Search of human proteins with 74271816

Search of human proteins with 74271816

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|74271816 radical fringe [Homo sapiens]
         (331 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|74271816 radical fringe [Homo sapiens]                             684   0.0  
gi|93140999 lunatic fringe isoform a [Homo sapiens]                   383   e-106
gi|93141005 lunatic fringe isoform b [Homo sapiens]                   348   3e-96
gi|21536461 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransfer...   333   1e-91
gi|154689817 beta 1,3-galactosyltransferase-like [Homo sapiens]        72   9e-13
gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens]              50   4e-06
gi|48717495 chondroitin polymerizing factor 2 [Homo sapiens]           46   5e-05
gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens]              45   1e-04
gi|9910144 core 1 synthase, glycoprotein-N-acetylgalactosamine 3...    41   0.001
gi|192449449 ubiquitin-conjugating enzyme E2O [Homo sapiens]           40   0.002
gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Hom...    39   0.005
gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Hom...    39   0.005
gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo ...    39   0.005
gi|39812378 RAN binding protein 9 [Homo sapiens]                       38   0.011
gi|4507691 transformation/transcription domain-associated protei...    37   0.019
gi|56788370 pleckstrin and Sec7 domain containing 4 [Homo sapiens]     37   0.032
gi|239755323 PREDICTED: hypothetical protein XP_002344527 [Homo ...    36   0.042
gi|239749816 PREDICTED: hypothetical protein [Homo sapiens]            36   0.042
gi|239744106 PREDICTED: hypothetical protein XP_002343034 [Homo ...    36   0.042
gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo sa...    36   0.054
gi|71043876 undifferentiated embryonic cell transcription factor...    35   0.071
gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3 ...    35   0.093
gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2 ...    35   0.093
gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1 [...    35   0.093
gi|29029601 DEAH (Asp-Glu-Ala-His) box polypeptide 37 [Homo sapi...    35   0.12 
gi|54607018 RYK receptor-like tyrosine kinase isoform 2 [Homo sa...    35   0.12 
gi|54607020 RYK receptor-like tyrosine kinase isoform 1 [Homo sa...    35   0.12 
gi|4557038 atrial/embryonic alkali myosin light chain [Homo sapi...    35   0.12 
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]         35   0.12 
gi|50845428 atrial/embryonic alkali myosin light chain [Homo sap...    35   0.12 

>gi|74271816 radical fringe [Homo sapiens]
          Length = 331

 Score =  684 bits (1764), Expect = 0.0
 Identities = 331/331 (100%), Positives = 331/331 (100%)

Query: 1   MSRARGALCRACLALAAALAALLLLPLPLPRAPAPARTPAPAPRAPPSRPAAPSLRPDDV 60
           MSRARGALCRACLALAAALAALLLLPLPLPRAPAPARTPAPAPRAPPSRPAAPSLRPDDV
Sbjct: 1   MSRARGALCRACLALAAALAALLLLPLPLPRAPAPARTPAPAPRAPPSRPAAPSLRPDDV 60

Query: 61  FIAVKTTRKNHGPRLRLLLRTWISRARQQTFIFTDGDDPELELQGGDRVINTNCSAVRTR 120
           FIAVKTTRKNHGPRLRLLLRTWISRARQQTFIFTDGDDPELELQGGDRVINTNCSAVRTR
Sbjct: 61  FIAVKTTRKNHGPRLRLLLRTWISRARQQTFIFTDGDDPELELQGGDRVINTNCSAVRTR 120

Query: 121 QALCCKMSVEYDKFIESGRKWFCHVDDDNYVNARSLLHLLSSFSPSQDVYLGRPSLDHPI 180
           QALCCKMSVEYDKFIESGRKWFCHVDDDNYVNARSLLHLLSSFSPSQDVYLGRPSLDHPI
Sbjct: 121 QALCCKMSVEYDKFIESGRKWFCHVDDDNYVNARSLLHLLSSFSPSQDVYLGRPSLDHPI 180

Query: 181 EATERVQGGRTVTTVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAEQVRLPDDCTV 240
           EATERVQGGRTVTTVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAEQVRLPDDCTV
Sbjct: 181 EATERVQGGRTVTTVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAEQVRLPDDCTV 240

