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Search of human proteins with 7705943
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7705943 hypothetical protein LOC10826 isoform 1 [Homo
sapiens]
(144 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7705943 hypothetical protein LOC10826 isoform 1 [Homo sapiens] 311 1e-85
gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo ... 36 0.010
gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo ... 36 0.010
gi|239745511 PREDICTED: hypothetical protein XP_002343508 [Homo ... 36 0.010
gi|14249428 leucine-rich repeats and calponin homology (CH) doma... 36 0.013
gi|7524363 paired box 8 isoform PAX8C [Homo sapiens] 31 0.31
gi|217416405 alanyl-tRNA synthetase domain containing 1 isoform ... 31 0.41
gi|217416402 alanyl-tRNA synthetase domain containing 1 isoform ... 31 0.41
gi|194097332 ephrin receptor EphB6 precursor [Homo sapiens] 30 0.54
gi|86793109 complement receptor 1 isoform S precursor [Homo sapi... 30 0.70
gi|86793036 complement receptor 1 isoform F precursor [Homo sapi... 30 0.70
gi|153792074 proline rich 12 [Homo sapiens] 30 0.70
gi|226693407 TBC1 domain family, member 3H [Homo sapiens] 29 1.2
gi|14149985 TBC1 domain family, member 3F [Homo sapiens] 29 1.2
gi|183583565 TBC1 domain family, member 3 [Homo sapiens] 29 1.2
gi|183583567 TBC1 domain family, member 3E [Homo sapiens] 29 1.2
gi|183583563 TBC1 domain family, member 3D [Homo sapiens] 29 1.2
gi|90577185 TBC1 domain family member 3C [Homo sapiens] 29 1.2
gi|157502205 TBC1 domain family, member 3G [Homo sapiens] 29 1.2
gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithora... 29 1.6
gi|90819233 myeloid/lymphoid or mixed-lineage leukemia (trithora... 29 1.6
gi|90819231 myeloid/lymphoid or mixed-lineage leukemia (trithora... 29 1.6
gi|149999613 TBC1 domain family, member 3B [Homo sapiens] 29 1.6
gi|140561027 CASK-interacting protein CIP98 isoform 2 [Homo sapi... 29 1.6
gi|140561024 CASK-interacting protein CIP98 isoform 1 [Homo sapi... 29 1.6
gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo ... 28 2.0
gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo ... 28 2.0
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap... 28 2.0
gi|217416407 alanyl-tRNA synthetase domain containing 1 isoform ... 28 2.0
gi|239755587 PREDICTED: hypothetical protein [Homo sapiens] 28 2.7
>gi|7705943 hypothetical protein LOC10826 isoform 1 [Homo sapiens]
Length = 144
Score = 311 bits (797), Expect = 1e-85
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MKWDLHGSLQHGHCSAVLSLLGSTSAMGCWVCWTTSMGLTPCSSRPRPTRDMSSCWASPR 60
MKWDLHGSLQHGHCSAVLSLLGSTSAMGCWVCWTTSMGLTPCSSRPRPTRDMSSCWASPR
