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Search of human proteins with 7657228
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7657228 interleukin 17B precursor [Homo sapiens]
(180 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7657228 interleukin 17B precursor [Homo sapiens] 380 e-106
gi|19923715 interleukin 17D precursor [Homo sapiens] 71 6e-13
gi|7019435 interleukin 17C [Homo sapiens] 59 2e-09
gi|16418375 interleukin 17F precursor [Homo sapiens] 57 7e-09
gi|4504651 interleukin 17A precursor [Homo sapiens] 55 3e-08
gi|27477081 interleukin 25 isoform 2 [Homo sapiens] 51 6e-07
gi|12232485 interleukin 25 isoform 1 precursor [Homo sapiens] 51 6e-07
gi|157504499 ankyrin repeat domain 47 [Homo sapiens] 33 0.13
gi|228008351 coiled-coil domain containing 48 [Homo sapiens] 31 0.50
gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapi... 30 0.86
gi|31581524 cordon-bleu homolog [Homo sapiens] 30 1.5
gi|7662236 TSC22 domain family, member 2 [Homo sapiens] 29 1.9
gi|238859653 pleckstrin homology domain containing family A memb... 29 2.5
gi|238859651 pleckstrin homology domain containing family A memb... 29 2.5
gi|45387951 transmembrane protein 108 [Homo sapiens] 29 2.5
gi|210147493 transmembrane protein 108 [Homo sapiens] 29 2.5
gi|66730423 hypothetical protein LOC389384 [Homo sapiens] 29 2.5
gi|156938257 leucine rich repeat containing 16B [Homo sapiens] 29 2.5
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 28 3.3
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 28 3.3
gi|239754709 PREDICTED: hypothetical protein [Homo sapiens] 28 4.3
gi|239749260 PREDICTED: hypothetical protein [Homo sapiens] 28 4.3
gi|239743356 PREDICTED: hypothetical protein XP_002342826 [Homo ... 28 4.3
gi|239509045 PREDICTED: hypothetical protein [Homo sapiens] 28 4.3
gi|56606142 complement component 1, q subcomponent-like 4 [Homo ... 28 4.3
gi|18643383 inositol 1,4,5-trisphosphate 3-kinase C [Homo sapiens] 28 4.3
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 28 4.3
gi|39777606 Rho guanine nucleotide exchange factor 1 isoform 1 [... 28 4.3
gi|190684671 mitogen-activated protein kinase binding protein 1 ... 28 4.3
gi|190684677 mitogen-activated protein kinase binding protein 1 ... 28 4.3
>gi|7657228 interleukin 17B precursor [Homo sapiens]
Length = 180
Score = 380 bits (975), Expect = e-106
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MDWPHNLLFLLTISIFLGLGQPRSPKSKRKGQGRPGPLAPGPHQVPLDLVSRMKPYARME 60
MDWPHNLLFLLTISIFLGLGQPRSPKSKRKGQGRPGPLAPGPHQVPLDLVSRMKPYARME
Sbjct: 1 MDWPHNLLFLLTISIFLGLGQPRSPKSKRKGQGRPGPLAPGPHQVPLDLVSRMKPYARME 60
Query: 61 EYERNIEEMVAQLRNSSELAQRKCEVNLQLWMSNKRSLSPWGYSINHDPSRIPVDLPEAR 120
EYERNIEEMVAQLRNSSELAQRKCEVNLQLWMSNKRSLSPWGYSINHDPSRIPVDLPEAR
Sbjct: 61 EYERNIEEMVAQLRNSSELAQRKCEVNLQLWMSNKRSLSPWGYSINHDPSRIPVDLPEAR 120
Query: 121 CLCLGCVNPFTMQEDRSMVSVPVFSQVPVRRRLCPPPPRTGPCRQRAVMETIAVGCTCIF 180
CLCLGCVNPFTMQEDRSMVSVPVFSQVPVRRRLCPPPPRTGPCRQRAVMETIAVGCTCIF
Sbjct: 121 CLCLGCVNPFTMQEDRSMVSVPVFSQVPVRRRLCPPPPRTGPCRQRAVMETIAVGCTCIF 180
