Guide to the Human Genome
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Name: FSD1L Sequence: fasta or formatted (145aa) NCBI GI: 13994289
Description:

fibronectin type III and SPRY domain containing 1-like isoform 2

Referenced in:

Centrosome
Coiled-Coil Proteins
Fibronectin Family

Other entries for this name:
alt prot [530aa] fibronectin type III and SPRY domain containing 1-like isoform 3
alt prot [498aa] fibronectin type III and SPRY domain containing 1-like isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1          6           1
 C cysteine            2.8          4           1
 D aspartate           4.8          7           1
 E glutamate          11.7         17           2
 F phenylalanine       7.6         11           3
 G glycine             2.1          3           1
 H histidine           2.1          3           2
 I isoleucine          8.3         12           2
 K lysine              8.3         12           2
 L leucine            11.0         16           2
 M methionine          1.4          2           1
 N asparagine          8.3         12           2
 P proline             0.7          1           1
 Q glutamine           6.9         10           1
 R arginine            2.1          3           1
 S serine             11.0         16           2
 T threonine           3.4          5           1
 V valine              2.1          3           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fibronectin type III and SPRY domain containing 1-li... 
FSD1L                 0.757   fibronectin type III and SPRY domain containing 1-li...
FSD1L                 0.726   fibronectin type III and SPRY domain containing 1-l...
FSD1                  0.331   fibronectin type III and SPRY domain containing 1 [H...
TRIM63                0.190   muscle specific ring finger protein 1 
TRIM55                0.152   tripartite motif-containing 55 isoform 3 
TRIM55                0.152   tripartite motif-containing 55 isoform 1 
TRIM55                0.152   tripartite motif-containing 55 isoform 2 
TRIM54                0.125   ring finger protein 30 isoform 2 
MID1                  0.114   midline 1 
MID1                  0.114   midline 1 
MID1                  0.114   midline 1 
TRIM54                0.114   ring finger protein 30 isoform 1 
TRIM9                 0.087   tripartite motif protein 9 isoform 2 
TRIM9                 0.087   tripartite motif protein 9 isoform 1 
TRIM67                0.080   tripartite motif-containing 67 
TRIM36                0.072   tripartite motif-containing 36 isoform 1 
FSD2                  0.061   fibronectin type III and SPRY domain containing 2 [H...
TRIM3                 0.057   tripartite motif-containing 3 
TRIM3                 0.057   tripartite motif-containing 3 
IFT81                 0.053   intraflagellar transport 81-like isoform 1 
IFT81                 0.053   intraflagellar transport 81-like isoform 1 
CENPF                 0.049   centromere protein F 
ERC2                  0.046   cytomatrix protein p110 
MYH13                 0.046   myosin, heavy polypeptide 13, skeletal muscle [Homo...
TRIM75                0.042   tripartite motif-containing 75 
TRIP11                0.038   thyroid hormone receptor interactor 11 
AKAP9                 0.038   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.038   A-kinase anchor protein 9 isoform 3 
SYNE2                 0.038   spectrin repeat containing, nuclear envelope 2 isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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