Query: 241 GYIVEGLLGARLLHSPLFHSHLENLQRLPPDTLLQQVTLSHGGPENPHNVVNVAGGFSLH 300
           GYIVEGLLGARLLHSPLFHSHLENLQRLPPDTLLQQVTLSHGGPENPHNVVNVAGGFSLH
Sbjct: 241 GYIVEGLLGARLLHSPLFHSHLENLQRLPPDTLLQQVTLSHGGPENPHNVVNVAGGFSLH 300

Query: 301 QDPTRFKSIHCLLYPDTDWCPRQKQGAPTSR 331
           QDPTRFKSIHCLLYPDTDWCPRQKQGAPTSR
Sbjct: 301 QDPTRFKSIHCLLYPDTDWCPRQKQGAPTSR 331


>gi|93140999 lunatic fringe isoform a [Homo sapiens]
          Length = 379

 Score =  383 bits (983), Expect = e-106
 Identities = 199/319 (62%), Positives = 233/319 (73%), Gaps = 6/319 (1%)

Query: 4   ARGALCRACLALAAALAALLLLPLPLPRAPAPARTPAPAPRAPPSRPAAPSLRPDDVFIA 63
           A GAL R   +L+   +  LL        P P   P PA   P  RP A  L P DVFIA
Sbjct: 63  APGALVRDVHSLSEYFS--LLTRARRDAGPPPGAAPRPADGHP--RPLAEPLAPRDVFIA 118

Query: 64  VKTTRKNHGPRLRLLLRTWISRARQQTFIFTDGDDPELELQGGDRVINTNCSAVRTRQAL 123
           VKTT+K H  RL LLL TWISR ++ TFIFTDG+D  L    G+ VI TNCSA  +RQAL
Sbjct: 119 VKTTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVI-TNCSAAHSRQAL 177

Query: 124 CCKMSVEYDKFIESGRKWFCHVDDDNYVNARSLLHLLSSFSPSQDVYLGRPSLDHPIEAT 183
            CKM+VEYD+FIESGRKWFCHVDDDNYVN R+LL LL+S+  ++DVY+G+PSLD PI+A 
Sbjct: 178 SCKMAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAM 237

Query: 184 ERVQGGRTVTTVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAEQVRLPDDCTVGYI 243
           ERV   + V  V FWFATGGAGFC+SRGLALKMSPWAS G FM+TAE++RLPDDCT+GYI
Sbjct: 238 ERVSENK-VRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYI 296

Query: 244 VEGLLGARLLHSPLFHSHLENLQRLPPDTLLQQVTLSHGGPENPHNVVNVAGGFSLHQDP 303
           VE LLG  L+ S LFHSHLENLQ++P   L +QVTLS+G  EN  N V+V G FS+  DP
Sbjct: 297 VEALLGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADP 356

Query: 304 TRFKSIHCLLYPDTDWCPR 322
           +RF+SIHC LYPDT WCPR
Sbjct: 357 SRFRSIHCHLYPDTPWCPR 375


>gi|93141005 lunatic fringe isoform b [Homo sapiens]
          Length = 361

 Score =  348 bits (894), Expect = 3e-96
 Identities = 185/303 (61%), Positives = 219/303 (72%), Gaps = 6/303 (1%)

Query: 4   ARGALCRACLALAAALAALLLLPLPLPRAPAPARTPAPAPRAPPSRPAAPSLRPDDVFIA 63
           A GAL R   +L+   +  LL        P P   P PA   P  RP A  L P DVFIA
Sbjct: 63  APGALVRDVHSLSEYFS--LLTRARRDAGPPPGAAPRPADGHP--RPLAEPLAPRDVFIA 118

Query: 64  VKTTRKNHGPRLRLLLRTWISRARQQTFIFTDGDDPELELQGGDRVINTNCSAVRTRQAL 123
           VKTT+K H  RL LLL TWISR ++ TFIFTDG+D  L    G+ VI TNCSA  +RQAL
Sbjct: 119 VKTTKKFHRARLDLLLETWISRHKEMTFIFTDGEDEALARHTGNVVI-TNCSAAHSRQAL 177