Sbjct: 1 MKWDLHGSLQHGHCSAVLSLLGSTSAMGCWVCWTTSMGLTPCSSRPRPTRDMSSCWASPR 60
Query: 61 SLRASQTPQRGWSERQPKCHPGCPSAMGCRHGFLIAPNNLPPSATRPNDGTTRVEGRSAS 120
SLRASQTPQRGWSERQPKCHPGCPSAMGCRHGFLIAPNNLPPSATRPNDGTTRVEGRSAS
Sbjct: 61 SLRASQTPQRGWSERQPKCHPGCPSAMGCRHGFLIAPNNLPPSATRPNDGTTRVEGRSAS 120
Query: 121 RKSRAKDEAFFKLLPLMSLNGIRS 144
RKSRAKDEAFFKLLPLMSLNGIRS
Sbjct: 121 RKSRAKDEAFFKLLPLMSLNGIRS 144
>gi|239756545 PREDICTED: hypothetical protein XP_002344931 [Homo
sapiens]
Length = 427
Score = 36.2 bits (82), Expect = 0.010
Identities = 38/124 (30%), Positives = 49/124 (39%), Gaps = 23/124 (18%)
Query: 14 CSAVLSLLGSTSAMGCWVC---WTTSMGLTPCSSR-----PRPTRDMSSCW---ASPRSL 62
C V+ G A C C T+ P +R P + + C ASPR
Sbjct: 65 CLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSASPRLS 124
Query: 63 RASQTPQRGWSERQPKCHPGCPSAMGCRHGFLIAPNNLPPSATRPNDGTTRVEGRSASRK 122
+AS + R WS G S +G G + LPP+A P DG R GR SR
Sbjct: 125 KASSSSSRCWSR-------GPTSGLGATLGGTV----LPPAARTPRDG-LRDRGRLLSRN 172
Query: 123 SRAK 126
S A+
Sbjct: 173 STAR 176
>gi|239751065 PREDICTED: hypothetical protein XP_002347692 [Homo
sapiens]
Length = 537
Score = 36.2 bits (82), Expect = 0.010
Identities = 38/124 (30%), Positives = 49/124 (39%), Gaps = 23/124 (18%)
Query: 14 CSAVLSLLGSTSAMGCWVC---WTTSMGLTPCSSR-----PRPTRDMSSCW---ASPRSL 62
C V+ G A C C T+ P +R P + + C ASPR
Sbjct: 65 CLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSASPRLS 124
Query: 63 RASQTPQRGWSERQPKCHPGCPSAMGCRHGFLIAPNNLPPSATRPNDGTTRVEGRSASRK 122
+AS + R WS G S +G G + LPP+A P DG R GR SR
Sbjct: 125 KASSSSSRCWSR-------GPTSGLGATLGGTV----LPPAARTPRDG-LRDRGRLLSRN 172
Query: 123 SRAK 126
S A+
Sbjct: 173 STAR 176
>gi|239745511 PREDICTED: hypothetical protein XP_002343508 [Homo
sapiens]
Length = 427
Score = 36.2 bits (82), Expect = 0.010
Identities = 38/124 (30%), Positives = 49/124 (39%), Gaps = 23/124 (18%)
Query: 14 CSAVLSLLGSTSAMGCWVC---WTTSMGLTPCSSR-----PRPTRDMSSCW---ASPRSL 62
C V+ G A C C T+ P +R P + + C ASPR
Sbjct: 65 CLRVVPRPGVARAAACCACACAGRTNRQPRPFQARLLAAVPSASNSKTPCTCMSASPRLS 124
Query: 63 RASQTPQRGWSERQPKCHPGCPSAMGCRHGFLIAPNNLPPSATRPNDGTTRVEGRSASRK 122
+AS + R WS G S +G G + LPP+A P DG R GR SR
Sbjct: 125 KASSSSSRCWSR-------GPTSGLGATLGGTV----LPPAARTPRDG-LRDRGRLLSRN 172
Query: 123 SRAK 126
S A+
Sbjct: 173 STAR 176
>gi|14249428 leucine-rich repeats and calponin homology (CH) domain
containing 3 [Homo sapiens]
Length = 712
Score = 35.8 bits (81), Expect = 0.013
Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 9/118 (7%)
Query: 10 QHGHCSAVLSLLGSTSAMGCWVCWTTSMGLTPCSSRPRPTRDMSSCWASPRSLRASQTPQ 69
QH SA+ L + +GC S TP S RP +S SP + +P
Sbjct: 539 QHTDDSALCMSLSGLNQVGCAATLPHSSAFTPLKSDDRPNALLS----SPATETVHHSPA 594