>gi|19923715 interleukin 17D precursor [Homo sapiens]
Length = 202
Score = 70.9 bits (172), Expect = 6e-13
Identities = 38/87 (43%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 93 SNKRSLSPWGYSINHDPSRIPVDLPEARCLCLGCVNPFTMQEDRSMVSVPVFSQVPVRRR 152
+N RS+SPW Y I++DP+R P LPEA CLC GC+ +ED S PV+ V RR
Sbjct: 86 TNLRSVSPWAYRISYDPARYPRYLPEAYCLCRGCLTGLFGEEDVRFRSAPVYMPTVVLRR 145
Query: 153 LCPPPPRTGPCRQRAVMETIAVGCTCI 179
P G TI VGCTC+
Sbjct: 146 --TPACAGGRSVYTEAYVTIPVGCTCV 170
>gi|7019435 interleukin 17C [Homo sapiens]
Length = 197
Score = 59.3 bits (142), Expect = 2e-09
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 17/157 (10%)
Query: 31 GQGRPGPLAPGP---HQVPLDLVSRMKPYARMEEYERNIEEMVAQLRNSSELAQRKCEVN 87
GQ P LA G +P+ LVS ++ + +ER + E+ +
Sbjct: 45 GQAPPHLLARGAKWGQALPVALVSSLEAASHRGRHERPSATTQCPVLRPEEVLEAD---- 100
Query: 88 LQLWMSNKRSLSPWGYSINHDPSRIPVDLPEARCLCLGCVNPFTMQEDRSMVSVPVF-SQ 146
+++RS+SPW Y ++ D R P L A CLC GC++ T +E ++ SV + S
Sbjct: 101 -----THQRSISPWRYRVDTDEDRYPQKLAFAECLCRGCIDARTGRETAALNSVRLLQSL 155
Query: 147 VPVRRRLCPPP----PRTGPCRQRAVMETIAVGCTCI 179
+ +RRR C P G + VGCTC+
Sbjct: 156 LVLRRRPCSRDGSGLPTPGAFAFHTEFIHVPVGCTCV 192
>gi|16418375 interleukin 17F precursor [Homo sapiens]
Length = 163
Score = 57.4 bits (137), Expect = 7e-09
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Query: 96 RSLSPWGYSINHDPSRIPVDLPEARCLCLGCVNPFTMQEDRSMVSVPVFSQVPVRRRLCP 155
RS SPW Y++ DP+R P ++ +A+C LGC+N +ED SM SVP+ + V RR
Sbjct: 77 RSTSPWNYTVTWDPNRYPSEVVQAQCRNLGCINA-QGKEDISMNSVPIQQETLVVRR--- 132
Query: 156 PPPRTGPCRQRAVME--TIAVGCTCI 179
+ C +E + VGCTC+
Sbjct: 133 ---KHQGCSVSFQLEKVLVTVGCTCV 155
>gi|4504651 interleukin 17A precursor [Homo sapiens]
Length = 155
Score = 55.1 bits (131), Expect = 3e-08
Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 96 RSLSPWGYSINHDPSRIPVDLPEARCLCLGCVNPFTMQEDRSMVSVPVFSQVPVRRRLCP 155
RS SPW N DP R P + EA+C LGC+N D M SVP+ ++ V RR
Sbjct: 69 RSTSPWNLHRNEDPERYPSVIWEAKCRHLGCINA-DGNVDYHMNSVPIQQEILVLRR--E 125
Query: 156 PPPRTGPCRQRAVMETIAVGCTCI 179
PP R ++ ++VGCTC+
Sbjct: 126 PPHCPNSFRLEKIL--VSVGCTCV 147
>gi|27477081 interleukin 25 isoform 2 [Homo sapiens]
Length = 161
Score = 50.8 bits (120), Expect = 6e-07
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 94 NKRSLSPWGYSINHDPSRIPVDLPEARCLCLGCVNPFT--MQEDRSMVSVPVFSQVPVRR 151
N R++SPW Y ++ D +R+P DL ARCLC CV+ T + R + +Q R
Sbjct: 67 NSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQTGSHMDPRGNSELLYHNQTVFYR 126
Query: 152 RLCPPPPRT--GPCRQRAVMETIAVGCTCI 179
R C T G C +R + +++ C C+
Sbjct: 127 RPCHGEKGTHKGYCLERRLYR-VSLACVCV 155
>gi|12232485 interleukin 25 isoform 1 precursor [Homo sapiens]
Length = 177
Score = 50.8 bits (120), Expect = 6e-07
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 94 NKRSLSPWGYSINHDPSRIPVDLPEARCLCLGCVNPFT--MQEDRSMVSVPVFSQVPVRR 151
N R++SPW Y ++ D +R+P DL ARCLC CV+ T + R + +Q R
Sbjct: 83 NSRAISPWRYELDRDLNRLPQDLYHARCLCPHCVSLQTGSHMDPRGNSELLYHNQTVFYR 142
Query: 152 RLCPPPPRT--GPCRQRAVMETIAVGCTCI 179
R C T G C +R + +++ C C+
