Guide to the Human Genome
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Name: IL17C Sequence: fasta or formatted (197aa) NCBI GI: 7019435
Description:

interleukin 17C

Referenced in:

Interleukins and Their Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         18           2
 C cysteine            4.6          9           1
 D aspartate           3.6          7           1
 E glutamate           5.6         11           2
 F phenylalanine       2.5          5           1
 G glycine             6.6         13           1
 H histidine           6.6         13           2
 I isoleucine          1.5          3           1
 K lysine              1.0          2           1
 L leucine            13.7         27           2
 M methionine          0.5          1           1
 N asparagine          0.5          1           1
 P proline             9.1         18           2
 Q glutamine           3.0          6           1
 R arginine            9.6         19           3
 S serine              7.1         14           2
 T threonine           6.6         13           2
 V valine              5.6         11           1
 W tryptophan          1.5          3           1
 Y tyrosine            1.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   interleukin 17C 
IL17D                 0.128   interleukin 17D precursor 
IL17F                 0.107   interleukin 17F precursor 
IL25                  0.099   interleukin 25 isoform 2 
IL25                  0.099   interleukin 25 isoform 1 precursor 
IL17A                 0.094   interleukin 17A precursor 
IL17B                 0.087   interleukin 17B precursor 
C17orf74              0.026   hypothetical protein LOC201243 
ARAP2                 0.015   ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...
LOC100132405          0.013   PREDICTED: hypothetical protein 
LOC100132405          0.013   PREDICTED: hypothetical protein 
LOC100132405          0.013   PREDICTED: hypothetical protein 
ZKSCAN5               0.013   zinc finger with KRAB and SCAN domains 5 
ZKSCAN5               0.013   zinc finger with KRAB and SCAN domains 5 
GGN                   0.013   gametogenetin 
GSK3B                 0.013   glycogen synthase kinase 3 beta isoform 1 
TMEM108               0.010   transmembrane protein 108 
TMEM108               0.010   transmembrane protein 108 
SHANK1                0.010   SH3 and multiple ankyrin repeat domains 1 
GLI4                  0.008   GLI-Kruppel family member GLI4 
LCE2A                 0.008   late cornified envelope 2A 
PGM2L1                0.008   phosphoglucomutase 2-like 1 
WFIKKN1               0.008   WAP, follistatin/kazal, immunoglobulin, kunitz and n...
PDE4DIP               0.005   phosphodiesterase 4D interacting protein isoform 1 ...
PHLDA1                0.005   pleckstrin homology-like domain, family A, member 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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