Query: 70 RGWSERQPKCHPGCPSAMGCRHGFLIAPNN-----LPPSATRPNDGTTRVEGRSASRK 122
+ + P P + R G N LPPSA D T + G+++ ++
Sbjct: 595 YSFPAAIQRNQPQRPESFLFRAGVRAETNKGHASPLPPSAAPTTDSTDSITGQNSRQR 652
>gi|7524363 paired box 8 isoform PAX8C [Homo sapiens]
Length = 398
Score = 31.2 bits (69), Expect = 0.31
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 30 WVCWTTSMGLTPCSSRPRPTRDMSSCWASPRSLRASQTPQRGWSERQPKCHPGCPSA 86
W+C ++ G P S P P + C S R+ R S +R W R P HP P A
Sbjct: 304 WICSKSAPGSRP--SMPFPM--LPPCTGSSRA-RPSSQGERWWGPRCPDTHPTSPPA 355
>gi|217416405 alanyl-tRNA synthetase domain containing 1 isoform 3
[Homo sapiens]
Length = 166
Score = 30.8 bits (68), Expect = 0.41
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 54 SCWASPRSLRASQTPQRGWSERQPKCHPGCPSAMGCRH 91
SCW P+ L+ + W+ KCHPG +AM +H
Sbjct: 17 SCWGRPQDLKIAAP---AWNS---KCHPGAGAAMARQH 48
>gi|217416402 alanyl-tRNA synthetase domain containing 1 isoform 1
[Homo sapiens]
Length = 586
Score = 30.8 bits (68), Expect = 0.41
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 54 SCWASPRSLRASQTPQRGWSERQPKCHPGCPSAMGCRH 91
SCW P+ L+ + W+ KCHPG +AM +H
Sbjct: 17 SCWGRPQDLKIAAP---AWNS---KCHPGAGAAMARQH 48
>gi|194097332 ephrin receptor EphB6 precursor [Homo sapiens]
Length = 1021
Score = 30.4 bits (67), Expect = 0.54
Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 33 WTTSMGLTPCSSRPRPTRDMSSCWASPRSLRASQTPQRGWSERQPKCHPGCPSA--MGCR 90
W ++G C +P R +C A PR L S S + H P+A C
Sbjct: 292 WMVAVGGCRCQPGYQPARGDKACQACPRGLYKSSAGNAPCSPCPARSHAPNPAAPVCPCL 351
Query: 91 HGFLIAPNNLPPSA 104
GF A ++ PP A
Sbjct: 352 EGFYRASSD-PPEA 364
>gi|86793109 complement receptor 1 isoform S precursor [Homo sapiens]
Length = 2489
Score = 30.0 bits (66), Expect = 0.70
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 67 TPQRGWSERQPKCH-PGCPSAMG-CRHGFLIAPNNLPPSA--TRPNDGTTRVEGRSAS 120
TPQ WS P+C C +G HG ++ P NL A + D R++GRSAS
Sbjct: 2144 TPQGDWSPEAPRCTVKSCDDFLGQLPHGRVLLPLNLQLGAKVSFVCDEGFRLKGRSAS 2201
>gi|86793036 complement receptor 1 isoform F precursor [Homo sapiens]
Length = 2039
Score = 30.0 bits (66), Expect = 0.70
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 67 TPQRGWSERQPKCH-PGCPSAMG-CRHGFLIAPNNLPPSA--TRPNDGTTRVEGRSAS 120
TPQ WS P+C C +G HG ++ P NL A + D R++GRSAS
Sbjct: 1694 TPQGDWSPEAPRCTVKSCDDFLGQLPHGRVLLPLNLQLGAKVSFVCDEGFRLKGRSAS 1751
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 30.0 bits (66), Expect = 0.70
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 8/105 (7%)
Query: 39 LTPCSSRPR--PTRDMSSCWASPRSLRASQTPQRGWSERQPKCHPGCPSAMGC-RHGFLI 95
++ C SRP P D+ C +P P+R + G P G R L
Sbjct: 1125 VSSCRSRPALSPLGDIDFCPPNP----GPDGPRRRGRKPTKAKRDGPPRPRGRPRIRPLE 1180
Query: 96 APNNL-PPSATRPNDGTTRVEGRSASRKSRAKDEAFFKLLPLMSL 139
