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Search of human proteins with 7705330
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7705330 COP9 complex subunit 7a [Homo sapiens]
(275 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7705330 COP9 complex subunit 7a [Homo sapiens] 530 e-151
gi|12232385 COP9 constitutive photomorphogenic homolog subunit 7... 301 3e-82
gi|157502195 proteasome 26S non-ATPase subunit 13 isoform 2 [Hom... 39 0.004
gi|157502193 proteasome 26S non-ATPase subunit 13 isoform 1 [Hom... 39 0.004
gi|148762940 DVL-binding protein DAPLE [Homo sapiens] 38 0.008
gi|32698688 citron [Homo sapiens] 35 0.071
gi|32528293 ecto-NOX disulfide-thiol exchanger 2 isoform a [Homo... 33 0.21
gi|32528291 ecto-NOX disulfide-thiol exchanger 2 isoform b [Homo... 33 0.21
gi|187607364 tuftelin 1 isoform 2 [Homo sapiens] 33 0.27
gi|9910596 tuftelin 1 isoform 1 [Homo sapiens] 33 0.27
gi|153791497 ciliary rootlet coiled-coil [Homo sapiens] 32 0.46
gi|109134347 NY-REN-58 antigen [Homo sapiens] 32 0.46
gi|109134355 NY-REN-58 antigen [Homo sapiens] 32 0.46
gi|21264320 NLR family, pyrin domain containing 6 [Homo sapiens] 32 0.46
gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 32 0.60
gi|22208850 Golgi coiled-coil protein 1 [Homo sapiens] 32 0.60
gi|47519616 tropomyosin 2 (beta) isoform 2 [Homo sapiens] 32 0.79
gi|224922812 tropomyosin 2 (beta) isoform 3 [Homo sapiens] 32 0.79
gi|42794779 myosin 18A isoform b [Homo sapiens] 32 0.79
gi|28416946 myosin 18A isoform a [Homo sapiens] 32 0.79
gi|39930343 transmembrane and coiled-coil domain family 1 isofor... 32 0.79
gi|190014612 transmembrane and coiled-coil domain family 1 isofo... 32 0.79
gi|190014610 transmembrane and coiled-coil domain family 1 isofo... 32 0.79
gi|39753961 IQ motif containing GTPase activating protein 3 [Hom... 31 1.0
gi|157738615 coiled-coil alpha-helical rod protein 1 isoform 1 [... 31 1.3
gi|157738613 coiled-coil alpha-helical rod protein 1 isoform 2 [... 31 1.3
gi|157738611 coiled-coil alpha-helical rod protein 1 isoform 3 [... 31 1.3
gi|146262005 CTAGE family, member 6 [Homo sapiens] 31 1.3
gi|190341068 forkhead-associated (FHA) phosphopeptide binding do... 31 1.3
gi|223555935 dynein, axonemal, heavy polypeptide 14 isoform 1 [H... 30 1.8
>gi|7705330 COP9 complex subunit 7a [Homo sapiens]
Length = 275
Score = 530 bits (1364), Expect = e-151
Identities = 275/275 (100%), Positives = 275/275 (100%)
Query: 1 MSAEVKVTGQNQEQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDF 60
MSAEVKVTGQNQEQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDF
Sbjct: 1 MSAEVKVTGQNQEQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDF 60
Query: 61 ASTFRLLTVFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEAL 120
ASTFRLLTVFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEAL
Sbjct: 61 ASTFRLLTVFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEAL 120
Query: 121 ALRNVRQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVG 180
ALRNVRQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVG
