Guide to the Human Genome
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Name: IFIT3 Sequence: fasta or formatted (490aa) NCBI GI: 72534658
Description:

interferon-induced protein with tetratricopeptide repeats 3

Referenced in:

Interferon
Tetratricopeptide Domains

Other entries for this name:
alt mRNA [490aa] interferon-induced protein with tetratricopeptide repeats 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         34           2
 C cysteine            2.7         13           2
 D aspartate           4.7         23           1
 E glutamate          11.0         54           2
 F phenylalanine       2.9         14           1
 G glycine             5.1         25           1
 H histidine           2.0         10           1
 I isoleucine          3.5         17           1
 K lysine              8.4         41           2
 L leucine            11.2         55           2
 M methionine          1.6          8           1
 N asparagine          6.5         32           2
 P proline             3.3         16           1
 Q glutamine           6.9         34           2
 R arginine            3.3         16           2
 S serine              7.3         36           3
 T threonine           3.1         15           1
 V valine              3.9         19           1
 W tryptophan          1.0          5           1
 Y tyrosine            4.7         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   interferon-induced protein with tetratricopeptide re... 
IFIT3                 1.000   interferon-induced protein with tetratricopeptide re...
IFIT2                 0.477   interferon-induced protein with tetratricopeptide r...
IFIT1L                0.377   interferon-induced protein with tetratricopeptide re...
IFIT5                 0.363   interferon-induced protein with tetratricopeptide rep...
IFIT1                 0.348   interferon-induced protein with tetratricopeptide r...
OGT                   0.037   O-linked GlcNAc transferase isoform 2 
OGT                   0.037   O-linked GlcNAc transferase isoform 1 
BBS4                  0.021   Bardet-Biedl syndrome 4 
TOMM70A               0.019   translocase of outer mitochondrial membrane 70 homol...
TMTC1                 0.016   transmembrane and tetratricopeptide repeat containin...
TTC6                  0.015   PREDICTED: tetratricopeptide repeat domain 6 
TTC6                  0.015   PREDICTED: tetratricopeptide repeat domain 6 
C14orf25              0.015   PREDICTED: chromosome 14 open reading frame 25 [Hom...
PEX5L                 0.014   peroxisomal biogenesis factor 5-like 
IFT88                 0.014   intraflagellar transport 88 homolog isoform 1 
IFT88                 0.014   intraflagellar transport 88 homolog isoform 2 
TMTC3                 0.013   transmembrane and tetratricopeptide repeat containi...
TMTC4                 0.013   transmembrane and tetratricopeptide repeat containi...
TMTC4                 0.013   transmembrane and tetratricopeptide repeat containi...
TTC14                 0.012   tetratricopeptide repeat domain 14 isoform b 
TTC14                 0.012   tetratricopeptide repeat domain 14 isoform a 
RPAP3                 0.012   RNA polymerase II associated protein 3 isoform 2 [H...
RPAP3                 0.012   RNA polymerase II associated protein 3 isoform 1 [H...
SGTB                  0.012   small glutamine-rich tetratricopeptide repeat (TPR)-...
SGTA                  0.011   small glutamine-rich tetratricopeptide 
TMTC2                 0.011   transmembrane and tetratricopeptide repeat containin...
CALD1                 0.010   caldesmon 1 isoform 1 
SYNE2                 0.009   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.009   spectrin repeat containing, nuclear envelope 2 isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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