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Search of human proteins with 7662344
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7662344 U-box domain containing 5 isoform a [Homo sapiens]
(541 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7662344 U-box domain containing 5 isoform a [Homo sapiens] 1107 0.0
gi|40806196 U-box domain containing 5 isoform b [Homo sapiens] 967 0.0
gi|38327029 ubiquitination factor E4A [Homo sapiens] 41 0.002
gi|239758058 PREDICTED: similar to mucin, partial [Homo sapiens] 40 0.005
gi|38327034 ubiquitination factor E4B isoform 2 [Homo sapiens] 40 0.005
gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens] 40 0.005
gi|118442828 beta-tubulin cofactor E [Homo sapiens] 39 0.016
gi|4507375 beta-tubulin cofactor E [Homo sapiens] 39 0.016
gi|31377566 ring finger protein 168 [Homo sapiens] 37 0.035
gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo sap... 37 0.046
gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo sap... 37 0.046
gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo sap... 37 0.046
gi|7662346 ADNP homeobox 2 [Homo sapiens] 35 0.13
gi|195927030 Cas-Br-M (murine) ecotropic retroviral transforming... 35 0.13
gi|195927027 Cas-Br-M (murine) ecotropic retroviral transforming... 35 0.13
gi|13375636 PR domain containing 14 [Homo sapiens] 35 0.17
gi|166795252 hypothetical protein LOC23359 [Homo sapiens] 34 0.30
gi|88953346 PREDICTED: Tripartite motif-containing protein 43-li... 34 0.30
gi|33859668 Rabring 7 [Homo sapiens] 34 0.30
gi|20270353 tripartite motif-containing 43 [Homo sapiens] 34 0.30
gi|8923898 zinc finger protein 313 [Homo sapiens] 34 0.39
gi|239752529 PREDICTED: similar to mucin [Homo sapiens] 33 0.51
gi|4504141 glutamate receptor, metabotropic 4 [Homo sapiens] 33 0.51
gi|189571685 WD repeat, sterile alpha motif and U-box domain con... 33 0.51
gi|189571683 WD repeat, sterile alpha motif and U-box domain con... 33 0.51
gi|189571681 WD repeat, sterile alpha motif and U-box domain con... 33 0.51
gi|37595555 ring finger protein 125 [Homo sapiens] 33 0.51
gi|56181387 STIP1 homology and U-box containing protein 1 [Homo ... 33 0.66
gi|22027612 TNF receptor-associated factor 2 [Homo sapiens] 33 0.66
gi|112790163 metal-regulatory transcription factor 1 [Homo sapiens] 33 0.66
>gi|7662344 U-box domain containing 5 isoform a [Homo sapiens]
Length = 541
Score = 1107 bits (2862), Expect = 0.0
Identities = 541/541 (100%), Positives = 541/541 (100%)
Query: 1 MVINLCLPQFRPRIHCNKISADGYEVENLISEDLTKRSHGFRTEYFIKPPVYVTVSFPFN 60
MVINLCLPQFRPRIHCNKISADGYEVENLISEDLTKRSHGFRTEYFIKPPVYVTVSFPFN
Sbjct: 1 MVINLCLPQFRPRIHCNKISADGYEVENLISEDLTKRSHGFRTEYFIKPPVYVTVSFPFN 60
Query: 61 VEICRINIDLTAGGGQNVTGLEMYTSASSSRVSWNTPQCRTLGPAEPSVPDKEAFTLVGK 120
VEICRINIDLTAGGGQNVTGLEMYTSASSSRVSWNTPQCRTLGPAEPSVPDKEAFTLVGK
Sbjct: 61 VEICRINIDLTAGGGQNVTGLEMYTSASSSRVSWNTPQCRTLGPAEPSVPDKEAFTLVGK 120
Query: 121 VLLKNQSQVVFSHRGFKARPPFGAMEATLPSPAVVAQELWNKGALSLSHVAHLRICITHV 180