Sbjct: 121 ALRNVRQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVG 180
Query: 181 CEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLT 240
CEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLT
Sbjct: 181 CEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLT 240
Query: 241 ELREPAPGTNQRQPSKKASKGKGLRGSAKIWSKSN 275
ELREPAPGTNQRQPSKKASKGKGLRGSAKIWSKSN
Sbjct: 241 ELREPAPGTNQRQPSKKASKGKGLRGSAKIWSKSN 275
>gi|12232385 COP9 constitutive photomorphogenic homolog subunit 7B
[Homo sapiens]
Length = 264
Score = 301 bits (772), Expect = 3e-82
Identities = 154/267 (57%), Positives = 204/267 (76%), Gaps = 5/267 (1%)
Query: 1 MSAEVKVTGQNQEQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDF 60
M+ E K + EQF+LLAK G+AL LI QVLEAPGVYVFGELL++ NV+ELAE
Sbjct: 1 MAGEQKPSSNLLEQFILLAKGTSGSALTALISQVLEAPGVYVFGELLELANVQELAEGAN 60
Query: 61 ASTFRLLTVFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEAL 120
A+ +LL +FAYGTY DY+A +LP L+ AQ+NKL+HL++V+LA+++KCIPY+VLL+ L
Sbjct: 61 AAYLQLLNLFAYGTYPDYIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDL 120
Query: 121 ALRNVRQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVG 180
+RN+R+LEDL+IEAVY D+++G LDQRNQ LEVD+ IGRDI+++D++ I +TL EWC G
Sbjct: 121 EMRNLRELEDLIIEAVYTDIIQGKLDQRNQLLEVDFCIGRDIRKKDINNIVKTLHEWCDG 180
Query: 181 CEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLT 240
CE VL GIE+QV RANQ+KE +QQ+E+EV N+KKT+K T A++++Q+ EQ L
Sbjct: 181 CEAVLLGIEQQVLRANQYKENHNRTQQQVEAEVTNIKKTLKAT----ASSSAQEMEQQLA 236
Query: 241 ELREPAPGTNQRQPSKKASKGKGLRGS 267
E RE P QRQP+KK SK KGL S
Sbjct: 237 E-RECPPHAEQRQPTKKMSKVKGLVSS 262
>gi|157502195 proteasome 26S non-ATPase subunit 13 isoform 2 [Homo
sapiens]
Length = 378
Score = 39.3 bits (90), Expect = 0.004
Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 9/162 (5%)
Query: 39 GVYVFGELLDMPNVRELAESDFASTFRLLTVFAYGTYADYLAEAR---NLPPLTEAQKNK 95
GV+ FGELL P + L +D L F G + P L +
Sbjct: 211 GVFNFGELLMHPVLESLRNTDRQWLIDTLYAFNSGNVERFQTLKTAWGQQPDLAANEAQL 270
Query: 96 LRHLSVVTLAAKVKCIPY---AVLLEALALR---NVRQLEDLVIEAVYADVLRGSLDQRN 149
LR + ++ L P + E +A V ++E LV++A+ +++GS+D+ +
Sbjct: 271 LRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDEVD 330
Query: 150 QRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIEEQ 191
+R+ + + R + Q + + L+ WC + + +E Q
Sbjct: 331 KRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDVKSMEMLVEHQ 372
>gi|157502193 proteasome 26S non-ATPase subunit 13 isoform 1 [Homo
sapiens]
Length = 376
Score = 39.3 bits (90), Expect = 0.004
Identities = 37/162 (22%), Positives = 69/162 (42%), Gaps = 9/162 (5%)
Query: 39 GVYVFGELLDMPNVRELAESDFASTFRLLTVFAYGTYADYLAEAR---NLPPLTEAQKNK 95
GV+ FGELL P + L +D L F G + P L +
Sbjct: 209 GVFNFGELLMHPVLESLRNTDRQWLIDTLYAFNSGNVERFQTLKTAWGQQPDLAANEAQL 268
Query: 96 LRHLSVVTLAAKVKCIPY---AVLLEALALR---NVRQLEDLVIEAVYADVLRGSLDQRN 149
LR + ++ L P + E +A V ++E LV++A+ +++GS+D+ +
Sbjct: 269 LRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDEVD 328
Query: 150 QRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIEEQ 191