Query: 124 CCKMSVEYDKFIESGRKWFCHVDDDNYVNARSLLHLLSSFSPSQDVYLGRPSLDHPIEAT 183
            CKM+VEYD+FIESGRKWFCHVDDDNYVN R+LL LL+S+  ++DVY+G+PSLD PI+A 
Sbjct: 178 SCKMAVEYDRFIESGRKWFCHVDDDNYVNLRALLRLLASYPHTRDVYVGKPSLDRPIQAM 237

Query: 184 ERVQGGRTVTTVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAEQVRLPDDCTVGYI 243
           ERV   + V  V FWFATGGAGFC+SRGLALKMSPWAS G FM+TAE++RLPDDCT+GYI
Sbjct: 238 ERVSENK-VRPVHFWFATGGAGFCISRGLALKMSPWASGGHFMNTAERIRLPDDCTIGYI 296

Query: 244 VEGLLGARLLHSPLFHSHLENLQRLPPDTLLQQVTLSHGGPENPHNVVNVAGGFSLHQDP 303
           VE LLG  L+ S LFHSHLENLQ++P   L +QVTLS+G  EN  N V+V G FS+  DP
Sbjct: 297 VEALLGVPLIRSGLFHSHLENLQQVPTSELHEQVTLSYGMFENKRNAVHVKGPFSVEADP 356

Query: 304 TRF 306
           +R+
Sbjct: 357 SRW 359


>gi|21536461 O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
           [Homo sapiens]
          Length = 321

 Score =  333 bits (855), Expect = 1e-91
 Identities = 174/317 (54%), Positives = 215/317 (67%), Gaps = 5/317 (1%)

Query: 9   CRACLALAAALAALLLLPLPLPRAP---APARTPAPAPRAPPSRPAAPSLRPDDVFIAVK 65
           CR    LA AL  LL + L   R     +P R       + P+ P  P L+  DVFIAVK
Sbjct: 3   CRLPRGLAGALLTLLCMGLLCLRYHLNLSPQRVQGTPELSQPN-PGPPKLQLHDVFIAVK 61

Query: 66  TTRKNHGPRLRLLLRTWISRARQQTFIFTDGDDPELELQGGDRVINTNCSAVRTRQALCC 125
           TTR  H  RL LLL TW+SR R+QTF+FTD  D  L+ + G  ++ TNCSA  +  AL C
Sbjct: 62  TTRAFHRLRLELLLDTWVSRTREQTFVFTDSPDKGLQERLGSHLVVTNCSAEHSHPALSC 121

Query: 126 KMSVEYDKFIESGRKWFCHVDDDNYVNARSLLHLLSSFSPSQDVYLGRPSLDHPIEATER 185
           KM+ E+D F+ SG +WFCHVDDDNYVN R+LL LL +F  ++DVY+GRPSL+ PI A+E 
Sbjct: 122 KMAAEFDTFLASGLRWFCHVDDDNYVNPRALLQLLRAFPLARDVYVGRPSLNRPIHASEP 181

Query: 186 VQGGRTVTTVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTAEQVRLPDDCTVGYIVE 245
               RT   V+FWFATGGAGFC++R LALKM+PWAS   FM T+  +RLPDDCT+GYI+E
Sbjct: 182 QPHNRT-RLVQFWFATGGAGFCINRKLALKMAPWASGSRFMDTSALIRLPDDCTMGYIIE 240

Query: 246 GLLGARLLHSPLFHSHLENLQRLPPDTLLQQVTLSHGGPENPHNVVNVAGGFSLHQDPTR 305
             LG RL  SPLFHSHLE LQ L    L +QVTLS+G  E   NV+ + G FS  +DP+R
Sbjct: 241 CKLGGRLQPSPLFHSHLETLQLLRTAQLPEQVTLSYGVFEGKLNVIKLQGPFSPEEDPSR 300

Query: 306 FKSIHCLLYPDTDWCPR 322
           F+S+HCLLYPDT WCP+
Sbjct: 301 FRSLHCLLYPDTPWCPQ 317


>gi|154689817 beta 1,3-galactosyltransferase-like [Homo sapiens]
          Length = 498

 Score = 71.6 bits (174), Expect = 9e-13
 Identities = 63/231 (27%), Positives = 100/231 (43%), Gaps = 38/231 (16%)