VLLKNQSQVVFSHRGFKARPPFGAMEATLPSPAVVAQELWNKGALSLSHVAHLRICITHV
Sbjct: 121 VLLKNQSQVVFSHRGFKARPPFGAMEATLPSPAVVAQELWNKGALSLSHVAHLRICITHV 180
Query: 181 TGGGIPCIKRLEVWGQPAKTCSQEVIDSILLVTSENLPQDVALQAPALPMESDCDPGDQP 240
TGGGIPCIKRLEVWGQPAKTCSQEVIDSILLVTSENLPQDVALQAPALPMESDCDPGDQP
Sbjct: 181 TGGGIPCIKRLEVWGQPAKTCSQEVIDSILLVTSENLPQDVALQAPALPMESDCDPGDQP 240
Query: 241 ESQQAPSSLQKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWG 300
ESQQAPSSLQKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWG
Sbjct: 241 ESQQAPSSLQKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWG 300
Query: 301 RVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTALAVIPSSIVLP 360
RVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTALAVIPSSIVLP
Sbjct: 301 RVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTALAVIPSSIVLP 360
Query: 361 SQKRKIEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNEPSLTHMDCSTGP 420
SQKRKIEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNEPSLTHMDCSTGP
Sbjct: 361 SQKRKIEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNEPSLTHMDCSTGP 420
Query: 421 LSHEQKLSQSLEIALASTLGSMPSFTARLTRGQLQHLGTRGSNTSWRPGTGSEQPGSILG 480
LSHEQKLSQSLEIALASTLGSMPSFTARLTRGQLQHLGTRGSNTSWRPGTGSEQPGSILG
Sbjct: 421 LSHEQKLSQSLEIALASTLGSMPSFTARLTRGQLQHLGTRGSNTSWRPGTGSEQPGSILG 480
Query: 481 PECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLRVH 540
PECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLRVH
Sbjct: 481 PECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLRVH 540
Query: 541 F 541
F
Sbjct: 541 F 541
>gi|40806196 U-box domain containing 5 isoform b [Homo sapiens]
Length = 487
Score = 967 bits (2499), Expect = 0.0
Identities = 485/541 (89%), Positives = 486/541 (89%), Gaps = 54/541 (9%)
Query: 1 MVINLCLPQFRPRIHCNKISADGYEVENLISEDLTKRSHGFRTEYFIKPPVYVTVSFPFN 60
MVINLCLPQFRPRIHCNKISADGYEVENLISEDLTKRSHGFRTEYFIKPPVYVTVSFPFN
Sbjct: 1 MVINLCLPQFRPRIHCNKISADGYEVENLISEDLTKRSHGFRTEYFIKPPVYVTVSFPFN 60
Query: 61 VEICRINIDLTAGGGQNVTGLEMYTSASSSRVSWNTPQCRTLGPAEPSVPDKEAFTLVGK 120
VEICRINIDLTAGGGQNVTGLEMYTSASSSRVSWNTPQCRTLGPAEPSVPDKEAFTLVGK
Sbjct: 61 VEICRINIDLTAGGGQNVTGLEMYTSASSSRVSWNTPQCRTLGPAEPSVPDKEAFTLVGK 120
Query: 121 VLLKNQSQVVFSHRGFKARPPFGAMEATLPSPAVVAQELWNKGALSLSHVAHLRICITHV 180
VLLKNQSQVVFSHRGFKARPPFGAMEATLPSPAVVAQELWNKGALSLSHVAHLRICITHV
Sbjct: 121 VLLKNQSQVVFSHRGFKARPPFGAMEATLPSPAVVAQELWNKGALSLSHVAHLRICITHV 180
Query: 181 TGGGIPCIKRLEVWGQPAKTCSQEVIDSILLVTSENLPQDVALQAPALPMESDCDPGDQP 240
TGGGIPCIKRLEVWGQPAKTCSQEVIDSILLVTSENLPQDVALQAPALPMESDCDPGDQP
Sbjct: 181 TGGGIPCIKRLEVWGQPAKTCSQEVIDSILLVTSENLPQDVALQAPALPMESDCDPGDQP 240
Query: 241 ESQQAPSSLQKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWG 300
ESQQAPSSLQKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWG
Sbjct: 241 ESQQAPSSLQKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWG 300
Query: 301 RVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTALAVIPSSIVLP 360
RVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTALAVIPSSIVLP
