Guide to the Human Genome
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Name: C5orf4 Sequence: fasta or formatted (333aa) NCBI GI: 146198575
Description:

hypothetical protein LOC10826 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {144aa} hypothetical protein LOC10826 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6         12           1
 C cysteine            1.5          5           1
 D aspartate           2.1          7           1
 E glutamate           5.1         17           2
 F phenylalanine       8.1         27           2
 G glycine             6.3         21           1
 H histidine           6.6         22           2
 I isoleucine          6.3         21           2
 K lysine              4.8         16           2
 L leucine            12.0         40           3
 M methionine          3.0         10           1
 N asparagine          2.4          8           1
 P proline             5.7         19           1
 Q glutamine           3.0         10           1
 R arginine            4.2         14           2
 S serine              6.6         22           2
 T threonine           5.4         18           2
 V valine              6.0         20           2
 W tryptophan          3.9         13           2
 Y tyrosine            3.3         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC10826 isoform 2 
SC4MOL                0.114   sterol-C4-methyl oxidase-like isoform 1 
SC4MOL                0.092   sterol-C4-methyl oxidase-like isoform 2 
SC5DL                 0.055   sterol-C5-desaturase 
SC5DL                 0.055   sterol-C5-desaturase 
CH25H                 0.028   cholesterol 25-hydroxylase 
TMEM195               0.009   transmembrane protein 195 
NLK                   0.007   nemo like kinase 
IL6R                  0.006   interleukin 6 receptor isoform 1 precursor 
IL6R                  0.006   interleukin 6 receptor isoform 2 precursor 
OR4F15                0.006   olfactory receptor, family 4, subfamily F, member 15...
MRGPRG                0.004   PREDICTED: MAS-related GPR, member G 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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