Query: 55  LRPDDVFIAVKTTRKNHGPRLRLLLRTWISRARQQTFI--FTDGDDPELELQGGDRVINT 112
           ++  D+F+AVKT +K HG R+ ++ +TW S+A    +   +T+   P ++L         
Sbjct: 264 VKKKDIFVAVKTCKKFHGDRIPIVKQTWESQASLIEYYSDYTENSIPTVDL--------- 314

Query: 113 NCSAVRTRQALCCKMSVEYDKFIESGR---KWFCHVDDDNYVNARSLLHLLSSFSPSQDV 169
                 T +  C K     ++F+   +    W   VDDD  ++   L HLLS +   + V
Sbjct: 315 --GIPNTDRGHCGKTFAILERFLNRSQDKTAWLVIVDDDTLISISRLQHLLSCYDSGEPV 372

Query: 170 YLGRPSLDHPIEATERVQGGRTVTTVKFWFATGGAGFCLSRGLALKMSPWASLGSFMSTA 229
           +LG              + G  + T  + + TGG G   SR  A++    +    + + A
Sbjct: 373 FLGE-------------RYGYGLGTGGYSYITGGGGMVFSRE-AVRRLLASKCRCYSNDA 418

Query: 230 EQVRLPDDCTVGYIVEGLLGARLLHSPLFHSHLENLQRLPPDTLLQQVTLS 280
                PDD  +G    G LG  + HSPLFH         P D L  QV +S
Sbjct: 419 -----PDDMVLGMCFSG-LGIPVTHSPLFHQ--ARPVDYPKDYLSHQVPIS 461


>gi|74271903 chondroitin sulfate synthase 3 [Homo sapiens]
          Length = 882

 Score = 49.7 bits (117), Expect = 4e-06
 Identities = 57/229 (24%), Positives = 89/229 (38%), Gaps = 33/229 (14%)

Query: 51  AAPSLRPDD-VFIAVKTTRKNHGPRLRLLLRTWISRARQQTFIFTDGDDPE--------- 100
           AAPS RP D +++ V T +K  G R     RTW      +   F+    P          
Sbjct: 163 AAPSARPRDFLYVGVMTAQKYLGSRALAAQRTWARFIPGRVEFFSSQQPPNAGQPPPPLP 222

Query: 101 -LELQGGDRVINTNCSAVRTRQALCCKMSVEYDKFIESGRKWFCHVDDDNYVNARSLLHL 159
            + L G D        +   ++     +   +D +++   +WF   DDD Y+    L   
Sbjct: 223 VIALPGVD-------DSYPPQKKSFMMIKYMHDHYLDK-YEWFMRADDDVYIKGDKLEEF 274

Query: 160 LSSFSPSQDVYLGRPSLDHPIEATERVQGGRTVTTVKFWFATGGAGFCLSRGLALKMSPW 219
           L S + S+ +YLG+  L +  E       G+        F  GG G   SR +  +M P 
Sbjct: 275 LRSLNSSKPLYLGQTGLGNIEEL------GKLGLEPGENFCMGGPGMIFSREVLRRMVP- 327

Query: 220 ASLGSFMSTAEQVRLPDDCTVGYIVEGLLGARLLHS----PLFHSHLEN 264
             +G  +   E     +D  VG  V    G + + S     LFH + E+
Sbjct: 328 -HIGECL--REMYTTHEDVEVGRCVRRFGGTQCVWSYEMQQLFHENYEH 373


>gi|48717495 chondroitin polymerizing factor 2 [Homo sapiens]
          Length = 772

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 44/157 (28%), Positives = 60/157 (38%), Gaps = 33/157 (21%)

Query: 62  IAVKTTRKNHGPRLRLLLRTWISRARQQTFIFTDGDDPELELQGGDRVINTNCSAVRTRQ 121
           +AV  T  +H PRL        +RA     + + GD+    L               T +
Sbjct: 118 VAVNRTVAHHFPRLLYFTGQRGARAPAGMQVVSHGDERPAWLMS------------ETLR 165

Query: 122 ALCCKMSVEYDKFIESGRKWFCHVDDDNYVNARSLLHLLSSFSPSQDVYLGRPSLDHPIE 181
            L      +YD        WF  + DD YV A  L  L    S +QD+YLGR        
Sbjct: 166 HLHTHFGADYD--------WFFIMQDDTYVQAPRLAALAGHLSINQDLYLGR-------- 209

