKIVPMEQSYPMVLLG 123
Query: 124 NKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLEHCM 183
NK+D DR+V E AQ WC E D PY E SAK+D NV AFE + L+ + +
Sbjct: 124 NKIDLADRKVPQEVAQGWCREK-DIPYFEVSAKNDINVVQAFEMLASRALSRYQSILENH 182
Query: 184 LGHTIDLNSGSKAGSSCC 201
L +I L S ++ S CC
Sbjct: 183 LTESIKL-SPDQSRSRCC 199
>gi|4758984 Ras-related protein Rab-11A [Homo sapiens]
Length = 216
Score = 137 bits (346), Expect = 5e-33
Identities = 70/173 (40%), Positives = 112/173 (64%), Gaps = 6/173 (3%)
Query: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
L KV+L+GD GVGKS+L++R+ N+F+ ++ TIGVEF R ++VDG+ + QIWDTAGQ
Sbjct: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70
Query: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
ER++++ + +YRGA LL + + ++EN+ W KE +AD + +++GNK
Sbjct: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKS 126
Query: 127 D-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQ 178
D + R V T+EA+ + +NG ++ETSA D TNV AF+ + ++ + Q
Sbjct: 127 DLRHLRAVPTDEARAFAEKNG-LSFIETSALDSTNVEAAFQTILTEIYRIVSQ 178
>gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 135 bits (339), Expect = 3e-32
Identities = 69/173 (39%), Positives = 111/173 (64%), Gaps = 6/173 (3%)
Query: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
L KV+L+GD GVGKS+L++R+ N+F+ ++ TIGVEF R ++VDG+ + QIWDTAGQ
Sbjct: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 70
Query: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
ER++++ + +YRGA LL + + ++EN+ W KE +AD + +++GNK
Sbjct: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKS 126
Query: 127 D-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQ 178
D + R V T+EA+ + E + ++ETSA D TNV AF+ + ++ + Q
Sbjct: 127 DLRHLRAVPTDEARAFA-EKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQ 178
>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
family [Homo sapiens]
Length = 327
Score = 131 bits (329), Expect = 4e-31
Identities = 70/168 (41%), Positives = 104/168 (61%), Gaps = 6/168 (3%)
Query: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
L K++L+GD GVGK+ L+ R+ + F++ TIG++F R ++++G+ + LQ+WDTAGQ
Sbjct: 132 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQ 191
Query: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
ERFK++ T +YRGA +L + + D +SFEN+ NW K + A EH ++LGNK
Sbjct: 192 ERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASA-GVEH---LLLGNKC 247
Query: 127 DKE-DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173
D E R+V E+A E+G + ETSAK NV AF R +L
Sbjct: 248 DMEAKRKVQKEQADKLAREHG-IRFFETSAKSSMNVDEAFSSLARDIL 294
>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 131 bits (329), Expect = 4e-31
Identities = 70/168 (41%), Positives = 104/168 (61%), Gaps = 6/168 (3%)
Query: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
L K++L+GD GVGK+ L+ R+ + F++ TIG++F R ++++G+ + LQ+WDTAGQ
Sbjct: 132 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQ 191
Query: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
ERFK++ T +YRGA +L + + D +SFEN+ NW K + A EH ++LGNK
Sbjct: 192 ERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASA-GVEH---LLLGNKC 247
Query: 127 DKE-DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173
D E R+V E+A E+G + ETSAK NV AF R +L
Sbjct: 248 DMEAKRKVQKEQADKLAREHG-IRFFETSAKSSMNVDEAFSSLARDIL 294
>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 131 bits (329), Expect = 4e-31
Identities = 70/168 (41%), Positives = 104/168 (61%), Gaps = 6/168 (3%)
Query: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
L K++L+GD GVGK+ L+ R+ + F++ TIG++F R ++++G+ + LQ+WDTAGQ
Sbjct: 132 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQ 191
Query: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
ERFK++ T +YRGA +L + + D +SFEN+ NW K + A EH ++LGNK
Sbjct: 192 ERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASA-GVEH---LLLGNKC 247
Query: 127 DKE-DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173
D E R+V E+A E+G + ETSAK NV AF R +L
Sbjct: 248 DMEAKRKVQKEQADKLAREHG-IRFFETSAKSSMNVDEAFSSLARDIL 294
>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 127 bits (320), Expect = 5e-30
Identities = 68/168 (40%), Positives = 101/168 (60%), Gaps = 6/168 (3%)
Query: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
L K++L+GD GVGK+ L+ R+ + F++ TIG++F R ++++G+ + LQ+WDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQ 67