+R+ + + R + Q + + L+ WC + + +E Q
Sbjct: 329 KRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDVKSMEMLVEHQ 370
>gi|148762940 DVL-binding protein DAPLE [Homo sapiens]
Length = 2028
Score = 38.1 bits (87), Expect = 0.008
Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 15/150 (10%)
Query: 115 VLLEALALRNVRQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTL 174
V + A L +R EDLV+E + + L LD+ +Q LE + R++ Q+ + + T
Sbjct: 900 VTVHARTLTTLR--EDLVLEKLKSQQLSSELDKLSQELE-KVGLNRELLLQEDDSGSDTK 956
Query: 175 QEWCVG-----CEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAA 229
+ G + L+ EE++ E++ L +Q+ESE+ LKK +
Sbjct: 957 YKILEGRNESALKTTLAMKEEKIVLLEAQMEEKASLNRQLESELQMLKKECE------TL 1010
Query: 230 ATSQDPEQHL-TELREPAPGTNQRQPSKKA 258
+Q QHL + PA T K+A
Sbjct: 1011 RQNQGEGQHLQNSFKHPAGKTAASHQGKEA 1040
>gi|32698688 citron [Homo sapiens]
Length = 2027
Score = 35.0 bits (79), Expect = 0.071
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 22/129 (17%)
Query: 123 RNVRQLEDLVIEA----VYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWC 178
RN++ E+++ E Y + G L+ +N++LE I QD S R L+
Sbjct: 800 RNMKAQEEMISELRQQKFYLETQAGKLEAQNRKLEEQLE---KISHQDHSDKNRLLE--- 853
Query: 179 VGCEVVLSGIEEQVSRAN-QHKEQQLGLKQQIESEVANLKKTIKVTTA--AAAAATSQDP 235
+E ++ + +H+EQ+L LK+Q+ +L++ TA AA AA
Sbjct: 854 ---------LETRLREVSLEHEEQKLELKRQLTELQLSLQERESQLTALQAARAALESQL 904
Query: 236 EQHLTELRE 244
Q TEL E
Sbjct: 905 RQAKTELEE 913
>gi|32528293 ecto-NOX disulfide-thiol exchanger 2 isoform a [Homo
sapiens]
Length = 581
Score = 33.5 bits (75), Expect = 0.21
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 139 DVLRGSLDQRNQRLEVDYSIGRDIQRQD---LSAIARTLQEWCVGCEVVLSGIEEQVSRA 195
D LR LD +E+ + R+D + LQ+ G + L ++E+ +
Sbjct: 390 DSLRWQLDAYRNEVELLKQEQGKVHREDDPNKEQQLKLLQQALQGMQQHLLKVQEEYKKK 449
Query: 196 NQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLTELREPAPGTNQRQ 253
E+ K Q+E + NLK+ K + A+ A++QD E L + +P ++R+
Sbjct: 450 EAELEKLKDDKLQVEKMLENLKE--KESCASRLCASNQDSEYPLEKTMNSSPIKSERE 505
>gi|32528291 ecto-NOX disulfide-thiol exchanger 2 isoform b [Homo
sapiens]
Length = 610
Score = 33.5 bits (75), Expect = 0.21
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 139 DVLRGSLDQRNQRLEVDYSIGRDIQRQD---LSAIARTLQEWCVGCEVVLSGIEEQVSRA 195
D LR LD +E+ + R+D + LQ+ G + L ++E+ +
Sbjct: 419 DSLRWQLDAYRNEVELLKQEQGKVHREDDPNKEQQLKLLQQALQGMQQHLLKVQEEYKKK 478
Query: 196 NQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLTELREPAPGTNQRQ 253
E+ K Q+E + NLK+ K + A+ A++QD E L + +P ++R+
Sbjct: 479 EAELEKLKDDKLQVEKMLENLKE--KESCASRLCASNQDSEYPLEKTMNSSPIKSERE 534
>gi|187607364 tuftelin 1 isoform 2 [Homo sapiens]
Length = 365
Score = 33.1 bits (74), Expect = 0.27
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Query: 153 EVDYSIGRDIQR-----QDLSA----IARTLQEWCVGCEVVLSGIEEQVSRANQHKEQQL 203
EVD I D++ QDL A R Q CV EV LS + + ++N +++
Sbjct: 135 EVDTCINEDVESLRKTVQDLLAKLQEAKRQHQSDCVAFEVTLSRYQREAEQSNVALQREE 194
Query: 204 GLKQQIESEVANLKKTI--KVTTAAAAAATSQDPEQHLTELR 243
+Q E+EV L++ + T A A ++ E L ELR
