Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: GABRA5 Sequence: fasta or formatted (462aa) NCBI GI: 4503861
Description:

gamma-aminobutyric acid (GABA) A receptor, alpha 5 precursor

Referenced in:

GABA and Glycine

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         26           2
 C cysteine            1.1          5           1
 D aspartate           4.1         19           2
 E glutamate           4.5         21           2
 F phenylalanine       5.8         27           2
 G glycine             5.4         25           1
 H histidine           1.7          8           1
 I isoleucine          6.1         28           1
 K lysine              6.7         31           3
 L leucine             8.0         37           3
 M methionine          3.9         18           1
 N asparagine          5.4         25           2
 P proline             4.8         22           2
 Q glutamine           2.2         10           1
 R arginine            4.3         20           1
 S serine              8.4         39           2
 T threonine          10.0         46           2
 V valine              6.5         30           3
 W tryptophan          1.7          8           1
 Y tyrosine            3.7         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   gamma-aminobutyric acid (GABA) A receptor, alpha 5 pr... 
GABRA2                0.697   gamma-aminobutyric acid A receptor, alpha 2 
GABRA2                0.697   gamma-aminobutyric acid A receptor, alpha 2 precurs...
GABRA3                0.684   gamma-aminobutyric acid A receptor, alpha 3 precursor...
GABRA1                0.678   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.678   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.678   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.678   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.678   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.678   gamma-aminobutyric acid (GABA) A receptor, alpha 1 ...
GABRA1                0.678   gamma-aminobutyric acid (GABA) A receptor, alpha 1 p...
GABRA6                0.532   gamma-aminobutyric acid A receptor, alpha 6 precurs...
GABRA4                0.499   gamma-aminobutyric acid A receptor, alpha 4 precurso...
GABRG1                0.385   gamma-aminobutyric acid A receptor, gamma 1 precurso...
GABRG2                0.374   gamma-aminobutyric acid A receptor, gamma 2 isoform ...
GABRG2                0.374   gamma-aminobutyric acid A receptor, gamma 2 isoform ...
GABRG3                0.356   gamma-aminobutyric acid (GABA) A receptor, gamma 3 ...
GABRG2                0.351   gamma-aminobutyric acid A receptor, gamma 2 isoform...
GABRE                 0.307   gamma-aminobutyric acid (GABA) A receptor, epsilon p...
GABRB3                0.280   gamma-aminobutyric acid (GABA) A receptor, beta 3 is...
GABRB3                0.278   gamma-aminobutyric acid (GABA) A receptor, beta 3 iso...
GLRA2                 0.275   glycine receptor, alpha 2 isoform A 
GLRA3                 0.275   glycine receptor, alpha 3 isoform b 
GLRA2                 0.275   glycine receptor, alpha 2 isoform A 
GLRA2                 0.274   glycine receptor, alpha 2 isoform B 
GABRB1                0.273   gamma-aminobutyric acid (GABA) A receptor, beta 1 p...
GLRA1                 0.271   glycine receptor, alpha 1 isoform 2 precursor [Homo...
GABRB2                0.270   gamma-aminobutyric acid (GABA) A receptor, beta 2 iso...
GLRA1                 0.270   glycine receptor, alpha 1 isoform 1 precursor [Homo...
GLRA3                 0.265   glycine receptor, alpha 3 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press