Query: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
ERFK++ T +YRGA +L + + D +SFEN+ NW K A ++LGNK
Sbjct: 68 ERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVER----LLLGNKC 123
Query: 127 DKE-DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173
D E R+V E+A E+G + ETSAK NV AF R +L
Sbjct: 124 DMEAKRKVQKEQADKLAREHG-IRFFETSAKSSMNVDEAFSSLARDIL 170
>gi|10880989 RAB18, member RAS oncogene family [Homo sapiens]
Length = 206
Score = 127 bits (320), Expect = 5e-30
Identities = 73/199 (36%), Positives = 108/199 (54%), Gaps = 10/199 (5%)
Query: 8 LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
LK++++G+ GVGKSSL+ R+ + FD + TIGV+F + + VDG L IWDTAGQE
Sbjct: 9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 68
Query: 68 RFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD 127
RF++L +YRGA +L + V R +F L NW E Y D + +++GNK+D
Sbjct: 69 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVN---MLVGNKID 125
Query: 128 KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAV------EEQLEH 181
KE+R+V E + ++ ++E SAK V AFEE V +++ E Q +
Sbjct: 126 KENREVDRNEGLKFARKH-SMLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNKG 184
Query: 182 CMLGHTIDLNSGSKAGSSC 200
L H + G G C
Sbjct: 185 VKLSHREEGQGGGACGGYC 203
>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 127 bits (318), Expect = 8e-30
Identities = 68/168 (40%), Positives = 105/168 (62%), Gaps = 6/168 (3%)
Query: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
L K++L+GD GVGK+ L+ R+ + F++ TIG++F R +E+DG+ + LQIWDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ 67
Query: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
ERF+++ T +YRGA +L + + + +SF+N+ NW + +A D E ++LGNK
Sbjct: 68 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHAS-SDVER---MILGNKC 123
Query: 127 DKED-RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173
D D RQV+ E + ++ G +LETSAK NV AF R ++
Sbjct: 124 DMNDKRQVSKERGEKLAIDYG-IKFLETSAKSSANVEEAFFTLARDIM 170
>gi|16933567 mel transforming oncogene [Homo sapiens]
Length = 207
Score = 125 bits (314), Expect = 2e-29
Identities = 70/176 (39%), Positives = 112/176 (63%), Gaps = 7/176 (3%)
Query: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
L K++L+GD GVGK+ ++ R+ + F+S TIG++F R +E+DG+ + LQIWDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 67
Query: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
ERF+++ T +YRGA +L + + + +SF+N+ NW + +A D E ++LGNK
Sbjct: 68 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA-DVEK---MILGNKC 123
Query: 127 DKED-RQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLA-VEEQLE 180
D D RQV+ E + ++ G ++ETSAK + NV AF R + A ++++LE
Sbjct: 124 DVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAKMDKKLE 178
>gi|19923260 RAB4A, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 125 bits (314), Expect = 2e-29
Identities = 67/168 (39%), Positives = 104/168 (61%), Gaps = 6/168 (3%)
Query: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
L K +++G+ G GKS L+++++ KF + HTIGVEF ++ + V G++V LQIWDTAGQ
Sbjct: 13 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 72
Query: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
ERF+S+ +YRGA LL + + R+++ L NW + A + ++ ++ GNK
Sbjct: 73 ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTD----ARMLASQNIVIILCGNKK 128
Query: 127 DKE-DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173
D + DR+VT EA + EN + +LETSA NV AF + R++L
Sbjct: 129 DLDADREVTFLEASRFAQEN-ELMFLETSALTGENVEEAFVQCARKIL 175
>gi|19923483 GTPase Rab14 [Homo sapiens]
Length = 215
Score = 124 bits (312), Expect = 4e-29
Identities = 70/169 (41%), Positives = 106/169 (62%), Gaps = 6/169 (3%)
Query: 5 SLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTA 64
S + K I++GD GVGKS L++++ KF + HTIGVEF R +EV G+ + LQIWDTA
Sbjct: 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTA 68
Query: 65 GQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGN 124
GQERF+++ +YRGA L+ + + R ++ +L +W + ++ +P + +++GN
Sbjct: 69 GQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTD---ARNLTNP-NTVIILIGN 124
Query: 125 KVDKE-DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172
K D E R VT EEA+ + ENG +LE SAK NV AF EA +++
Sbjct: 125 KADLEAQRDVTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKI 172
>gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo
sapiens]
Length = 216
Score = 124 bits (311), Expect = 5e-29
Identities = 81/206 (39%), Positives = 115/206 (55%), Gaps = 23/206 (11%)
Query: 6 LLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFH-TIGVEFLNRDLEVDGRFVTLQIWDTA 64
+L K IL+GD GVGK+SL+ ++ KF +F T+G+ F N+ + VDG V LQIWDTA
Sbjct: 21 VLHKTILVGDSGVGKTSLLVQFDQGKFIPGSFSATVGIGFTNKVVTVDGVRVKLQIWDTA 80
Query: 65 GQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGN 124
GQERF+S+ +YR A LL + + ++ SF+N+ W E YA ++LGN
Sbjct: 81 GQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQ----RDVVIMLLGN 136
Query: 125 KVD-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLEHCM 183
K D +R + +E+ +T E G P+LETSAK NV +AF LA+ ++L++
Sbjct: 137 KADMSSERVIRSEDGETLAREYG-VPFLETSAKTGMNVELAF-------LAIAKELKY-R 187
Query: 184 LGHTIDLNS--------GSKAGSSCC 201
GH D S K SSCC
Sbjct: 188 AGHQADEPSFQIRDYVESQKKRSSCC 213
>gi|116812567 RAB25 [Homo sapiens]
Length = 213
Score = 124 bits (311), Expect = 5e-29
Identities = 75/206 (36%), Positives = 121/206 (58%), Gaps = 14/206 (6%)
Query: 5 SLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTA 64
+ + KV+L+G+ GVGK++L++R+ N+F + TIGVEF R + + V QIWDTA
Sbjct: 10 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTA 69
Query: 65 GQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGN 124
G ER++++ + +YRGA LL F + Q++ + W KE +A+ +++GN
Sbjct: 70 GLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT----IVVMLVGN 125
Query: 125 KVD-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLA-VEEQLEHC 182
K D + R+V TEEA+ + EN +LETSA D TNV +AFE ++++ A V +Q ++
Sbjct: 126 KSDLSQAREVPTEEARMFA-ENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQRQNS 184
Query: 183 MLGHTIDLNS---GSKAG----SSCC 201
+ + I L S G + G +CC
Sbjct: 185 IRTNAITLGSAQAGQEPGPGEKRACC 210
>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
sapiens]
Length = 205
Score = 123 bits (308), Expect = 1e-28
Identities = 63/159 (39%), Positives = 98/159 (61%), Gaps = 4/159 (2%)
Query: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
L K++L+GD GVGKS L+ R+ + + TIGV+F R +E+DG+ + LQIWDTAGQ
Sbjct: 11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 70
Query: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
ERF+++ + +YRGA ++ + V D++SF N+ W +E YA E+ +++GNK
Sbjct: 71 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 126
Query: 127 DKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAF 165
D ++V ++ P+LETSAK+ TNV +F
Sbjct: 127 DLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 165
>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 123 bits (308), Expect = 1e-28
Identities = 63/159 (39%), Positives = 98/159 (61%), Gaps = 4/159 (2%)
Query: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
L K++L+GD GVGKS L+ R+ + + TIGV+F R +E+DG+ + LQIWDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
ERF+++ + +YRGA ++ + V D++S+ N+ W +E YA E+ +++GNK
Sbjct: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLVGNKS 123
Query: 127 DKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAF 165
D ++V ++ P+LETSAK+ TNV AF
Sbjct: 124 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAF 162
>gi|34485711 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 121 bits (303), Expect = 5e-28
Identities = 69/187 (36%), Positives = 108/187 (57%), Gaps = 16/187 (8%)
Query: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVD----------GRFV 56
L+K + LGD GVGK+S++ +Y KF+S+ T+G++F + + G+ +
Sbjct: 9 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRGQRI 68
Query: 57 TLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEH 116
LQ+WDTAGQERF+SL T F+R A LL F + + QSF N+ NW + +A ++P+
Sbjct: 69 HLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPD- 127
Query: 117 FPFVVLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVE 176
V+ GNK D ED++V EE E PY ETSA + TN++ A E + ++
Sbjct: 128 --IVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLIM--- 182
Query: 177 EQLEHCM 183
+++E C+
Sbjct: 183 KRMERCV 189
>gi|34485709 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 121 bits (303), Expect = 5e-28
Identities = 69/187 (36%), Positives = 108/187 (57%), Gaps = 16/187 (8%)
Query: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVD----------GRFV 56
L+K + LGD GVGK+S++ +Y KF+S+ T+G++F + + G+ +
Sbjct: 9 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRGQRI 68