P P SA+ P DG + GR R +A++ +L PL L
Sbjct: 1181 VPTTAGPASASTPTDGAKKPRGRGRGRGRKAEEAGGTRLEPLKPL 1225
>gi|226693407 TBC1 domain family, member 3H [Homo sapiens]
Length = 549
Score = 29.3 bits (64), Expect = 1.2
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 32 CWTTSMG----LTPCSSRPRPTRDMSSCWASPRSLRASQTPQRGWSERQPKCHPGCPSAM 87
CW ++ L PC P + S +A+P + TP R E+Q C P++
Sbjct: 478 CWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQ--C---APTSG 532
Query: 88 GCRHGFLIAPNNLPP 102
C G + + PP
Sbjct: 533 PCLCGLHLESSQFPP 547
>gi|14149985 TBC1 domain family, member 3F [Homo sapiens]
Length = 549
Score = 29.3 bits (64), Expect = 1.2
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 32 CWTTSMG----LTPCSSRPRPTRDMSSCWASPRSLRASQTPQRGWSERQPKCHPGCPSAM 87
CW ++ L PC P + S +A+P + TP R E+Q C P++
Sbjct: 478 CWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQ--C---APTSG 532
Query: 88 GCRHGFLIAPNNLPP 102
C G + + PP
Sbjct: 533 PCLCGLHLESSQFPP 547
>gi|183583565 TBC1 domain family, member 3 [Homo sapiens]
Length = 549
Score = 29.3 bits (64), Expect = 1.2
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 32 CWTTSMG----LTPCSSRPRPTRDMSSCWASPRSLRASQTPQRGWSERQPKCHPGCPSAM 87
CW ++ L PC P + S +A+P + TP R E+Q C P++
Sbjct: 478 CWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQ--C---APTSG 532
Query: 88 GCRHGFLIAPNNLPP 102
C G + + PP
Sbjct: 533 PCLCGLHLESSQFPP 547
>gi|183583567 TBC1 domain family, member 3E [Homo sapiens]
Length = 549
Score = 29.3 bits (64), Expect = 1.2
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 32 CWTTSMG----LTPCSSRPRPTRDMSSCWASPRSLRASQTPQRGWSERQPKCHPGCPSAM 87
CW ++ L PC P + S +A+P + TP R E+Q C P++
Sbjct: 478 CWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQ--C---APTSG 532
Query: 88 GCRHGFLIAPNNLPP 102
C G + + PP
Sbjct: 533 PCLCGLHLESSQFPP 547
>gi|183583563 TBC1 domain family, member 3D [Homo sapiens]
Length = 549
Score = 29.3 bits (64), Expect = 1.2
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 32 CWTTSMG----LTPCSSRPRPTRDMSSCWASPRSLRASQTPQRGWSERQPKCHPGCPSAM 87
CW ++ L PC P + S +A+P + TP R E+Q C P++
Sbjct: 478 CWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQ--C---APTSG 532
Query: 88 GCRHGFLIAPNNLPP 102
C G + + PP
Sbjct: 533 PCLCGLHLESSQFPP 547
>gi|90577185 TBC1 domain family member 3C [Homo sapiens]
Length = 549
Score = 29.3 bits (64), Expect = 1.2
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 32 CWTTSMG----LTPCSSRPRPTRDMSSCWASPRSLRASQTPQRGWSERQPKCHPGCPSAM 87
CW ++ L PC P + S +A+P + TP R E+Q C P++
Sbjct: 478 CWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQ--C---APTSG 532
Query: 88 GCRHGFLIAPNNLPP 102
C G + + PP
Sbjct: 533 PCLCGLHLESSQFPP 547
