Guide to the Human Genome
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Name: SYT1 Sequence: fasta or formatted (422aa) NCBI GI: 5032139
Description:

synaptotagmin I

Referenced in:

ER, Golgi, and the Secretory Pathway
Synapses

Other entries for this name:
alt mRNA [422aa] synaptotagmin I
alt mRNA [422aa] synaptotagmin I
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         27           2
 C cysteine            1.4          6           2
 D aspartate           6.2         26           3
 E glutamate           8.3         35           3
 F phenylalanine       4.5         19           1
 G glycine             5.9         25           2
 H histidine           2.1          9           2
 I isoleucine          4.3         18           2
 K lysine             13.3         56           4
 L leucine             9.5         40           2
 M methionine          2.6         11           1
 N asparagine          4.3         18           2
 P proline             5.0         21           2
 Q glutamine           3.3         14           1
 R arginine            1.9          8           2
 S serine              3.8         16           1
 T threonine           5.5         23           2
 V valine              8.3         35           3
 W tryptophan          0.9          4           1
 Y tyrosine            2.6         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synaptotagmin I 
SYT1                  1.000   synaptotagmin I 
SYT1                  1.000   synaptotagmin I 
SYT2                  0.755   synaptotagmin II 
SYT2                  0.755   synaptotagmin II 
SYT5                  0.543   synaptotagmin V 
SYT6                  0.330   synaptotagmin VI 
SYT7                  0.320   synaptotagmin VII 
SYT10                 0.318   synaptotagmin X 
SYT9                  0.316   synaptotagmin IX 
SYT8                  0.312   synaptotagmin VIII 
SYT3                  0.310   synaptotagmin III 
SYT3                  0.310   synaptotagmin III 
SYT3                  0.310   synaptotagmin III 
SYT11                 0.248   synaptotagmin XI 
SYT17                 0.242   B/K protein 
SYT4                  0.238   synaptotagmin IV 
DOC2B                 0.192   double C2-like domains, beta 
SYT15                 0.184   synaptotagmin XV isoform a 
DOC2A                 0.173   double C2-like domains, alpha 
RPH3A                 0.172   rabphilin 3A homolog isoform 1 
RPH3A                 0.172   rabphilin 3A homolog isoform 2 
SYT12                 0.163   synaptotagmin XII 
SYT13                 0.151   synaptotagmin XIII 
SYT15                 0.148   synaptotagmin XV isoform b 
SYTL4                 0.133   synaptotagmin-like 4 
SYTL4                 0.133   synaptotagmin-like 4 
LOC390213             0.126   PREDICTED: hypothetical protein LOC390213 
SYT14                 0.117   synaptotagmin XIV isoform 2 
SYT14                 0.117   synaptotagmin XIV isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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