Sbjct: 143 RPCHGEKGTHKGYCLERRLYR-VSLACVCV 171
>gi|157504499 ankyrin repeat domain 47 [Homo sapiens]
Length = 821
Score = 33.1 bits (74), Expect = 0.13
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 18 GLGQPRSPKSKRKGQGRP--GPLAPGPHQVPL---DLVSRMKPYARMEEYERNIEEMVAQ 72
G G PRSP+ + P P +PGP Q+ L + + ++ +E+ R + E+ Q
Sbjct: 154 GRGVPRSPRGSGRSSPAPNLAPASPGPAQLQLVREQMAAALRRLRELEDQARTLPELQEQ 213
Query: 73 LR 74
+R
Sbjct: 214 VR 215
>gi|228008351 coiled-coil domain containing 48 [Homo sapiens]
Length = 598
Score = 31.2 bits (69), Expect = 0.50
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 28 KRKGQGRPGPLAPGPHQVPLDLVSRMKPYARMEEYERNIEEMVAQLRNSSELAQRKC-EV 86
+R + R P APGP P + AR+EE ++ E+V LR + + + +C +
Sbjct: 177 RRPRRRRRPPCAPGPDSGP-----DCERVARLEEENSSLRELVEDLRAALQSSDARCLAL 231
Query: 87 NLQLWMS 93
+ LW S
Sbjct: 232 QVGLWKS 238
>gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapiens]
Length = 1341
Score = 30.4 bits (67), Expect = 0.86
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 18 GLGQPRSPKSKRKGQGRPGPLAPGPHQVPLDLVSRMKPYARMEEYERNIEEMVAQLRNSS 77
GL R ++K + QG P PL P P P + P A E ER + E A+
Sbjct: 1097 GLLVDRPSETKTEEQGIPRPLHPPP---PPPVQPPQHPRAEQREQERAVREQWAEREREM 1153
Query: 78 ELAQR 82
E +R
Sbjct: 1154 ERRER 1158
>gi|31581524 cordon-bleu homolog [Homo sapiens]
Length = 1261
Score = 29.6 bits (65), Expect = 1.5
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 94 NKRSLSPWGYSINHDPSRIPVDLPEARCLCLGCVNPFTMQEDRSMVSVPVFSQVPVRRRL 153
NKRS S + + PS L L LG ++ +++ + +++R
Sbjct: 255 NKRSNSKGCLTTPNSPSMHSRSLTLGPSLSLGSISGVSVKSE-------------MKKRR 301
Query: 154 CPPPPRTGPCRQRAVMETIAVG 175
PPPP +GP Q E +++G
Sbjct: 302 APPPPGSGPPVQDKASEKVSLG 323
>gi|7662236 TSC22 domain family, member 2 [Homo sapiens]
Length = 780
Score = 29.3 bits (64), Expect = 1.9
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
Query: 37 PLAPGPHQVPLDLVSRMKPYARMEEYERNIEEMVAQLRNSSELAQRKCEVNLQLWMSNKR 96
PLAPG H P L P + + +++ + +V Q+ ++ ++ + L L NK
Sbjct: 560 PLAPGTHSAPTSL-----PQSDLSQFQTQTQPLVGQVDDTRRKSEPLPQPPLSLIAENKP 614
Query: 97 SLSP 100
+ P
Sbjct: 615 VVKP 618
>gi|238859653 pleckstrin homology domain containing family A member
4 isoform 2 [Homo sapiens]
Length = 583
Score = 28.9 bits (63), Expect = 2.5
Identities = 40/154 (25%), Positives = 56/154 (36%), Gaps = 23/154 (14%)
Query: 20 GQPRSPKSKRKGQGRPGPLAPGPHQVPLDLVSRMKPYARMEEYERNIEEMVAQLRNSSEL 79
GQPRSP + G+G GP GP +V R+ + R R L
Sbjct: 160 GQPRSPARPQPGEGPGGP--GGPPEVSRGEEGRISESPEVTRLSRG--------RGRPRL 209
Query: 80 AQRKCEVNLQLWMSNKRSLSPWGYS-INHDPSRIPVDLPEARCLCL--------GCVNPF 130
+L + +R+ SP ++ ++ PS P+ LP R P
Sbjct: 210 LTPSPTTDLHSGLQMRRARSPDLFTPLSRPPS--PLSLPRPRSAPARRPPAPSGDTAPPA 267
Query: 131 TMQEDRSMVSV-PVFSQVPVRRRLC-PPPPRTGP 162
S + V P P R+ L PP PR GP
Sbjct: 268 RPHTPLSRIDVRPPLDWGPQRQTLSRPPTPRRGP 301
>gi|238859651 pleckstrin homology domain containing family A member
4 isoform 1 [Homo sapiens]
Length = 779
Score = 28.9 bits (63), Expect = 2.5
Identities = 40/154 (25%), Positives = 56/154 (36%), Gaps = 23/154 (14%)