>gi|157502205 TBC1 domain family, member 3G [Homo sapiens]
Length = 549
Score = 29.3 bits (64), Expect = 1.2
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 32 CWTTSMG----LTPCSSRPRPTRDMSSCWASPRSLRASQTPQRGWSERQPKCHPGCPSAM 87
CW ++ L PC P + S +A+P + TP R E+Q C P++
Sbjct: 478 CWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQ--C---APTSG 532
Query: 88 GCRHGFLIAPNNLPP 102
C G + + PP
Sbjct: 533 PCLCGLHLESSQFPP 547
>gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 1 [Homo
sapiens]
Length = 1834
Score = 28.9 bits (63), Expect = 1.6
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 43 SSRPRPTRDMSSCWASPRSLRASQTPQRGWSE-RQPKCHPGCPSAMGCRHGFLIAPN--N 99
S +PRP + + + + ++PQ W+E +PK PG M R +PN N
Sbjct: 1118 SGKPRPKSEGFELYNNSTQNGSPESPQLPWAEYSEPKKLPGDDRLMKNRADHRSSPNVAN 1177
Query: 100 LPPS 103
PPS
Sbjct: 1178 QPPS 1181
>gi|90819233 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 2 [Homo
sapiens]
Length = 1651
Score = 28.9 bits (63), Expect = 1.6
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 43 SSRPRPTRDMSSCWASPRSLRASQTPQRGWSE-RQPKCHPGCPSAMGCRHGFLIAPN--N 99
S +PRP + + + + ++PQ W+E +PK PG M R +PN N
Sbjct: 1119 SGKPRPKSEGFELYNNSTQNGSPESPQLPWAEYSEPKKLPGDDRLMKNRADHRSSPNVAN 1178
Query: 100 LPPS 103
PPS
Sbjct: 1179 QPPS 1182
>gi|90819231 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 3 [Homo
sapiens]
Length = 1612
Score = 28.9 bits (63), Expect = 1.6
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 43 SSRPRPTRDMSSCWASPRSLRASQTPQRGWSE-RQPKCHPGCPSAMGCRHGFLIAPN--N 99
S +PRP + + + + ++PQ W+E +PK PG M R +PN N
Sbjct: 1103 SGKPRPKSEGFELYNNSTQNGSPESPQLPWAEYSEPKKLPGDDRLMKNRADHRSSPNVAN 1162
Query: 100 LPPS 103
PPS
Sbjct: 1163 QPPS 1166
>gi|149999613 TBC1 domain family, member 3B [Homo sapiens]
Length = 549
Score = 28.9 bits (63), Expect = 1.6
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 9/75 (12%)
Query: 32 CWTTSMG----LTPCSSRPRPTRDMSSCWASPRSLRASQTPQRGWSERQPKCHPGCPSAM 87
CW ++ L PC P + S +A+P + TP R E+Q P++
Sbjct: 478 CWVRAISQEDQLAPCWQAEHPAERVRSAFAAPSTDSDQGTPFRARDEQQ-----YAPTSG 532
Query: 88 GCRHGFLIAPNNLPP 102
C G + + PP
Sbjct: 533 PCLCGLHLESSQFPP 547
>gi|140561027 CASK-interacting protein CIP98 isoform 2 [Homo
sapiens]
Length = 524
Score = 28.9 bits (63), Expect = 1.6
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 34 TTSMGLTPCSSRPRPTRDMSSCWASPRSLRASQTPQRGWSERQPKCHPGCPSAM-GCRHG 92
+TS GL+ PRP A L Q + G + QP PS+M C
Sbjct: 188 STSQGLSSFKPLPRPPP-----LAQGNDLPLGQPRKLGREDLQP------PSSMPSCSGT 236
Query: 93 FLIAPNNL-PPSATRPNDGTTRVEGRSAS 120
AP N PP+ T P GT+ + +S
Sbjct: 237 VFSAPQNRSPPAGTAPTPGTSSAQDLPSS 265
>gi|140561024 CASK-interacting protein CIP98 isoform 1 [Homo
sapiens]
Length = 907