Query: 182 ATERVQGGRTVTTVKFWFATGGAGFCLSRGLALKMSP 218
           A E +  G         +  GG G+ LSR L L++ P
Sbjct: 210 AEEFIGAGEQAR-----YCHGGFGYLLSRSLLLRLRP 241


>gi|31542309 chondroitin sulfate synthase 1 [Homo sapiens]
          Length = 802

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 72/298 (24%), Positives = 113/298 (37%), Gaps = 56/298 (18%)

Query: 4   ARGALCRACLALAAALAALLLLPLPLPRAP-----APARTPAP---------APRAPPSR 49
           ARG      + L   L  +L   L LPRA       P R  +P         A +A  +R
Sbjct: 3   ARGRRAWLSVLLGLVLGFVLASRLVLPRASELKRAGPRRRASPEGCRSGQAAASQAGGAR 62

Query: 50  PAA-------PSLRPDD-------VFIAVKTTRKNHGPRLRLLLRTWISRARQQT-FIFT 94
             A       P   PD        +F+ V T +K    R     RTW      +  F  +
Sbjct: 63  GDARGAQLWPPGSDPDGGPRDRNFLFVGVMTAQKYLQTRAVAAYRTWSKTIPGKVQFFSS 122

Query: 95  DGDD-----PELELQGGDRVINTNCSAVRTRQALCCKMSVEYDKFIESGRKWFCHVDDDN 149
           +G D     P + L+G D        +   ++     +   +D +++   +WF   DDD 
Sbjct: 123 EGSDTSVPIPVVPLRGVD-------DSYPPQKKSFMMLKYMHDHYLDK-YEWFMRADDDV 174

Query: 150 YVNARSLLHLLSSFSPSQDVYLGRPSLDHPIEATERVQGGRTVTTVKFWFATGGAGFCLS 209
           Y+    L + L S + S+ ++LG+  L      TE +  G+        F  GG G  +S
Sbjct: 175 YIKGDRLENFLRSLNSSEPLFLGQTGLG----TTEEM--GKLALEPGENFCMGGPGVIMS 228

Query: 210 RGLALKMSPWASLGSFMSTAEQVRLPDDCTVGYIVEGLLGARLLHS----PLFHSHLE 263
           R +  +M P   +G  +   E     +D  VG  V    G + + S     LF+ + E
Sbjct: 229 REVLRRMVP--HIGKCL--REMYTTHEDVEVGRCVRRFAGVQCVWSYEMQQLFYENYE 282


>gi|9910144 core 1 synthase, glycoprotein-N-acetylgalactosamine
           3-beta-galactosyltransferase, 1 [Homo sapiens]
          Length = 363

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 16/70 (22%)

Query: 141 WFCHVDDDNYVNARSLLHLLSSFSPSQDVYLGRPSLDHPIEATERVQGGRTVTTVKFWFA 200
           WF   DDD YV   +L  LLS + P + +Y GR                R    VK  + 
Sbjct: 164 WFLKADDDTYVILDNLRWLLSKYDPEEPIYFGR----------------RFKPYVKQGYM 207

Query: 201 TGGAGFCLSR 210
           +GGAG+ LS+
Sbjct: 208 SGGAGYVLSK 217


>gi|192449449 ubiquitin-conjugating enzyme E2O [Homo sapiens]
          Length = 1292

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 20/46 (43%), Positives = 24/46 (52%)

Query: 28 PLPRAPAPARTPAPAPRAPPSRPAAPSLRPDDVFIAVKTTRKNHGP 73
          P P APAPA+ PAPAP A P+  AAP   P     +      + GP
Sbjct: 7  PTPAAPAPAQAPAPAPEAVPAPAAAPVPAPAPASDSASGPSSDSGP 52


>gi|169790903 cyclin-dependent kinase inhibitor 1C isoform b [Homo
           sapiens]
          Length = 305

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 15  LAAALAALLLLPLPLPR-----APAPARTPAPAPRAPPSRPAAPSLRPD 58
           +AA +A  +L P P P      APAP   PAPAP   P+   AP+  PD
Sbjct: 158 VAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPD 206



 Score = 32.0 bits (71), Expect = 0.78
 Identities = 16/26 (61%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 26  PLPLPRAPAPARTPAPAPRAPPSRPA 51
           P P P APAPA  PAPAP A P   A
Sbjct: 189 PAPAP-APAPAPAPAPAPDAAPQESA 213