Sbjct: 301 RVPSDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTALAVIPSSIVLP 360
Query: 361 SQKRKIEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNEPSLTHMDCSTGP 420
SQKRKIEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNEPSLTHMDCST
Sbjct: 361 SQKRKIEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNEPSLTHMDCSTE- 419
Query: 421 LSHEQKLSQSLEIALASTLGSMPSFTARLTRGQLQHLGTRGSNTSWRPGTGSEQPGSILG 480
+PG SILG
Sbjct: 420 ----------------------------------------------QPG-------SILG 426
Query: 481 PECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLRVH 540
PECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLRVH
Sbjct: 427 PECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLRVH 486
Query: 541 F 541
F
Sbjct: 487 F 487
>gi|38327029 ubiquitination factor E4A [Homo sapiens]
Length = 1073
Score = 41.2 bits (95), Expect = 0.002
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 250 QKLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKV-IDQSTLEKCNRSEATWGRVPSDPFT 308
Q+ E D +EFLDPI +M P++LPS +V +D+ST+ + S+ T DPF
Sbjct: 986 QQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQT------DPFN 1039
Query: 309 GVAFTPHSQPLPHPSLKARIDHFLLQ 334
T Q P+ LK +I +L +
Sbjct: 1040 RSPLT-MDQIRPNTELKEKIQRWLAE 1064
>gi|239758058 PREDICTED: similar to mucin, partial [Homo sapiens]
Length = 967
Score = 40.0 bits (92), Expect = 0.005
Identities = 53/195 (27%), Positives = 75/195 (38%), Gaps = 13/195 (6%)
Query: 277 LLPSGKVIDQST---LEKCNRSEATWGRVPSDPF--TGVAFTPHSQPLPHPSLKARIDHF 331
L+ + ++I ST +E PS PF T PHS P SL + I
Sbjct: 690 LIATTEIISHSTPSYTSSIATTETPSHSTPSFPFSITTTETIPHSTP----SLNSAITTT 745
Query: 332 -LLQHSIPGCHLLGRAQTALAVIPSSIVLPSQKRKIEQAEHVPDSNFGVNASCFSATSPL 390
+ HSIPG T+ P S + H P S F + + ATS
Sbjct: 746 ETMSHSIPG--FASSITTSETTSPFPPRFTSLITTTKTTSHSPPS-FTASLTSTEATSHS 802
Query: 391 VLPTTSEHTAKKMKATNEPSLTHMDCSTGPLSHEQKLSQSLEIALASTLGSMPSFTARLT 450
L TS + K+ + + PSLT + +TG SH S +T S SFT+ +
Sbjct: 803 PLSFTSVIASTKITSQSTPSLTSLITTTGTSSHNTLGLSSSVDTTKTTSHSTASFTSLIA 862
Query: 451 RGQLQHLGTRGSNTS 465
+ T G +S
Sbjct: 863 TTETTSHNTPGFTSS 877
Score = 33.5 bits (75), Expect = 0.51
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 395 TSEHTAKKMKATNEPSLTHMDCSTGPLSHEQKLSQSLEIALASTLGSMPSFTARLT 450
TS TA + + + PS T +TG SH + SL ST S PSFT+ +T
Sbjct: 362 TSLITATESTSHSPPSFTSAIATTGITSHSTPIFTSLIATTDSTSHSTPSFTSSIT 417
Score = 30.0 bits (66), Expect = 5.6
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 385 SATSPLVLPTTSEHTAKKMKATNEPSLTHMDCSTGPLSHEQKLSQSLEIALASTLGSMPS 444
S TS + T+ HT PS T + +T SH SL A ST S PS
Sbjct: 326 SFTSSIATTETTSHTP--------PSFTSLITTTETPSHSNPSFTSLITATESTSHSPPS 377
Query: 445 FTARL-TRGQLQH 456
FT+ + T G H
Sbjct: 378 FTSAIATTGITSH 390
Score = 29.3 bits (64), Expect = 9.6
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
Query: 382 SCFSATSPLVLPTTSEHTAKKMKAT---------NEPSLTHMDCSTGPLSHEQKLSQSLE 432
S S TS + T HT + + PSLT +T SH + S