Sbjct: 195 DRVEQKEAEVGELQRRLLGMETEHQALLAKVREGEVALEELR 236
>gi|9910596 tuftelin 1 isoform 1 [Homo sapiens]
Length = 390
Score = 33.1 bits (74), Expect = 0.27
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 11/102 (10%)
Query: 153 EVDYSIGRDIQR-----QDLSA----IARTLQEWCVGCEVVLSGIEEQVSRANQHKEQQL 203
EVD I D++ QDL A R Q CV EV LS + + ++N +++
Sbjct: 160 EVDTCINEDVESLRKTVQDLLAKLQEAKRQHQSDCVAFEVTLSRYQREAEQSNVALQREE 219
Query: 204 GLKQQIESEVANLKKTI--KVTTAAAAAATSQDPEQHLTELR 243
+Q E+EV L++ + T A A ++ E L ELR
Sbjct: 220 DRVEQKEAEVGELQRRLLGMETEHQALLAKVREGEVALEELR 261
>gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]
Length = 2017
Score = 32.3 bits (72), Expect = 0.46
Identities = 58/240 (24%), Positives = 94/240 (39%), Gaps = 26/240 (10%)
Query: 1 MSAEVKVTGQNQEQFLLLAKSAKGAALA------TLIHQVLEAPGVYVFGELLDMPNVRE 54
+S E+ Q +++ LLLA+S K AL+ T + + L + L+M +
Sbjct: 1038 LSEEIAALQQERDEGLLLAESEKQQALSLKESEKTALSEKLMGTRHSLATISLEMERQKR 1097
Query: 55 LAES---DFASTFRLLTVFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCI 111
A+S ST LT D A+ + +L+ + + C
Sbjct: 1098 DAQSRQEQDRSTVNALT----SELRDLRAQREEAAAAHAQEVRRLQEQARDLGKQRDSC- 1152
Query: 112 PYAVLLEALALRN-VRQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAI 170
L EA LR +R LED D LR L + ++L GR++QRQ+ +
Sbjct: 1153 ----LREAEELRTQLRLLEDA------RDGLRRELLEAQRKLRESQE-GREVQRQEAGEL 1201
Query: 171 ARTLQEWCVGCEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAA 230
R+L E E + EE S + + +++ LK E + L + TA A
Sbjct: 1202 RRSLGEGAKEREALRRSNEELRSAVKKAESERISLKLANEDKEQKLALLEEARTAVGKEA 1261
>gi|109134347 NY-REN-58 antigen [Homo sapiens]
Length = 701
Score = 32.3 bits (72), Expect = 0.46
Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 19/151 (12%)
Query: 95 KLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLVIEAVYADVLRGS-LDQRNQRLE 153
K R L AAK + V+L+ L +L DL V DV R S DQ ++L
Sbjct: 372 KDRELIRKVQAAKEEGYQKLVVLQDEKLELENRLADLEKMKVEHDVWRQSEKDQYEEKLR 431
Query: 154 VDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIEEQVSRANQHKEQQLGLKQQIESEV 213
+ +I R++L ++ LQ+ V + A + K + LKQQI S
Sbjct: 432 AS-QMAEEITRKELQSVRLKLQQQIV-----------TIENAEKEKNENSDLKQQISS-- 477
Query: 214 ANLKKTIKVTTAAAAAATSQDPEQHLTELRE 244
I+VT+ A + + Q L E+ E
Sbjct: 478 ----LQIQVTSLAQSENDLLNSNQMLKEMVE 504
>gi|109134355 NY-REN-58 antigen [Homo sapiens]
Length = 701
Score = 32.3 bits (72), Expect = 0.46
Identities = 42/151 (27%), Positives = 63/151 (41%), Gaps = 19/151 (12%)
Query: 95 KLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLVIEAVYADVLRGS-LDQRNQRLE 153
K R L AAK + V+L+ L +L DL V DV R S DQ ++L
Sbjct: 372 KDRELIRKVQAAKEEGYQKLVVLQDEKLELENRLADLEKMKVEHDVWRQSEKDQYEEKLR 431
Query: 154 VDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIEEQVSRANQHKEQQLGLKQQIESEV 213
+ +I R++L ++ LQ+ V + A + K + LKQQI S
Sbjct: 432 AS-QMAEEITRKELQSVRLKLQQQIV-----------TIENAEKEKNENSDLKQQISS-- 477
Query: 214 ANLKKTIKVTTAAAAAATSQDPEQHLTELRE 244
I+VT+ A + + Q L E+ E
Sbjct: 478 ----LQIQVTSLAQSENDLLNSNQMLKEMVE 504
>gi|21264320 NLR family, pyrin domain containing 6 [Homo sapiens]