Query: 20 GQPRSPKSKRKGQGRPGPLAPGPHQVPLDLVSRMKPYARMEEYERNIEEMVAQLRNSSEL 79
GQPRSP + G+G GP GP +V R+ + R R L
Sbjct: 160 GQPRSPARPQPGEGPGGP--GGPPEVSRGEEGRISESPEVTRLSRG--------RGRPRL 209
Query: 80 AQRKCEVNLQLWMSNKRSLSPWGYS-INHDPSRIPVDLPEARCLCL--------GCVNPF 130
+L + +R+ SP ++ ++ PS P+ LP R P
Sbjct: 210 LTPSPTTDLHSGLQMRRARSPDLFTPLSRPPS--PLSLPRPRSAPARRPPAPSGDTAPPA 267
Query: 131 TMQEDRSMVSV-PVFSQVPVRRRLC-PPPPRTGP 162
S + V P P R+ L PP PR GP
Sbjct: 268 RPHTPLSRIDVRPPLDWGPQRQTLSRPPTPRRGP 301
>gi|45387951 transmembrane protein 108 [Homo sapiens]
Length = 575
Score = 28.9 bits (63), Expect = 2.5
Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 22 PRSPKSKRKGQG---RPGPLAPGPH 43
PR P S RKG G RP P APG H
Sbjct: 166 PRPPGSSRKGAGNSSRPVPPAPGGH 190
>gi|210147493 transmembrane protein 108 [Homo sapiens]
Length = 575
Score = 28.9 bits (63), Expect = 2.5
Identities = 15/25 (60%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 22 PRSPKSKRKGQG---RPGPLAPGPH 43
PR P S RKG G RP P APG H
Sbjct: 166 PRPPGSSRKGAGNSSRPVPPAPGGH 190
>gi|66730423 hypothetical protein LOC389384 [Homo sapiens]
Length = 652
Score = 28.9 bits (63), Expect = 2.5
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 12 TISIFLGLGQPRSPKSKRKGQGRPGPL---APGPHQVPLDLVSRMKPYARMEEYERNIEE 68
+IS GL +P+ ++ G PGP P Q P P R EY+ I++
Sbjct: 340 SISSSYGLEEPKVQEAPSTEAGAPGPSVLPTPSESQEP----GEELPLDRASEYKEFIQK 395
Query: 69 MVAQLRNSSE 78
+++ L+++ E
Sbjct: 396 IISMLQDAEE 405
>gi|156938257 leucine rich repeat containing 16B [Homo sapiens]
Length = 1372
Score = 28.9 bits (63), Expect = 2.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 20 GQPRSPKSKRKGQGRPGPLAPGPHQ 44
G+PR P++ G GRP APG Q
Sbjct: 977 GRPRPPRTTPPGPGRPSMPAPGTRQ 1001
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 28.5 bits (62), Expect = 3.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 22 PRSPKSKRKGQGRPGPLAPGP 42
PRSP S R+ PGP AP P
Sbjct: 179 PRSPSSSRRWAAMPGPGAPRP 199
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 28.5 bits (62), Expect = 3.3
Identities = 18/54 (33%), Positives = 21/54 (38%), Gaps = 15/54 (27%)
Query: 109 PSRIPVDLPEARCLCLGCVNPFTMQEDRSMVSVPVFSQVPVRRRLCPPPPRTGP 162
P PV LPE R RS++ P F + R L PPPP P
Sbjct: 589 PPSTPVPLPEKR---------------RSILREPTFRWTSLTRELPPPPPAPPP 627
>gi|239754709 PREDICTED: hypothetical protein [Homo sapiens]
Length = 112
Score = 28.1 bits (61), Expect = 4.3
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
Query: 116 LPEARCLCLGCVNPFTMQEDRSMVSVPVFSQVPVRRRLCPP 156
LP+ARC C G +P S PV +P+RR PP
Sbjct: 68 LPDARCPCPGVPSP---------GSQPVLLSLPLRRSPSPP 99
>gi|239749260 PREDICTED: hypothetical protein [Homo sapiens]
Length = 112
Score = 28.1 bits (61), Expect = 4.3
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
Query: 116 LPEARCLCLGCVNPFTMQEDRSMVSVPVFSQVPVRRRLCPP 156
LP+ARC C G +P S PV +P+RR PP
Sbjct: 68 LPDARCPCPGVPSP---------GSQPVLLSLPLRRSPSPP 99
>gi|239743356 PREDICTED: hypothetical protein XP_002342826 [Homo
sapiens]
Length = 112
Score = 28.1 bits (61), Expect = 4.3
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