Sbjct: 170 SSLSYTSSIATSETPSHTVPSFTSLITTTESTSHSNPSLTSAITTTETRSHSPPIFTSSI 229
Query: 433 IALASTLGSMPSFTARLT 450
+ +T S PSFT+ +T
Sbjct: 230 TTIETTSHSTPSFTSLMT 247
>gi|38327034 ubiquitination factor E4B isoform 2 [Homo sapiens]
Length = 1173
Score = 40.0 bits (92), Expect = 0.005
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 258 DVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWGRVPSDPFTGVAFTPHSQ 317
D P+EF DP+ +M P+ LPSG ++D+S + + + P+DPF T S
Sbjct: 1098 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNS------PTDPFNRQTLT-ESM 1150
Query: 318 PLPHPSLKARIDHFL 332
P P LK +I ++
Sbjct: 1151 LEPVPELKEQIQAWM 1165
>gi|157739864 ubiquitination factor E4B isoform 1 [Homo sapiens]
Length = 1302
Score = 40.0 bits (92), Expect = 0.005
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 258 DVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWGRVPSDPFTGVAFTPHSQ 317
D P+EF DP+ +M P+ LPSG ++D+S + + + P+DPF T S
Sbjct: 1227 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNS------PTDPFNRQTLT-ESM 1279
Query: 318 PLPHPSLKARIDHFL 332
P P LK +I ++
Sbjct: 1280 LEPVPELKEQIQAWM 1294
>gi|118442828 beta-tubulin cofactor E [Homo sapiens]
Length = 527
Score = 38.5 bits (88), Expect = 0.016
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 16/140 (11%)
Query: 371 HVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNE----PSLTHMDCSTGPLSHEQK 426
H PD+ G S F + LV+ +++ + NE PSL + C PL+ E K
Sbjct: 293 HFPDAGIGCKTSMFPSLKYLVV---NDNQISQWSFFNELEKLPSLRALSCLRNPLTKEDK 349
Query: 427 LSQSLEIALASTLGSMPSFTARLTRGQLQHLGTRGSNTSWRPGTGSE--QPGSILGPECA 484
+++ + + +++G + + L + ++ R + +R G+E Q G PE
Sbjct: 350 EAETARLLIIASIGQLKT----LNKCEILPEERRRAELDYRKAFGNEWKQAGGHKDPE-- 403
Query: 485 SCKRVFSPYFKKEPVYQLPC 504
R+ + P YQ C
Sbjct: 404 -KNRLSEEFLTAHPRYQFLC 422
>gi|4507375 beta-tubulin cofactor E [Homo sapiens]
Length = 527
Score = 38.5 bits (88), Expect = 0.016
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 16/140 (11%)
Query: 371 HVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNE----PSLTHMDCSTGPLSHEQK 426
H PD+ G S F + LV+ +++ + NE PSL + C PL+ E K
Sbjct: 293 HFPDAGIGCKTSMFPSLKYLVV---NDNQISQWSFFNELEKLPSLRALSCLRNPLTKEDK 349
Query: 427 LSQSLEIALASTLGSMPSFTARLTRGQLQHLGTRGSNTSWRPGTGSE--QPGSILGPECA 484
+++ + + +++G + + L + ++ R + +R G+E Q G PE
Sbjct: 350 EAETARLLIIASIGQLKT----LNKCEILPEERRRAELDYRKAFGNEWKQAGGHKDPE-- 403
Query: 485 SCKRVFSPYFKKEPVYQLPC 504
R+ + P YQ C
Sbjct: 404 -KNRLSEEFLTAHPRYQFLC 422
>gi|31377566 ring finger protein 168 [Homo sapiens]
Length = 571
Score = 37.4 bits (85), Expect = 0.035
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 482 ECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVAS 533
+C C + EPV LPC H LC+PC + C C+R V+S
Sbjct: 15 QCGICMEILV-----EPV-TLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 60
>gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 37.0 bits (84), Expect = 0.046
Identities = 29/100 (29%), Positives = 36/100 (36%), Gaps = 11/100 (11%)