Length = 892
Score = 32.3 bits (72), Expect = 0.46
Identities = 41/168 (24%), Positives = 66/168 (39%), Gaps = 17/168 (10%)
Query: 85 LPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLVIEAVYADVLRGS 144
L L++ Q + RH + + + IP+ L A A+ QL +V R +
Sbjct: 26 LEELSQEQLKRFRH-KLRDVGPDGRSIPWGRLERADAVDLAEQLAQFYGPEPALEVARKT 84
Query: 145 LDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIEEQVSRANQHKEQQLG 204
L + + R + +Q R LQ +G +LS E + +++E L
Sbjct: 85 LKRADAR-----DVAAQLQE-------RRLQRLGLGSGTLLSVSEYK----KKYREHVLQ 128
Query: 205 LKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLTELREPAPGTNQR 252
L +++ A K K T A S PE+ L EP PG +R
Sbjct: 129 LHARVKERNARSVKITKRFTKLLIAPESAAPEEALGPAEEPEPGRARR 176
>gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2
[Homo sapiens]
Length = 8749
Score = 32.0 bits (71), Expect = 0.60
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 18/126 (14%)
Query: 106 AKVKCIPYAVLLEALALRNVRQLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQ 165
+K K + VL ++++VR+ + ++E V L+ +DQ L+ DY Q
Sbjct: 3842 SKYKSLQQTVLSHEPSVKSVREKGEALLELVQDVTLKDKIDQ----LQSDY--------Q 3889
Query: 166 DLSAIARTLQEWCVGCEVVLSGIEEQ----VSRANQHKEQQLGLKQQIESEVANLKKTIK 221
DL +I + + E G E L+ ++ + + + H Q LKQ + + + K +
Sbjct: 3890 DLCSIGKAMMEEIAGFEDRLNNLQMKGDTLIGQCADH--LQAKLKQNVHAHLQGTKDSYS 3947
Query: 222 VTTAAA 227
+ A
Sbjct: 3948 AICSTA 3953
>gi|22208850 Golgi coiled-coil protein 1 [Homo sapiens]
Length = 775
Score = 32.0 bits (71), Expect = 0.60
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
Query: 144 SLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIEEQVSRANQHKEQQL 203
++ Q R+E Y + +QDL + +E E L G++EQ++ Q
Sbjct: 174 TVTQEKSRMEASYLADKKKMKQDLEDASNKAEEERARLEGELKGLQEQIAETKARLITQQ 233
Query: 204 GLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLTELREPAPG 248
+ Q +S+ A + + ++ QD E L E RE G
Sbjct: 234 HDRAQEQSDHALMLRELQ-KLLQEERTQRQDLELRLEETREALAG 277
>gi|47519616 tropomyosin 2 (beta) isoform 2 [Homo sapiens]
Length = 284
Score = 31.6 bits (70), Expect = 0.79
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 140 VLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIEEQVSRANQHK 199
+L G L++ +R EV S R ++ + RT+ + + +++ EE ++ ++++
Sbjct: 171 ILEGELERSEERAEVAESRARQLEEE-----LRTMDQ---ALKSLMASEEEYSTKEDKYE 222
Query: 200 EQQLGLKQQI----------ESEVANLKKTIKVTTAAAAAATSQDPEQHLT 240
E+ L++++ E VA L+KTI A+A ++ E H T
Sbjct: 223 EEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEETLASAKEENVEIHQT 273
>gi|224922812 tropomyosin 2 (beta) isoform 3 [Homo sapiens]
Length = 231
Score = 31.6 bits (70), Expect = 0.79
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 18/111 (16%)
Query: 140 VLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIEEQVSRANQHK 199
+L G L++ +R EV S R ++ + RT+ + + +++ EE ++ ++++
Sbjct: 118 ILEGELERSEERAEVAESRARQLEEE-----LRTMDQ---ALKSLMASEEEYSTKEDKYE 169
Query: 200 EQQLGLKQQI----------ESEVANLKKTIKVTTAAAAAATSQDPEQHLT 240
E+ L++++ E VA L+KTI A+A ++ E H T
Sbjct: 170 EEIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEETLASAKEENVEIHQT 220
>gi|42794779 myosin 18A isoform b [Homo sapiens]
Length = 2039
Score = 31.6 bits (70), Expect = 0.79
Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 10/152 (6%)
Query: 79 LAEARNLPPLTEAQKNKLRHLS--VVTLAAKVKCIPYAVLLEALALRNVR-QLEDLVIEA 135
LAEA +L E + + + VV+L A+++ I + +L V+ QL DL +
Sbjct: 1492 LAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQESKDEASLAKVKKQLRDLEAKV 1551
Query: 136 V----YADVLRGS---LDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGI 188
D G+ L+Q RLE++ R +++ + ++E C+ L +
Sbjct: 1552 KDQEEELDEQAGTIQMLEQAKLRLEMEMERMRQTHSKEMESRDEEVEEARQSCQKKLKQM 1611
Query: 189 EEQVSRANQHKEQQLGLKQQIESEVANLKKTI 220
E Q+ + K++ L K+++E ++A L +
Sbjct: 1612 EVQLEEEYEDKQKVLREKRELEGKLATLSDQV 1643
>gi|28416946 myosin 18A isoform a [Homo sapiens]
Length = 2054
Score = 31.6 bits (70), Expect = 0.79
Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 10/152 (6%)
Query: 79 LAEARNLPPLTEAQKNKLRHLS--VVTLAAKVKCIPYAVLLEALALRNVR-QLEDLVIEA 135
LAEA +L E + + + VV+L A+++ I + +L V+ QL DL +
Sbjct: 1492 LAEAFSLKQQLEEKDMDIAGFTQKVVSLEAELQDISSQESKDEASLAKVKKQLRDLEAKV 1551
Query: 136 V----YADVLRGS---LDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGI 188
D G+ L+Q RLE++ R +++ + ++E C+ L +
Sbjct: 1552 KDQEEELDEQAGTIQMLEQAKLRLEMEMERMRQTHSKEMESRDEEVEEARQSCQKKLKQM 1611
Query: 189 EEQVSRANQHKEQQLGLKQQIESEVANLKKTI 220
E Q+ + K++ L K+++E ++A L +
Sbjct: 1612 EVQLEEEYEDKQKVLREKRELEGKLATLSDQV 1643
>gi|39930343 transmembrane and coiled-coil domain family 1 isoform b
[Homo sapiens]
Length = 329
Score = 31.6 bits (70), Expect = 0.79
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 151 RLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIEEQVSRANQ-HKEQQLGLKQQI 209
RLE + ++ ++D S I +TLQE CE +EEQ++ + H+ + L LKQ++
Sbjct: 151 RLEESFETLKEHYQRDYSLIMQTLQEERYRCE----RLEEQLNDLTELHQNEILNLKQEL 206
Query: 210 ES 211
S
Sbjct: 207 AS 208
>gi|190014612 transmembrane and coiled-coil domain family 1 isoform
c [Homo sapiens]
Length = 539
Score = 31.6 bits (70), Expect = 0.79
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 151 RLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIEEQVSRANQ-HKEQQLGLKQQI 209
RLE + ++ ++D S I +TLQE CE +EEQ++ + H+ + L LKQ++
Sbjct: 361 RLEESFETLKEHYQRDYSLIMQTLQEERYRCE----RLEEQLNDLTELHQNEILNLKQEL 416
Query: 210 ES 211
S
Sbjct: 417 AS 418
>gi|190014610 transmembrane and coiled-coil domain family 1 isoform
a [Homo sapiens]
Length = 653
Score = 31.6 bits (70), Expect = 0.79
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 151 RLEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGIEEQVSRANQ-HKEQQLGLKQQI 209
RLE + ++ ++D S I +TLQE CE +EEQ++ + H+ + L LKQ++
Sbjct: 475 RLEESFETLKEHYQRDYSLIMQTLQEERYRCE----RLEEQLNDLTELHQNEILNLKQEL 530
Query: 210 ES 211
S
Sbjct: 531 AS 532
>gi|39753961 IQ motif containing GTPase activating protein 3 [Homo
sapiens]
Length = 1631
Score = 31.2 bits (69), Expect = 1.0
Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 26/173 (15%)
Query: 73 GTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNV--RQLED 130
