Guide to the Human Genome
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Name: RAB11FIP5 Sequence: fasta or formatted (653aa) NCBI GI: 24308075
Description:

RAB11 family interacting protein 5 (class I)

Referenced in:

Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         57           3
 C cysteine            0.6          4           1
 D aspartate           4.0         26           2
 E glutamate           7.5         49           3
 F phenylalanine       1.8         12           2
 G glycine             8.4         55           2
 H histidine           3.1         20           4
 I isoleucine          2.6         17           1
 K lysine              6.4         42           3
 L leucine            10.0         65           3
 M methionine          1.5         10           1
 N asparagine          1.2          8           2
 P proline             6.9         45           2
 Q glutamine           4.4         29           1
 R arginine            6.9         45           2
 S serine             13.9         91           3
 T threonine           4.6         30           2
 V valine              4.7         31           2
 W tryptophan          1.1          7           1
 Y tyrosine            1.5         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAB11 family interacting protein 5 (class I) 
RAB11FIP1             0.226   RAB11 family interacting protein 1 isoform 1 
RAB11FIP1             0.190   RAB11 family interacting protein 1 isoform 3 
RAB11FIP2             0.137   RAB11 family interacting protein 2 (class I) 
RAB11FIP1             0.037   RAB11 family interacting protein 1 isoform 2 
NOLC1                 0.018   nucleolar and coiled-body phosphoprotein 1 
TNRC18                0.017   trinucleotide repeat containing 18 
PALM3                 0.013   hypothetical protein LOC342979 
KDM6B                 0.013   lysine (K)-specific demethylase 6B 
FLJ37078              0.013   hypothetical protein LOC222183 
TXLNA                 0.012   taxilin 
MCTP1                 0.012   multiple C2 domains, transmembrane 1 isoform S [Homo...
MCTP1                 0.012   multiple C2 domains, transmembrane 1 isoform L [Hom...
BCL9L                 0.011   B-cell CLL/lymphoma 9-like 
TGOLN2                0.011   trans-golgi network protein 2 
FLG                   0.011   filaggrin 
RAB11FIP3             0.010   rab11-family interacting protein 3 isoform 2 
RAB11FIP3             0.010   rab11-family interacting protein 3 isoform 1 
ZNF202                0.010   zinc finger protein 202 
C9orf75               0.010   hypothetical protein LOC286262 isoform 2 
C9orf75               0.010   hypothetical protein LOC286262 isoform 1 
CACNA1B               0.010   calcium channel, voltage-dependent, N type, alpha 1B ...
UNC13A                0.010   unc-13 homolog A 
SRRM2                 0.010   splicing coactivator subunit SRm300 
UNC13C                0.009   unc-13 homolog C 
PNN                   0.009   pinin, desmosome associated protein 
CDC2L5                0.009   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.009   cell division cycle 2-like 5 isoform 2 
CRKRS                 0.009   Cdc2-related kinase, arginine/serine-rich isoform 2...
CRKRS                 0.009   Cdc2-related kinase, arginine/serine-rich isoform 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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