Query: 440 GSMPSFTARLTRGQLQHLGTRGSNTSWRPGTGSEQPGSILGP----ECASCKRVFSPYFK 495
GS PS L+ + G G GS G IL P EC C F FK
Sbjct: 17 GSGPSSPGSLSAPRSPSRGEDQEEEEEEEGDGSPGSGPILPPASPVECLICVSSFDGVFK 76
Query: 496 KEPVYQLPCGHLLCRPCLGEKQRSL-----PMTCTACQRP 530
+L CGH+ C CL + + C C+ P
Sbjct: 77 LPK--RLDCGHVFCLECLARLSLATAGGGNAVACPVCRAP 114
>gi|169214500 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 37.0 bits (84), Expect = 0.046
Identities = 29/100 (29%), Positives = 36/100 (36%), Gaps = 11/100 (11%)
Query: 440 GSMPSFTARLTRGQLQHLGTRGSNTSWRPGTGSEQPGSILGP----ECASCKRVFSPYFK 495
GS PS L+ + G G GS G IL P EC C F FK
Sbjct: 17 GSGPSSPGSLSAPRSPSRGEDQEEEEEEEGDGSPGSGPILPPASPVECLICVSSFDGVFK 76
Query: 496 KEPVYQLPCGHLLCRPCLGEKQRSL-----PMTCTACQRP 530
+L CGH+ C CL + + C C+ P
Sbjct: 77 LPK--RLDCGHVFCLECLARLSLATAGGGNAVACPVCRAP 114
>gi|169213453 PREDICTED: hypothetical protein LOC646862 [Homo
sapiens]
Length = 329
Score = 37.0 bits (84), Expect = 0.046
Identities = 29/100 (29%), Positives = 36/100 (36%), Gaps = 11/100 (11%)
Query: 440 GSMPSFTARLTRGQLQHLGTRGSNTSWRPGTGSEQPGSILGP----ECASCKRVFSPYFK 495
GS PS L+ + G G GS G IL P EC C F FK
Sbjct: 17 GSGPSSPGSLSAPRSPSRGEDQEEEEEEEGDGSPGSGPILPPASPVECLICVSSFDGVFK 76
Query: 496 KEPVYQLPCGHLLCRPCLGEKQRSL-----PMTCTACQRP 530
+L CGH+ C CL + + C C+ P
Sbjct: 77 LPK--RLDCGHVFCLECLARLSLATAGGGNAVACPVCRAP 114
>gi|7662346 ADNP homeobox 2 [Homo sapiens]
Length = 1131
Score = 35.4 bits (80), Expect = 0.13
Identities = 45/197 (22%), Positives = 74/197 (37%), Gaps = 23/197 (11%)
Query: 196 QPAKTCSQEVIDSILLVTSENLPQDVALQAPALPMESDCDPGDQPESQQ-APSSLQKLAE 254
QP ++ V S+L + P + L P P+ PG P S P LQ ++
Sbjct: 376 QPVGPVNKSVGTSVLPINQTVRPGVLPLTQPVGPINRPVGPGVLPVSPSVTPGVLQAVSP 435
Query: 255 IIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWGRVPSDPFTGVAFTP 314
+ V + ++P + P+G++ + AT G +P+ P
Sbjct: 436 GVLSVSR----AVPSGVLPAGQMTPAGQMTPAGVIP---GQTATSGVLPTGQMVQSGVLP 488
Query: 315 HSQPLPHPSLKARIDHFLLQHSIPGCHLLGRAQTALAVIPSSIVLPSQKRKIEQAEHVPD 374
Q P L PG R +A V+PS ++ P+Q + + VP
Sbjct: 489 VGQTAPSRVLP------------PGQTAPLRVISAGQVVPSGLLSPNQ--TVSSSAVVP- 533
Query: 375 SNFGVNASCFSATSPLV 391
N GVN+ + P+V
Sbjct: 534 VNQGVNSGVLQLSQPVV 550
>gi|195927030 Cas-Br-M (murine) ecotropic retroviral transforming
sequence c isoform 2 [Homo sapiens]
Length = 428
Score = 35.4 bits (80), Expect = 0.13
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 503 PCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLRVH 540
PCGHLLC CL Q S TC C+ + + + ++
Sbjct: 319 PCGHLLCSCCLAAWQHSDSQTCPFCRCEIKGWEAVSIY 356
>gi|195927027 Cas-Br-M (murine) ecotropic retroviral transforming
sequence c isoform 1 [Homo sapiens]
Length = 474
Score = 35.4 bits (80), Expect = 0.13
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 503 PCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLRVH 540
PCGHLLC CL Q S TC C+ + + + ++
Sbjct: 365 PCGHLLCSCCLAAWQHSDSQTCPFCRCEIKGWEAVSIY 402
>gi|13375636 PR domain containing 14 [Homo sapiens]
Length = 571
Score = 35.0 bits (79), Expect = 0.17