G D LA +N L E + L A + + A + +A RN R+ +D
Sbjct: 221 GVVEDTLAALQNPSALLENLREPLA-------AVYQEMLAQAKMEKAANARNHDDRESQD 273
Query: 131 LVIEAVYADVLRGSLDQRNQR--LEVDYSIGRDIQRQDLSAIARTLQEWCVGCEVVLSGI 188
+ + ++G+++ N LEV + ++RQ A+ + LQ+ + V
Sbjct: 274 IYDHYLTQAEIQGNINHVNVHGALEV---VDDALERQSPEALLKALQDPALALRGVRRDF 330
Query: 189 E----EQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQ 237
EQ++ + K Q+LGL + +E E +V AAA T D EQ
Sbjct: 331 ADWYLEQLNSDREQKAQELGLVELLEKE--------EVQAGVAAANTKGDQEQ 375
>gi|157738615 coiled-coil alpha-helical rod protein 1 isoform 1
[Homo sapiens]
Length = 871
Score = 30.8 bits (68), Expect = 1.3
Identities = 64/289 (22%), Positives = 111/289 (38%), Gaps = 48/289 (16%)
Query: 2 SAEVKVTGQNQEQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFA 61
S + KVT Q+QEQ +L +S + A + + + A G+ + EL R + A
Sbjct: 457 SLQEKVTSQSQEQ-AILQRSLQDKAAEVEVER-MGAKGLQL--ELSRAQEARRRWQQQTA 512
Query: 62 ST---FRLLT-------VFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCI 111
S RL+ ++ T A A LP L +R + +
Sbjct: 513 SAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIR-------- 564
Query: 112 PYAVLLEALALRNVRQ--------LEDLVIEAVYADVLRGSLD---QRNQRLEVDYSIGR 160
++ LAL +RQ + D+ +E R LD Q + RL + +GR
Sbjct: 565 --GLIARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLSARL-IQQEVGR 621
Query: 161 -----DIQRQDLSAIARTLQEWCVGCEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVAN 215
+ +RQ LS +A+ L++ + L+ + Q+ A Q +Q+ E A+
Sbjct: 622 AREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQG-------QQESTEEAAS 674
Query: 216 LKKTIKVTTAAAAAATSQDPEQHLTELREPAPGTNQRQPSKKASKGKGL 264
L++ + A + + T LRE T +R + K +
Sbjct: 675 LRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAV 723
>gi|157738613 coiled-coil alpha-helical rod protein 1 isoform 2
[Homo sapiens]
Length = 835
Score = 30.8 bits (68), Expect = 1.3
Identities = 64/289 (22%), Positives = 111/289 (38%), Gaps = 48/289 (16%)
Query: 2 SAEVKVTGQNQEQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFA 61
S + KVT Q+QEQ +L +S + A + + + A G+ + EL R + A
Sbjct: 421 SLQEKVTSQSQEQ-AILQRSLQDKAAEVEVER-MGAKGLQL--ELSRAQEARRRWQQQTA 476
Query: 62 ST---FRLLT-------VFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCI 111
S RL+ ++ T A A LP L +R + +
Sbjct: 477 SAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIR-------- 528
Query: 112 PYAVLLEALALRNVRQ--------LEDLVIEAVYADVLRGSLD---QRNQRLEVDYSIGR 160
++ LAL +RQ + D+ +E R LD Q + RL + +GR
Sbjct: 529 --GLIARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLSARL-IQQEVGR 585
Query: 161 -----DIQRQDLSAIARTLQEWCVGCEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVAN 215
+ +RQ LS +A+ L++ + L+ + Q+ A Q +Q+ E A+
Sbjct: 586 AREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQG-------QQESTEEAAS 638
Query: 216 LKKTIKVTTAAAAAATSQDPEQHLTELREPAPGTNQRQPSKKASKGKGL 264
L++ + A + + T LRE T +R + K +
Sbjct: 639 LRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAV 687
>gi|157738611 coiled-coil alpha-helical rod protein 1 isoform 3
[Homo sapiens]