Query: 116 LPEARCLCLGCVNPFTMQEDRSMVSVPVFSQVPVRRRLCPP 156
LP+ARC C G +P S PV +P+RR PP
Sbjct: 68 LPDARCPCPGVPSP---------GSQPVLLSLPLRRSPSPP 99
>gi|239509045 PREDICTED: hypothetical protein [Homo sapiens]
Length = 112
Score = 28.1 bits (61), Expect = 4.3
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
Query: 116 LPEARCLCLGCVNPFTMQEDRSMVSVPVFSQVPVRRRLCPP 156
LP+ARC C G +P S PV +P+RR PP
Sbjct: 68 LPDARCPCPGVPSP---------GSQPVLLSLPLRRSPSPP 99
>gi|56606142 complement component 1, q subcomponent-like 4 [Homo
sapiens]
Length = 238
Score = 28.1 bits (61), Expect = 4.3
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 22 PRSPKSKRKGQGRPGPLAPGPHQV--PLDLVSRMKPYARM----EEYE-RNIEEMVAQLR 74
PR P + G PGP PGP V V R+ YA + E YE +++V +
Sbjct: 77 PRGPPGEPGRPGPPGPPGPGPGGVAPAAGYVPRIAFYAGLRRPHEGYEVLRFDDVVTNVG 136
Query: 75 NSSELAQRK 83
N+ E A K
Sbjct: 137 NAYEAASGK 145
>gi|18643383 inositol 1,4,5-trisphosphate 3-kinase C [Homo
sapiens]
Length = 683
Score = 28.1 bits (61), Expect = 4.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 17 LGLGQPRSPKSKRKGQGRPGPLAPGP 42
+GL PR + ++ GQ RPGP A P
Sbjct: 24 MGLEAPRGGRRRQPGQQRPGPGAGAP 49
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 28.1 bits (61), Expect = 4.3
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 4 PHNLLFLLTISIFLGLGQPRSPKSKRKGQGRPGP 37
P +LL LL + + L L Q R P +R G PGP
Sbjct: 8 PRSLLVLLQV-VVLALAQIRGPPGERGPPGPPGP 40
>gi|39777606 Rho guanine nucleotide exchange factor 1 isoform 1
[Homo sapiens]
Length = 927
Score = 28.1 bits (61), Expect = 4.3
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 10 LLTISIFLGLGQPRSPKSKRKGQGRPGPLAPGPHQVPLDLVSRMKPYARMEEYERNIEEM 69
+ ++S + +PR + +G PGP PG VP+ ++ + E E N EE
Sbjct: 1 MASLSTWSSPAEPREMEDFARGAASPGPSRPG--LVPVSIIG-AEDEDFENELETNSEEQ 57
Query: 70 VAQLRNSSELAQR 82
+Q ++ ++ +R
Sbjct: 58 NSQFQSLEQVKRR 70
>gi|190684671 mitogen-activated protein kinase binding protein 1
isoform a [Homo sapiens]
Length = 1508
Score = 28.1 bits (61), Expect = 4.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 19 LGQPRSPKSKRKGQGRPGPLAPGPHQVPL 47
LG+ +PK + + Q PGP +P Q+P+
Sbjct: 1341 LGEGTTPKPRTECQAHPGPSSPCAQQLPV 1369
>gi|190684677 mitogen-activated protein kinase binding protein 1
isoform b [Homo sapiens]
Length = 1514
Score = 28.1 bits (61), Expect = 4.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 19 LGQPRSPKSKRKGQGRPGPLAPGPHQVPL 47
LG+ +PK + + Q PGP +P Q+P+
Sbjct: 1347 LGEGTTPKPRTECQAHPGPSSPCAQQLPV 1375
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.138 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,705,449
Number of Sequences: 37866
Number of extensions: 424634
Number of successful extensions: 2322
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 2297
Number of HSP's gapped (non-prelim): 64
length of query: 180
length of database: 18,247,518
effective HSP length: 96
effective length of query: 84
effective length of database: 14,612,382
effective search space: 1227440088
effective search space used: 1227440088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.