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 11/74 (14%)
Query: 467 RPGTGSEQPGSILGPECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTA 526
+P SE+ S G C C +VF+ + ++ HL PC+ + R P C+
Sbjct: 388 QPSGPSEE--SAEGYRCERCGKVFTYKYYRDK-------HLKYTPCVDKGDRKFP--CSL 436
Query: 527 CQRPVASQDVLRVH 540
C+R +D LR+H
Sbjct: 437 CKRSFEKRDRLRIH 450
>gi|166795252 hypothetical protein LOC23359 [Homo sapiens]
Length = 539
Score = 34.3 bits (77), Expect = 0.30
Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 10/110 (9%)
Query: 404 KATNEPSLTHMDCSTGPLSHEQKLSQSLEIALASTLGSMPSFTARLTRGQLQHLGTRGSN 463
++T++P+L + SH SQ LE L+ + S + T L G
Sbjct: 396 RSTSDPTLCTSSMAGDASSHRPSCSQDLEAGLSEAVPGSASMSRSATAACRAQLSPAGDP 455
Query: 464 TSWR----------PGTGSEQPGSILGPECASCKRVFSPYFKKEPVYQLP 503
+W+ P T E+P S++ + + RV F + LP
Sbjct: 456 DTWKTDQRPTPEPFPATSKERPRSLVDSKAYADARVLVAKFLEHSHCALP 505
>gi|88953346 PREDICTED: Tripartite motif-containing protein 43-like
protein 1 [Homo sapiens]
Length = 446
Score = 34.3 bits (77), Expect = 0.30
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 504 CGHLLCRP--CLGEKQRSLPMTCTACQRPVASQD 535
CGH CRP CL ++ P C AC+ P D
Sbjct: 30 CGHSFCRPCLCLSWEEAQSPANCPACREPSPKMD 63
>gi|33859668 Rabring 7 [Homo sapiens]
Length = 304
Score = 34.3 bits (77), Expect = 0.30
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 479 LGPECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDVLR 538
+G EC CK Y +E V QLPC H C+ L TC C++ + +D R
Sbjct: 224 MGLECPVCKE---DYTVEEEVRQLPCNHFFHSSCI-VPWLELHDTCPVCRKSLNGEDSTR 279
>gi|20270353 tripartite motif-containing 43 [Homo sapiens]
Length = 446
Score = 34.3 bits (77), Expect = 0.30
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 504 CGHLLCRP--CLGEKQRSLPMTCTACQRPVASQD 535
CGH CRP CL ++ P C AC+ P D
Sbjct: 30 CGHSFCRPCLCLSWEEAQSPANCPACREPSPKMD 63
>gi|8923898 zinc finger protein 313 [Homo sapiens]
Length = 228
Score = 33.9 bits (76), Expect = 0.39
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 483 CASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVA 532
C C V+ ++PV Q+PCGH+ C CL E + C C+ +A
Sbjct: 29 CPVCLEVY-----EKPV-QVPCGHVFCSACLQECLKPKKPVCGVCRSALA 72
>gi|239752529 PREDICTED: similar to mucin [Homo sapiens]
Length = 594
Score = 33.5 bits (75), Expect = 0.51
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 395 TSEHTAKKMKATNEPSLTHMDCSTGPLSHEQKLSQSLEIALASTLGSMPSFTARLT 450
TS TA + + + PS T +TG SH + SL ST S PSFT+ +T
Sbjct: 191 TSLITATESTSHSPPSFTSAIATTGITSHSTPIFTSLIATTDSTSHSTPSFTSSIT 246
Score = 30.0 bits (66), Expect = 5.6
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 385 SATSPLVLPTTSEHTAKKMKATNEPSLTHMDCSTGPLSHEQKLSQSLEIALASTLGSMPS 444
S TS + T+ HT PS T + +T SH SL A ST S PS
Sbjct: 155 SFTSSIATTETTSHTP--------PSFTSLITTTETPSHSNPSFTSLITATESTSHSPPS 206
Query: 445 FTARL-TRGQLQH 456
FT+ + T G H
Sbjct: 207 FTSAIATTGITSH 219
Score = 29.6 bits (65), Expect = 7.3
Identities = 25/79 (31%), Positives = 33/79 (41%)
Query: 387 TSPLVLPTTSEHTAKKMKATNEPSLTHMDCSTGPLSHEQKLSQSLEIALASTLGSMPSFT 446