Length = 782
Score = 30.8 bits (68), Expect = 1.3
Identities = 64/289 (22%), Positives = 111/289 (38%), Gaps = 48/289 (16%)
Query: 2 SAEVKVTGQNQEQFLLLAKSAKGAALATLIHQVLEAPGVYVFGELLDMPNVRELAESDFA 61
S + KVT Q+QEQ +L +S + A + + + A G+ + EL R + A
Sbjct: 368 SLQEKVTSQSQEQ-AILQRSLQDKAAEVEVER-MGAKGLQL--ELSRAQEARRRWQQQTA 423
Query: 62 ST---FRLLT-------VFAYGTYADYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCI 111
S RL+ ++ T A A LP L +R + +
Sbjct: 424 SAEEQLRLVVNAVSSSQIWLETTMAKVEGAAAQLPSLNNRLSYAVRKVHTIR-------- 475
Query: 112 PYAVLLEALALRNVRQ--------LEDLVIEAVYADVLRGSLD---QRNQRLEVDYSIGR 160
++ LAL +RQ + D+ +E R LD Q + RL + +GR
Sbjct: 476 --GLIARKLALAQLRQESCPLPPPVTDVSLELQQLREERNRLDAELQLSARL-IQQEVGR 532
Query: 161 -----DIQRQDLSAIARTLQEWCVGCEVVLSGIEEQVSRANQHKEQQLGLKQQIESEVAN 215
+ +RQ LS +A+ L++ + L+ + Q+ A Q +Q+ E A+
Sbjct: 533 AREQGEAERQQLSKVAQQLEQELQQTQESLASLGLQLEVARQG-------QQESTEEAAS 585
Query: 216 LKKTIKVTTAAAAAATSQDPEQHLTELREPAPGTNQRQPSKKASKGKGL 264
L++ + A + + T LRE T +R + K +
Sbjct: 586 LRQELTQQQELYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAV 634
>gi|146262005 CTAGE family, member 6 [Homo sapiens]
Length = 777
Score = 30.8 bits (68), Expect = 1.3
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 127 QLEDLVIEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTL---QEWCVGCEV 183
Q E L E +Y + NQ+L+ I + ++D + R L + + + E
Sbjct: 362 QQESLQSENIY-------FESENQKLQQKLKIMTEFYQEDEMKLYRKLTVEENYRIEEEE 414
Query: 184 VLSGIEEQVSRANQHKEQQLGLKQQIESEV 213
LS +EE++SRA + E L + +E E+
Sbjct: 415 KLSKVEEKLSRATEQLETYRKLAKDLEEEL 444
>gi|190341068 forkhead-associated (FHA) phosphopeptide binding
domain 1 [Homo sapiens]
Length = 1412
Score = 30.8 bits (68), Expect = 1.3
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 184 VLSGIEEQVSRANQHKEQQLGLKQQIESEVANLKKTIKVTTAAAAAATSQDPEQHLTELR 243
V +EE+ +R + +E+ K+ +ES +A+ K+ K + QD E HLT+ +
Sbjct: 737 VKEALEEEQTRVQELEERLARQKEVLESSIAHEKRKAKEALESEKRKV-QDLENHLTQQK 795
Query: 244 E 244
E
Sbjct: 796 E 796
>gi|223555935 dynein, axonemal, heavy polypeptide 14 isoform 1 [Homo
sapiens]
Length = 4515
Score = 30.4 bits (67), Expect = 1.8
Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 165 QDLSAIARTLQEWCVGCE---------VVLSGIEEQVSRANQHKEQQLGLKQQIESEVAN 215
Q+L+ + TL+EW + C+ S I Q+ + Q + + ++I S++ N
Sbjct: 1199 QNLTLFSYTLEEW-MNCQRNWLYLEPVFHSSEIRRQLPAETELFSQVISMWKKIMSKIQN 1257
Query: 216 LKKTIKVTTAAAAAATSQDPEQHLTELRE 244
+ +++TT+A Q+ HL +++
Sbjct: 1258 KQNALQITTSAGVLEILQNCNIHLEHIKK 1286
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,876,799
Number of Sequences: 37866
Number of extensions: 338638
Number of successful extensions: 2002
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 1917
Number of HSP's gapped (non-prelim): 134
length of query: 275
length of database: 18,247,518
effective HSP length: 101
effective length of query: 174
effective length of database: 14,423,052
effective search space: 2509611048
effective search space used: 2509611048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.