Query: 57 TLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEH 116
LQ+WDTAGQERF+SL T F+R A LL F + + QSF N+ NW + +A ++P+
Sbjct: 69 HLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPD- 127
Query: 117 FPFVVLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVE 176
V+ GNK D ED++V EE E PY ETSA + TN++ A E + ++
Sbjct: 128 --IVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLIM--- 182
Query: 177 EQLEHCM 183
+++E C+
Sbjct: 183 KRMERCV 189
>gi|34485706 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 121 bits (303), Expect = 5e-28
Identities = 69/187 (36%), Positives = 108/187 (57%), Gaps = 16/187 (8%)
Query: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVD----------GRFV 56
L+K + LGD GVGK+S++ +Y KF+S+ T+G++F + + G+ +
Sbjct: 9 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRGQRI 68
Query: 57 TLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEH 116
LQ+WDTAGQERF+SL T F+R A LL F + + QSF N+ NW + +A ++P+
Sbjct: 69 HLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPD- 127
Query: 117 FPFVVLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVE 176
V+ GNK D ED++V EE E PY ETSA + TN++ A E + ++
Sbjct: 128 --IVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLIM--- 182
Query: 177 EQLEHCM 183
+++E C+
Sbjct: 183 KRMERCV 189
>gi|19923264 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 121 bits (303), Expect = 5e-28
Identities = 69/187 (36%), Positives = 108/187 (57%), Gaps = 16/187 (8%)
Query: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVD----------GRFV 56
L+K + LGD GVGK+S++ +Y KF+S+ T+G++F + + G+ +
Sbjct: 9 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRASGPDGATGRGQRI 68
Query: 57 TLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEH 116
LQ+WDTAGQERF+SL T F+R A LL F + + QSF N+ NW + +A ++P+
Sbjct: 69 HLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPD- 127
Query: 117 FPFVVLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVE 176
V+ GNK D ED++V EE E PY ETSA + TN++ A E + ++
Sbjct: 128 --IVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEMLLDLIM--- 182
Query: 177 EQLEHCM 183
+++E C+
Sbjct: 183 KRMERCV 189
>gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo
sapiens]
Length = 223
Score = 120 bits (302), Expect = 6e-28
Identities = 79/203 (38%), Positives = 112/203 (55%), Gaps = 23/203 (11%)
Query: 9 KVILLGDGGVGKSSLMNRYVTNKFDSQAF-HTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
KV+LLGD GVGK+ + ++ F S F T+G++F N+ + VDG V LQIWDTAGQE
Sbjct: 31 KVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQE 90
Query: 68 RFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD 127
RF+S+ +YR A LL + + ++ SF+N+ W E YA ++LGNK D
Sbjct: 91 RFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQ----RDVVIMLLGNKAD 146
Query: 128 -KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLEHCMLGH 186
+R + +E+ +T E G P+LETSAK NV +AF LA+ ++L++ GH
Sbjct: 147 MSSERVIRSEDGETLAREYG-VPFLETSAKTGMNVELAF-------LAIAKELKY-RAGH 197
Query: 187 TIDLNS--------GSKAGSSCC 201
D S K SSCC
Sbjct: 198 QADEPSFQIRDYVESQKKRSSCC 220
>gi|21361418 RAB30, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 120 bits (301), Expect = 8e-28
Identities = 65/178 (36%), Positives = 101/178 (56%), Gaps = 4/178 (2%)
Query: 1 MSGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQI 60
M L K++L+G+ GVGK+ L+ R+ F TIGV+F+ + +E++G V LQI
Sbjct: 3 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQI 62
Query: 61 WDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFV 120
WDTAGQERF+S+ +YR A+ +LT+ + +SF L W +E YA K V
Sbjct: 63 WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK----VITV 118
Query: 121 VLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQ 178
++GNK+D +R+ +++ E D YLETSAK+ NV F + ++++ Q
Sbjct: 119 LVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQ 176
>gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens]
Length = 213
Score = 120 bits (300), Expect = 1e-27
Identities = 67/168 (39%), Positives = 100/168 (59%), Gaps = 6/168 (3%)
Query: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
L K +++G G GKS L+++++ NKF + HTIGVEF +R + V G+ V LQIWDTAGQ
Sbjct: 8 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 67
Query: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
ERF+S+ +YRGA LL + + R+++ +L W + A + ++ GNK