TS L TS T K + + PS T + ST SH S +T S PSFT
Sbjct: 449 TSHLPPRFTSLITTTKTTSHSPPSFTALITSTKTTSHSTPSFTSSIATTETTSHSPPSFT 508
Query: 447 ARLTRGQLQHLGTRGSNTS 465
+ T + T G ++S
Sbjct: 509 SSSTTTETHSHSTPGFSSS 527
Score = 29.3 bits (64), Expect = 9.6
Identities = 38/146 (26%), Positives = 51/146 (34%), Gaps = 7/146 (4%)
Query: 307 FTGVAFTPHSQPLPHPSLKARIDHF-LLQHSIPG-CHLLGRAQTALAVIPSSIVLPSQKR 364
FT + T S PS + I + HS P L+ +T PS L +
Sbjct: 224 FTSLIATTDSTSHSTPSFTSSITSTETISHSTPSFSSLITATKTTSHSTPSLTSLITTTN 283
Query: 365 KIEQAEHVPDSNFGVNASCFSATSPLVLPTTSEHTAKKMKATNEPSLTHMDCSTGPLSHE 424
+ + S S L TT E T+ + PSLT +TG SH
Sbjct: 284 TSHSTPSLTSLVTSTETASHSTPSFTSLITTIEATSH-----STPSLTSSITTTGTTSHS 338
Query: 425 QKLSQSLEIALASTLGSMPSFTARLT 450
L ST S PS T+ +T
Sbjct: 339 TPSFTYLTTITESTSHSTPSLTSAIT 364
>gi|4504141 glutamate receptor, metabotropic 4 [Homo sapiens]
Length = 912
Score = 33.5 bits (75), Expect = 0.51
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 11/73 (15%)
Query: 456 HLGTRGSNTSWRPGTGSEQPGSILGPECASCKRVFSPYFKKEPVYQLPC-GHLLCRPCLG 514
HL R W PG+G + P SI C P +K+ V +PC H C PC G
Sbjct: 498 HLHLRIERMHW-PGSGQQLPRSICSLPC-------QPGERKKTVKGMPCCWH--CEPCTG 547
Query: 515 EKQRSLPMTCTAC 527
+ + TC C
Sbjct: 548 YQYQVDRYTCKTC 560
>gi|189571685 WD repeat, sterile alpha motif and U-box domain
containing 1 [Homo sapiens]
Length = 476
Score = 33.5 bits (75), Expect = 0.51
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 251 KLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWGRVPSDPFTGV 310
K+ + +P+EF+ PIT E+M P++ G ++ +E + + P T +
Sbjct: 396 KVKSLSSGIPDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKR-----TSPMTNL 450
Query: 311 AFTPHSQPLPHPSLKARIDHFLLQH 335
P + P+ +LK I+ +L H
Sbjct: 451 VL-PSAVLTPNRTLKMAINRWLETH 474
>gi|189571683 WD repeat, sterile alpha motif and U-box domain
containing 1 [Homo sapiens]
Length = 476
Score = 33.5 bits (75), Expect = 0.51
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 251 KLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWGRVPSDPFTGV 310
K+ + +P+EF+ PIT E+M P++ G ++ +E + + P T +
Sbjct: 396 KVKSLSSGIPDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKR-----TSPMTNL 450
Query: 311 AFTPHSQPLPHPSLKARIDHFLLQH 335
P + P+ +LK I+ +L H
Sbjct: 451 VL-PSAVLTPNRTLKMAINRWLETH 474
>gi|189571681 WD repeat, sterile alpha motif and U-box domain
containing 1 [Homo sapiens]
Length = 476
Score = 33.5 bits (75), Expect = 0.51
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 251 KLAEIIQDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWGRVPSDPFTGV 310
K+ + +P+EF+ PIT E+M P++ G ++ +E + + P T +
Sbjct: 396 KVKSLSSGIPDEFICPITRELMKDPVIASDGYSYEKEAMENWISKKKR-----TSPMTNL 450
Query: 311 AFTPHSQPLPHPSLKARIDHFLLQH 335
P + P+ +LK I+ +L H
Sbjct: 451 VL-PSAVLTPNRTLKMAINRWLETH 474
>gi|37595555 ring finger protein 125 [Homo sapiens]
Length = 232
Score = 33.5 bits (75), Expect = 0.51
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 482 ECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQRPVASQDV 536
