Guide to the Human Genome
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Name: TTC35 Sequence: fasta or formatted (297aa) NCBI GI: 7661910
Description:

tetratricopeptide repeat domain 35

Referenced in:

Tetratricopeptide Domains

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         31           2
 C cysteine            1.0          3           1
 D aspartate           5.1         15           2
 E glutamate          10.4         31           2
 F phenylalanine       2.7          8           1
 G glycine             3.7         11           2
 H histidine           2.0          6           1
 I isoleucine          5.1         15           2
 K lysine              7.4         22           2
 L leucine             9.4         28           1
 M methionine          4.0         12           2
 N asparagine          5.4         16           2
 P proline             1.3          4           1
 Q glutamine           5.7         17           2
 R arginine            7.1         21           2
 S serine              5.1         15           1
 T threonine           3.4         10           1
 V valine              3.4         10           1
 W tryptophan          1.7          5           1
 Y tyrosine            5.7         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tetratricopeptide repeat domain 35 
TTC7B                 0.033   tetratricopeptide repeat domain 7B 
TTC21B                0.031   tetratricopeptide repeat domain 21B 
TTC7A                 0.030   tetratricopeptide repeat domain 7A 
TTC14                 0.026   tetratricopeptide repeat domain 14 isoform a 
DNAJC3                0.026   DnaJ (Hsp40) homolog, subfamily C, member 3 
TMTC1                 0.024   transmembrane and tetratricopeptide repeat containin...
ASPH                  0.021   aspartate beta-hydroxylase isoform a 
CPB2                  0.017   plasma carboxypeptidase B2 isoform b 
LOC645177             0.014   PREDICTED: hypothetical protein 
LOC645177             0.014   PREDICTED: hypothetical protein 
LOC645177             0.014   PREDICTED: hypothetical protein 
IQCE                  0.014   IQ motif containing E isoform 1 
SPAG1                 0.014   sperm associated antigen 1 
SPAG1                 0.014   sperm associated antigen 1 
IQCE                  0.014   IQ motif containing E isoform 2 
CTR9                  0.014   SH2 domain binding protein 1 
SMC1A                 0.014   structural maintenance of chromosomes 1A 
TTC14                 0.014   tetratricopeptide repeat domain 14 isoform b 
OGT                   0.012   O-linked GlcNAc transferase isoform 2 
OGT                   0.012   O-linked GlcNAc transferase isoform 1 
DNAJC7                0.012   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
DNAJC7                0.012   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
WDTC1                 0.012   WD and tetratricopeptide repeats 1 
IFIT3                 0.012   interferon-induced protein with tetratricopeptide re...
IFIT3                 0.012   interferon-induced protein with tetratricopeptide re...
KDM1                  0.012   amine oxidase (flavin containing) domain 2 isoform a...
KDM1                  0.012   amine oxidase (flavin containing) domain 2 isoform b...
TTC6                  0.010   PREDICTED: tetratricopeptide repeat domain 6 
TTC6                  0.010   PREDICTED: tetratricopeptide repeat domain 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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