Guide to the Human Genome
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Name: LOC100132214 Sequence: fasta or formatted (757aa) NCBI GI: 239743307
Description:

PREDICTED: similar to calcium-promoted Ras inactivator isoform 1

Referenced in:

Ras

Other entries for this name:
alt mRNA [757aa] PREDICTED: similar to calcium-promoted Ras inactivator isoform 2
alt prot [731aa] PREDICTED: similar to calcium-promoted Ras inactivator isoform 1
alt prot [731aa] PREDICTED: similar to calcium-promoted Ras inactivator isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         49           1
 C cysteine            2.2         17           2
 D aspartate           5.0         38           2
 E glutamate           7.8         59           2
 F phenylalanine       3.8         29           2
 G glycine             5.8         44           2
 H histidine           2.9         22           1
 I isoleucine          2.9         22           2
 K lysine              5.5         42           2
 L leucine            12.4         94           4
 M methionine          1.3         10           1
 N asparagine          2.5         19           2
 P proline             5.5         42           2
 Q glutamine           4.5         34           2
 R arginine            7.3         55           2
 S serine              7.5         57           3
 T threonine           5.4         41           2
 V valine              7.5         57           2
 W tryptophan          1.7         13           1
 Y tyrosine            1.7         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to calcium-promoted Ras inactiva... 
LOC100132214          1.000   PREDICTED: similar to calcium-promoted Ras inactiva...
RASA4                 0.995   RAS p21 protein activator 4 isoform 2 
RASA4                 0.980   RAS p21 protein activator 4 isoform 1 
LOC100132214          0.885   PREDICTED: similar to calcium-promoted Ras inactiva...
LOC100132214          0.885   PREDICTED: similar to calcium-promoted Ras inactiva...
RASAL1                0.432   RAS protein activator like 1 
RASA3                 0.184   RAS p21 protein activator 3 
RASA2                 0.183   RAS p21 protein activator 2 
RASAL2                0.071   RAS protein activator like 2 isoform 2 
RASAL2                0.071   RAS protein activator like 2 isoform 1 
DAB2IP                0.062   disabled homolog 2 interacting protein isoform 2 [Ho...
DAB2IP                0.062   disabled homolog 2 interacting protein isoform 1 [Ho...
SYNGAP1               0.060   synaptic Ras GTPase activating protein 1 
RASA1                 0.053   RAS p21 protein activator 1 isoform 1 
RASA1                 0.053   RAS p21 protein activator 1 isoform 2 
SYT7                  0.043   synaptotagmin VII 
SYT3                  0.043   synaptotagmin III 
SYT3                  0.043   synaptotagmin III 
SYT3                  0.043   synaptotagmin III 
RASAL3                0.041   RAS protein activator like 3 
SYT1                  0.041   synaptotagmin I 
SYT1                  0.041   synaptotagmin I 
SYT1                  0.041   synaptotagmin I 
SYT6                  0.040   synaptotagmin VI 
PRKCB                 0.039   protein kinase C, beta isoform 1 
PRKCB                 0.039   protein kinase C, beta isoform 2 
SYT5                  0.039   synaptotagmin V 
SYT9                  0.038   synaptotagmin IX 
PRKCG                 0.037   protein kinase C, gamma 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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