Score = 28.9 bits (63), Expect = 1.6
Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 34 TTSMGLTPCSSRPRPTRDMSSCWASPRSLRASQTPQRGWSERQPKCHPGCPSAM-GCRHG 92
+TS GL+ PRP A L Q + G + QP PS+M C
Sbjct: 571 STSQGLSSFKPLPRPPP-----LAQGNDLPLGQPRKLGREDLQP------PSSMPSCSGT 619
Query: 93 FLIAPNNL-PPSATRPNDGTTRVEGRSAS 120
AP N PP+ T P GT+ + +S
Sbjct: 620 VFSAPQNRSPPAGTAPTPGTSSAQDLPSS 648
>gi|239749835 PREDICTED: hypothetical protein XP_002347183 [Homo
sapiens]
Length = 321
Score = 28.5 bits (62), Expect = 2.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 60 RSLRASQTPQRGWSERQPKCHPGCPSAMG 88
R LR +R +ER P+C PG P G
Sbjct: 264 RELRPDPDSRRASAERSPRCPPGSPRKAG 292
>gi|239744125 PREDICTED: hypothetical protein XP_002343039 [Homo
sapiens]
Length = 321
Score = 28.5 bits (62), Expect = 2.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 60 RSLRASQTPQRGWSERQPKCHPGCPSAMG 88
R LR +R +ER P+C PG P G
Sbjct: 264 RELRPDPDSRRASAERSPRCPPGSPRKAG 292
>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo
sapiens]
Length = 1747
Score = 28.5 bits (62), Expect = 2.0
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 57 ASPRSLRASQTPQRGWSERQPKCHPGCPSAMGCRHGFLIAPNNLPPSATRPNDGTTRVEG 116
ASPR L+ S + E QP PG PS H L+ R D + + G
Sbjct: 365 ASPRPLQRSASDINLKGEAQPAASPG-PSLRSLPHQLLLQRLQEEKDRDRDADQESNISG 423
Query: 117 RSASRKSRAK 126
A R ++K
Sbjct: 424 PLAGRAGQSK 433
>gi|217416407 alanyl-tRNA synthetase domain containing 1 isoform 4
[Homo sapiens]
Length = 161
Score = 28.5 bits (62), Expect = 2.0
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 54 SCWASPRSLRASQTPQRGWSERQPKCHPGCPSAM 87
SCW P+ L+ + W+ KCHPG +AM
Sbjct: 17 SCWGRPQDLKIAAP---AWNS---KCHPGAGAAM 44
>gi|239755587 PREDICTED: hypothetical protein [Homo sapiens]
Length = 211
Score = 28.1 bits (61), Expect = 2.7
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 14/68 (20%)
Query: 43 SSRPRPTRDMSSCWASPRSLRASQTPQRGWSERQPK---CHPGCPSAMGCRHGFLIAPNN 99
SSRP P +S C SP A P G R P P PS+ L++P+
Sbjct: 33 SSRPHPLSTLSLCSRSP----APAAPPLGRQSRNPARGLASPSTPSS-------LLSPSR 81
Query: 100 LPPSATRP 107
+P P
Sbjct: 82 IPRGQAAP 89
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.130 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,532,525
Number of Sequences: 37866
Number of extensions: 326701
Number of successful extensions: 1158
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 1103
Number of HSP's gapped (non-prelim): 118
length of query: 144
length of database: 18,247,518
effective HSP length: 92
effective length of query: 52
effective length of database: 14,763,846
effective search space: 767719992
effective search space used: 767719992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.