 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 27  LPLPRAPAPARTPAPAPRAPPSRPAAPS 54
           LP    PAPA TP P P   P+   AP+
Sbjct: 125 LPSVPVPAPASTPPPVPVLAPAPAPAPA 152


>gi|169790899 cyclin-dependent kinase inhibitor 1C isoform b [Homo
           sapiens]
          Length = 305

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 15  LAAALAALLLLPLPLPR-----APAPARTPAPAPRAPPSRPAAPSLRPD 58
           +AA +A  +L P P P      APAP   PAPAP   P+   AP+  PD
Sbjct: 158 VAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPD 206



 Score = 32.0 bits (71), Expect = 0.78
 Identities = 16/26 (61%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 26  PLPLPRAPAPARTPAPAPRAPPSRPA 51
           P P P APAPA  PAPAP A P   A
Sbjct: 189 PAPAP-APAPAPAPAPAPDAAPQESA 213



 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 27  LPLPRAPAPARTPAPAPRAPPSRPAAPS 54
           LP    PAPA TP P P   P+   AP+
Sbjct: 125 LPSVPVPAPASTPPPVPVLAPAPAPAPA 152


>gi|4557441 cyclin-dependent kinase inhibitor 1C isoform a [Homo
           sapiens]
          Length = 316

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 15  LAAALAALLLLPLPLPR-----APAPARTPAPAPRAPPSRPAAPSLRPD 58
           +AA +A  +L P P P      APAP   PAPAP   P+   AP+  PD
Sbjct: 169 VAAPVAVAVLAPAPAPAPAPAPAPAPVAAPAPAPAPAPAPAPAPAPAPD 217



 Score = 32.0 bits (71), Expect = 0.78
 Identities = 16/26 (61%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 26  PLPLPRAPAPARTPAPAPRAPPSRPA 51
           P P P APAPA  PAPAP A P   A
Sbjct: 200 PAPAP-APAPAPAPAPAPDAAPQESA 224



 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 27  LPLPRAPAPARTPAPAPRAPPSRPAAPS 54
           LP    PAPA TP P P   P+   AP+
Sbjct: 136 LPSVPVPAPASTPPPVPVLAPAPAPAPA 163


>gi|39812378 RAN binding protein 9 [Homo sapiens]
          Length = 729

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 21/43 (48%), Positives = 23/43 (53%)

Query: 15  LAAALAALLLLPLPLPRAPAPARTPAPAPRAPPSRPAAPSLRP 57
           L AA AALLL P P P     A  P P P  PP+  AAP+  P
Sbjct: 60  LGAAAAALLLHPPPPPPPATAAPPPPPPPPPPPASAAAPASGP 102


>gi|4507691 transformation/transcription domain-associated protein
           [Homo sapiens]
          Length = 3830

 Score = 37.4 bits (85), Expect = 0.019
 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 9   CRACLALAAALAALLLLPLPLPRAPAPARTPAPAPRAPPSRPAAPSLRP 57
           C+    L A  AAL  +P   P AP PA +PAP P  PP  P  P   P
Sbjct: 471 CKPQSELGAVEAALPGVPTA-PAAPGPAPSPAPVPAPPPPPPPPPPATP 518


>gi|56788370 pleckstrin and Sec7 domain containing 4 [Homo sapiens]
          Length = 1056

 Score = 36.6 bits (83), Expect = 0.032
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 27  LPLPRAPAPARTPA--PAPRAPPSRPAAPSLRPDDVFIAVKTTRKNHGPRLRLLLRTWIS 84
           LP   AP P R+PA  P P +P S    P  RP        + +  H      +L  W  
Sbjct: 428 LPCTLAPCPWRSPASSPEPSSPESESRGPGPRPSPASSQEGSPQLQH--HSSGILPKWTL 485

Query: 85  RARQQTFIFTDGDDP 99
            A Q + + TDG+ P
Sbjct: 486 DASQSSLLETDGEQP 500


>gi|239755323 PREDICTED: hypothetical protein XP_002344527 [Homo
          sapiens]
          Length = 152