Sbjct: 68 ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTD----ARTLASPNIVVILCGNKK 123
Query: 127 DKE-DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173
D + +R+VT EA + EN + +LETSA NV AF + R +L
Sbjct: 124 DLDPEREVTFLEASRFAQEN-ELMFLETSALTGENVEEAFLKCARTIL 170
>gi|34485714 Ras-related protein Rab-23 [Homo sapiens]
Length = 237
Score = 118 bits (295), Expect = 4e-27
Identities = 66/182 (36%), Positives = 107/182 (58%), Gaps = 14/182 (7%)
Query: 8 LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
+K++++G+G VGKSS++ RY F TIGV+FL R ++V+ V L +WDTAGQE
Sbjct: 10 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 69
Query: 68 RFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD 127
F ++ +YRGA C+L FS DR+SFE + +W+++ + A+V D P V++ NK+D
Sbjct: 70 EFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVV--AEVGD---IPTVLVQNKID 124
Query: 128 -KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFE-------EAVRQVLAVEEQL 179
+D + EEA+ + + TS K+D NV F+ + ++Q +A + +L
Sbjct: 125 LLDDSCIKNEEAEA-LAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAEDPEL 183
Query: 180 EH 181
H
Sbjct: 184 TH 185
>gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens]
Length = 200
Score = 118 bits (295), Expect = 4e-27
Identities = 68/203 (33%), Positives = 113/203 (55%), Gaps = 17/203 (8%)
Query: 6 LLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAG 65
LL K++L+GD GVGK+ ++ R+ + F++ TIG++F + +E+ G+ + LQIWDTAG
Sbjct: 8 LLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAG 67
Query: 66 QERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNK 125
QERF ++ T +YRGA +L + + + +SFEN+ W + +A+ E ++LGNK
Sbjct: 68 QERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHAN----EDVERMLLGNK 123
Query: 126 VDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAF----EEAVRQVLAVEEQLEH 181
D +D++V + + ETSAK + N+ AF E+ +R+ E E+
Sbjct: 124 CDMDDKRVVPKGKGGQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSEN 183
Query: 182 CMLGHTIDLNSGSKA---GSSCC 201
+D++SG S CC
Sbjct: 184 ------VDISSGGGVTGWKSKCC 200
>gi|34485716 Ras-related protein Rab-23 [Homo sapiens]
Length = 237
Score = 118 bits (295), Expect = 4e-27
Identities = 66/182 (36%), Positives = 107/182 (58%), Gaps = 14/182 (7%)
Query: 8 LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
+K++++G+G VGKSS++ RY F TIGV+FL R ++V+ V L +WDTAGQE
Sbjct: 10 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 69
Query: 68 RFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD 127
F ++ +YRGA C+L FS DR+SFE + +W+++ + A+V D P V++ NK+D
Sbjct: 70 EFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVV--AEVGD---IPTVLVQNKID 124
Query: 128 -KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFE-------EAVRQVLAVEEQL 179
+D + EEA+ + + TS K+D NV F+ + ++Q +A + +L
Sbjct: 125 LLDDSCIKNEEAEA-LAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAEDPEL 183
Query: 180 EH 181
H
Sbjct: 184 TH 185
>gi|46361978 RAB26, member RAS oncogene family [Homo sapiens]
Length = 256
Score = 117 bits (294), Expect = 5e-27
Identities = 73/195 (37%), Positives = 106/195 (54%), Gaps = 7/195 (3%)
Query: 9 KVILLGDGGVGKSSLMNRYVTNKFDSQAF-HTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
KV+L+GD GVGK+ L+ R+ F + F T+G++F N+ L+VDG V LQ+WDTAGQE
Sbjct: 65 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 124
Query: 68 RFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD 127
RF+S+ +YR A LL + V ++ SF+N+ W E YA ++LGNKVD
Sbjct: 125 RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ----HDVALMLLGNKVD 180
Query: 128 K-EDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLEHCMLGH 186
+R V E+ + E G P++ETSAK NV +AF +++ +
Sbjct: 181 SAHERVVKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAKELKQRSMKAPSEPRFR 239
Query: 187 TIDLNSGSKAGSSCC 201
D G+SCC
Sbjct: 240 LHDYVKREGRGASCC 254
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,168,077
Number of Sequences: 37866
Number of extensions: 291431
Number of successful extensions: 1232
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 798
Number of HSP's gapped (non-prelim): 251
length of query: 201
length of database: 18,247,518
effective HSP length: 97
effective length of query: 104
effective length of database: 14,574,516
effective search space: 1515749664
effective search space used: 1515749664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.