+CA C V +PV + CGH+ CR C+ ++ TC C+ + S+ V
Sbjct: 36 DCAVCLEVLH-----QPV-RTRCGHVFCRSCIATSLKNNKWTCPYCRAYLPSEGV 84
>gi|56181387 STIP1 homology and U-box containing protein 1 [Homo
sapiens]
Length = 303
Score = 33.1 bits (74), Expect = 0.66
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 257 QDVPEEFLDPITLEIMPCPMLLPSGKVIDQSTLEKCNRSEATWGRVPSDPFTGVAFTPHS 316
+D+P+ I+ E+M P + PSG D+ +E+ + + V P T
Sbjct: 225 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT------QE 278
Query: 317 QPLPHPSLKARIDHFLLQH 335
Q +P+ ++K ID F+ ++
Sbjct: 279 QLIPNLAMKEVIDAFISEN 297
>gi|22027612 TNF receptor-associated factor 2 [Homo sapiens]
Length = 501
Score = 33.1 bits (74), Expect = 0.66
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 8/69 (11%)
Query: 461 GSNTSWRPGTGSEQPGSILGPE--CASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQR 518
GS +PG G+ L + C++C+ V + P +Q CGH C CL
Sbjct: 10 GSLELLQPGFSKTLLGTKLEAKYLCSACRNVL-----RRP-FQAQCGHRYCSFCLASILS 63
Query: 519 SLPMTCTAC 527
S P C AC
Sbjct: 64 SGPQNCAAC 72
>gi|112790163 metal-regulatory transcription factor 1 [Homo sapiens]
Length = 753
Score = 33.1 bits (74), Expect = 0.66
Identities = 74/366 (20%), Positives = 122/366 (33%), Gaps = 68/366 (18%)
Query: 219 QDVALQAPALPMESDCDPGDQPESQQAPSSLQKL-------AEIIQDVPEEFLDPITLEI 271
QD++ +PA+ ES D Q+ P L AE + DVP + +L +
Sbjct: 360 QDLSTISPAIIFESMFQNSDDTAIQEDPQQTASLTESFNGDAESVSDVPPSTGNSASLSL 419
Query: 272 MPCPMLLPSGKVIDQSTLEKCNRSEATWGRVPSDPFTG------------VAFTPHSQPL 319
P++L G L + A P P G P P+
Sbjct: 420 ---PLVLQPGLSEPPQPLLPASAPSAP----PPAPSLGPGSQQAAFGNPPALLQPPEVPV 472
Query: 320 PHPSLKARIDHFLLQHS------IPGCHLLGRAQTALAVIPSSIVLPSQKRKIEQAEHVP 373
PH + A L H +PG ++ A + A + S++ P+ + +
Sbjct: 473 PHSTQFAANHQEFLPHPQAPQPIVPGLSVVAGASASAAAVASAVAAPAPPQSTTEPLPAM 532
Query: 374 DSNFGVNASCFSATSPLVLPTTSEHTA--KKMKATNEPSLTHM--DCSTGPLSHEQ---- 425
+ A+ +P + T + +TA + E +L + ++ P + EQ
Sbjct: 533 VQTLPLGANSVLTNNPTITITPTPNTAILQSSLVMGEQNLQWILNGATSSPQNQEQIQQA 592
Query: 426 ----KLSQSLEIALASTLG--------SMPSFTARLTRGQLQHLGTRGS----NTSWRPG 469
K+ + + +AS+ G S+P + R S +S R G
Sbjct: 593 SKVEKVFFTTAVPVASSPGSSVQQIGLSVPVIIIKQEEACQCQCACRDSAKERASSRRKG 652
Query: 470 TGSEQPGSILGPECASCKRVFSPYFKKEPVYQLPCGHLLCRPCLGEKQRSLPMTCTACQR 529
S P PE SP P QLP P G +LP +C ++
Sbjct: 653 CSSPPP-----PEP-------SPQAPDGPSLQLPAQTFSSAPVPGSSSSTLPSSCEQSRQ 700
Query: 530 PVASQD 535
D
Sbjct: 701 AETPSD 706
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,923,669
Number of Sequences: 37866
Number of extensions: 1216278
Number of successful extensions: 3713
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 3603
Number of HSP's gapped (non-prelim): 193
length of query: 541
length of database: 18,247,518
effective HSP length: 107
effective length of query: 434
effective length of database: 14,195,856
effective search space: 6161001504
effective search space used: 6161001504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.