 Score = 36.2 bits (82), Expect = 0.042
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 14 ALAAALAALLLLPLPLPRAPAPARTPAPAPRAPPSRPAAPSLR 56
          AL A LA  L  P P P  P P++ P P P  PP+  +A SLR
Sbjct: 55 ALCALLARFLPFPRPAPLPPPPSQPPPPPPLDPPA--SASSLR 95


>gi|239749816 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 152

 Score = 36.2 bits (82), Expect = 0.042
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 14 ALAAALAALLLLPLPLPRAPAPARTPAPAPRAPPSRPAAPSLR 56
          AL A LA  L  P P P  P P++ P P P  PP+  +A SLR
Sbjct: 55 ALCALLARFLPFPRPAPLPPPPSQPPPPPPLDPPA--SASSLR 95


>gi|239744106 PREDICTED: hypothetical protein XP_002343034 [Homo
          sapiens]
          Length = 152

 Score = 36.2 bits (82), Expect = 0.042
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)

Query: 14 ALAAALAALLLLPLPLPRAPAPARTPAPAPRAPPSRPAAPSLR 56
          AL A LA  L  P P P  P P++ P P P  PP+  +A SLR
Sbjct: 55 ALCALLARFLPFPRPAPLPPPPSQPPPPPPLDPPA--SASSLR 95


>gi|21359935 Down syndrome cell adhesion molecule like 1 [Homo
            sapiens]
          Length = 2113

 Score = 35.8 bits (81), Expect = 0.054
 Identities = 24/51 (47%), Positives = 26/51 (50%), Gaps = 7/51 (13%)

Query: 14   ALAAALAALL---LLPLPLPRA----PAPARTPAPAPRAPPSRPAAPSLRP 57
            A AAA  A L    L +P P A    PAP  TPA  P AP + P APS  P
Sbjct: 2020 APAAASTATLPQRTLAMPAPPAGTAPPAPGPTPAEPPTAPSAAPPAPSTEP 2070


>gi|71043876 undifferentiated embryonic cell transcription factor
          1 [Homo sapiens]
          Length = 341

 Score = 35.4 bits (80), Expect = 0.071
 Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 6/35 (17%)

Query: 26 PLPLPRAPAPA------RTPAPAPRAPPSRPAAPS 54
          PL  P  P+PA      RTP  AP  PP RPA+PS
Sbjct: 10 PLAPPAPPSPASPDPEPRTPGDAPGTPPRRPASPS 44


>gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3
           [Homo sapiens]
          Length = 1125

 Score = 35.0 bits (79), Expect = 0.093
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 25  LPLPLPRAPAPARTPAPAPRAPPSRPAAP 53
           LP+P+P  P PA    P P+ PP +P  P
Sbjct: 662 LPVPVPPIPVPAPITVPPPQVPPHQPGPP 690



 Score = 30.0 bits (66), Expect = 3.0
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 30  PRAPAPARTPAPAPRAPPSRPAAPSLRPDDVFIAV-KTTRKNHGPRLRLLLRTWISRARQ 88
           P  P    +  P    P S PA P L   D F AV +  +   G +L+ +L+T+    + 
Sbjct: 155 PPPPVKVSSEPPTQATPNSVPAVPQLPSSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKP 214

Query: 89  QT 90
           Q+
Sbjct: 215 QS 216


>gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2
           [Homo sapiens]
          Length = 1132

 Score = 35.0 bits (79), Expect = 0.093
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 25  LPLPLPRAPAPARTPAPAPRAPPSRPAAP 53
           LP+P+P  P PA    P P+ PP +P  P
Sbjct: 647 LPVPVPPIPVPAPITVPPPQVPPHQPGPP 675



 Score = 30.0 bits (66), Expect = 3.0
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 30  PRAPAPARTPAPAPRAPPSRPAAPSLRPDDVFIAV-KTTRKNHGPRLRLLLRTWISRARQ 88
           P  P    +  P    P S PA P L   D F AV +  +   G +L+ +L+T+    + 
Sbjct: 140 PPPPVKVSSEPPTQATPNSVPAVPQLPSSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKP 199

Query: 89  QT 90
           Q+
Sbjct: 200 QS 201


>gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1
           [Homo sapiens]
          Length = 1147

 Score = 35.0 bits (79), Expect = 0.093
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 25  LPLPLPRAPAPARTPAPAPRAPPSRPAAP 53
           LP+P+P  P PA    P P+ PP +P  P
Sbjct: 662 LPVPVPPIPVPAPITVPPPQVPPHQPGPP 690



