Guide to the Human Genome
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Name: GABRP Sequence: fasta or formatted (440aa) NCBI GI: 7657106
Description:

gamma-aminobutyric acid (GABA) A receptor, pi

Referenced in:

GABA and Glycine

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         19           2
 C cysteine            1.6          7           1
 D aspartate           4.5         20           1
 E glutamate           5.0         22           2
 F phenylalanine       7.0         31           1
 G glycine             4.5         20           2
 H histidine           1.1          5           1
 I isoleucine          6.1         27           2
 K lysine              3.9         17           2
 L leucine            10.9         48           2
 M methionine          3.0         13           1
 N asparagine          5.0         22           1
 P proline             2.3         10           1
 Q glutamine           3.2         14           2
 R arginine            5.5         24           2
 S serine              9.5         42           2
 T threonine           8.0         35           3
 V valine              7.7         34           2
 W tryptophan          1.6          7           1
 Y tyrosine            5.2         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   gamma-aminobutyric acid (GABA) A receptor, pi 
GABRB1                0.351   gamma-aminobutyric acid (GABA) A receptor, beta 1 p...
GABRD                 0.350   gamma-aminobutyric acid (GABA) A receptor, delta pre...
GABRB3                0.338   gamma-aminobutyric acid (GABA) A receptor, beta 3 is...
GABRB3                0.338   gamma-aminobutyric acid (GABA) A receptor, beta 3 iso...
GABRB2                0.332   gamma-aminobutyric acid (GABA) A receptor, beta 2 iso...
GABRB2                0.320   gamma-aminobutyric acid (GABA) A receptor, beta 2 is...
GABRR3                0.317   gamma-aminobutyric acid (GABA) receptor, rho 3 [Hom...
GABRR2                0.308   gamma-aminobutyric acid (GABA) receptor, rho 2 prec...
GABRR1                0.306   gamma-aminobutyric acid (GABA) receptor, rho 1 [Hom...
GLRA3                 0.294   glycine receptor, alpha 3 isoform a 
GLRA3                 0.292   glycine receptor, alpha 3 isoform b 
GLRA2                 0.291   glycine receptor, alpha 2 isoform B 
GLRA2                 0.291   glycine receptor, alpha 2 isoform A 
GLRA2                 0.291   glycine receptor, alpha 2 isoform A 
GLRA1                 0.290   glycine receptor, alpha 1 isoform 2 precursor [Homo...
GLRA1                 0.287   glycine receptor, alpha 1 isoform 1 precursor [Homo...
GLRA4                 0.275   glycine receptor, alpha 4 precursor 
GABRG2                0.268   gamma-aminobutyric acid A receptor, gamma 2 isoform ...
GABRG2                0.268   gamma-aminobutyric acid A receptor, gamma 2 isoform ...
GABRG1                0.267   gamma-aminobutyric acid A receptor, gamma 1 precurso...
GABRQ                 0.264   gamma-aminobutyric acid (GABA) receptor, theta precur...
GABRA3                0.255   gamma-aminobutyric acid A receptor, alpha 3 precursor...
GABRA6                0.254   gamma-aminobutyric acid A receptor, alpha 6 precurs...
GABRA5                0.250   gamma-aminobutyric acid (GABA) A receptor, alpha 5 pr...
GABRG2                0.249   gamma-aminobutyric acid A receptor, gamma 2 isoform...
GABRG3                0.247   gamma-aminobutyric acid (GABA) A receptor, gamma 3 ...
GABRA2                0.246   gamma-aminobutyric acid A receptor, alpha 2 
GABRA2                0.246   gamma-aminobutyric acid A receptor, alpha 2 precurs...
GABRA4                0.243   gamma-aminobutyric acid A receptor, alpha 4 precurso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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