 Score = 30.0 bits (66), Expect = 3.0
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 30  PRAPAPARTPAPAPRAPPSRPAAPSLRPDDVFIAV-KTTRKNHGPRLRLLLRTWISRARQ 88
           P  P    +  P    P S PA P L   D F AV +  +   G +L+ +L+T+    + 
Sbjct: 155 PPPPVKVSSEPPTQATPNSVPAVPQLPSSDAFAAVAQLFQTTQGQQLQQILQTFQQPPKP 214

Query: 89  QT 90
           Q+
Sbjct: 215 QS 216


>gi|29029601 DEAH (Asp-Glu-Ala-His) box polypeptide 37 [Homo
           sapiens]
          Length = 1157

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 28  PLPRAPAPARTPAPAPRAPPSRPAAP-----SLRPDDVFIAVKTTRKNHGPRLRL 77
           PLP APAP+  P PA    P  PAA      +L    VFI V  + +    RL+L
Sbjct: 198 PLPPAPAPSSQPVPAGMTVPPPPAAAPPLPRALAKPAVFIPVNRSPEMQEERLKL 252


>gi|54607018 RYK receptor-like tyrosine kinase isoform 2 [Homo
          sapiens]
          Length = 607

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 25/53 (47%), Positives = 27/53 (50%), Gaps = 7/53 (13%)

Query: 10 RACLALAAALAA-----LLLLPLPLPRAPAPARTPAPAPRAP--PSRPAAPSL 55
          R+CL  A  L A     LLLL   LP  PAP    APAPR P   S  A PS+
Sbjct: 12 RSCLPGARGLRAPPPPPLLLLLALLPLLPAPGAAAAPAPRPPELQSASAGPSV 64


>gi|54607020 RYK receptor-like tyrosine kinase isoform 1 [Homo
          sapiens]
          Length = 610

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 25/53 (47%), Positives = 27/53 (50%), Gaps = 7/53 (13%)

Query: 10 RACLALAAALAA-----LLLLPLPLPRAPAPARTPAPAPRAP--PSRPAAPSL 55
          R+CL  A  L A     LLLL   LP  PAP    APAPR P   S  A PS+
Sbjct: 12 RSCLPGARGLRAPPPPPLLLLLALLPLLPAPGAAAAPAPRPPELQSASAGPSV 64


>gi|4557038 atrial/embryonic alkali myosin light chain [Homo
          sapiens]
          Length = 197

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 16/31 (51%), Positives = 17/31 (54%)

Query: 32 APAPARTPAPAPRAPPSRPAAPSLRPDDVFI 62
          APAPA  PAPAP   P  P  P+  P  V I
Sbjct: 16 APAPAPAPAPAPAPAPEAPKEPAFDPKSVKI 46


>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
          Length = 1303

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 28 PLPRAPAPARTPAPAPRAPPSRPAAPSL 55
          P P +P P  TP+P P +P +RPA P L
Sbjct: 16 PPPPSPPPPSTPSPPPCSPDARPATPHL 43



 Score = 29.3 bits (64), Expect = 5.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 33 PAPARTPAPAPRAPPSRPAAPSLRPD 58
          P P+ +P P    PPS P+ P   PD
Sbjct: 10 PPPSESPPPPSPPPPSTPSPPPCSPD 35


>gi|50845428 atrial/embryonic alkali myosin light chain [Homo
          sapiens]
          Length = 197

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 16/31 (51%), Positives = 17/31 (54%)

Query: 32 APAPARTPAPAPRAPPSRPAAPSLRPDDVFI 62
          APAPA  PAPAP   P  P  P+  P  V I
Sbjct: 16 APAPAPAPAPAPAPAPEAPKEPAFDPKSVKI 46


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.137    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,897,144
Number of Sequences: 37866
Number of extensions: 793637
Number of successful extensions: 11600
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 211
Number of HSP's that attempted gapping in prelim test: 9021
Number of HSP's gapped (non-prelim): 2292
length of query: 331
length of database: 18,247,518
effective HSP length: 103
effective length of query: 228
effective length of database: 14,347,320
effective search space: 3271188960
effective search space used: 3271188960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.